Clone Sequence Records
BS03664.3prime Sequence
696 bp (695 high quality bases) assembled on 2005-12-01
> BS03664.3prime
ATGGTCTAGAAAGCTTCTATTTGAGGTAGCTGTGCACCACATCGCGCAAC
TCCTTGATGACCTGCGACTGATCGGAGGCGCCCACCACGGCGGTTCCCGA
GACGATCATGTTGGCTCCGGCCTCGGCACAGCAGTGTATAGTCTTGGGTC
CCACACCTCCGTCCACCTCGATGTCCAGGTTGGGGTAGTTTTCGCGCAGC
CACTTGACCTTCGGCATCATATCGGCCATGAAGGATTGTCCGCCAAAACC
GGGTTCCACGGTCATCACCAGCACAACGTCGGCAATGCTCAAGTACTTCT
CCAGATCTTGTACCTCGGTGCCCGGCTTAATGGCCAGGCCCACCTTCATG
CCCGACTCCTGCACTCGGCGACTGACTCTGACGACATCCTGCACCGGTTC
GACGTGGAAGGTGTAGAGATTGACACCGGCATCGGCCATGGGCTCTATCC
ACTGCTCCGGATTCTGGACCATCATGTGCGTCTCGAAAAAGGCCGTCTTG
ATCTTGTTGCGCAAGCTCTTGACCATGGGGTGACCAAAGGTGAGATTCGG
CACAAAAGTGCCGTCCATCACGTCCAGATGCAGGTAGTCCGCTCCATTGT
CCAGTAGTTTCTGTGACTCCGCCGCTAGGTTGGAGAGATCCGCATTGAGA
ATGCTGGGACCGATCTTGGCTTGGACGGGCATGTCGACTGATAACT
BS03664.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-PA | 666 | CG30499-RA | 1..666 | 682..17 | 3330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-RB | 891 | CG30499-RB | 99..765 | 682..16 | 3335 | 100 | Minus |
CG30499-RA | 1060 | CG30499-RA | 268..934 | 682..16 | 3335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7564560..7564859 | 16..315 | 1500 | 100 | Plus |
2R | 25286936 | 2R | 7565055..7565242 | 311..498 | 940 | 100 | Plus |
2R | 25286936 | 2R | 7565299..7565484 | 497..682 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:43:09 has no hits.
BS03664.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:37 Download gff for
BS03664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-PA | 1..666 | 17..682 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:19 Download gff for
BS03664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-PA | 1..666 | 17..682 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:00:13 Download gff for
BS03664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 263..938 | 11..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:30 Download gff for
BS03664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 263..938 | 11..689 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:30 Download gff for
BS03664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7565058..7565240 | 314..496 | 100 | <- | Plus |
2R | 7565299..7565489 | 497..689 | 97 | | Plus |
2R | 7564556..7564857 | 11..313 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:00:13 Download gff for
BS03664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3452061..3452362 | 11..313 | 99 | <- | Plus |
arm_2R | 3452563..3452745 | 314..496 | 100 | <- | Plus |
arm_2R | 3452804..3452994 | 497..689 | 97 | | Plus |
BS03664.5prime Sequence
696 bp (695 high quality bases) assembled on 2005-12-01
> BS03664.5prime
GAAGTTATCAGTCGACATGCCCGTCCAAGCCAAGATCGGTCCCAGCATTC
TCAATGCGGATCTCTCCAACCTAGCGGCGGAGTCACAGAAACTACTGGAC
AATGGAGCGGACTACCTGCATCTGGACGTGATGGACGGCACTTTTGTGCC
GAATCTCACCTTTGGTCACCCCATGGTCAAGAGCTTGCGCAACAAGATCA
AGACGGCCTTTTTCGAGACGCACATGATGGTCCAGAATCCGGAGCAGTGG
ATAGAGCCCATGGCCGATGCCGGTGTCAATCTCTACACCTTCCACGTCGA
ACCGGTGCAGGATGTCGTCAGAGTCAGTCGCCGAGTGCAGGAGTCGGGCA
TGAAGGTGGGCCTGGCCATTAAGCCGGGCACCGAGGTACAAGATCTGGAG
AAGTACTTGAGCATTGCCGACGTTGTGCTGGTGATGACCGTGGAACCCGG
TTTTGGCGGACAATCCTTCATGGCCGATATGATGCCGAAGGTCAAGTGGC
TGCGCGAAAACTACCCCAACCTGGACATCGAGGTGGACGGAGGTGTGGGA
CCCAAGACTATACACTGCTGTGCCGAGGCCGGAGCCAACATGATCGTCTC
GGGAACCGCCGTGGTGGGCGCCTCCGATCAGTCGCAGGTCATCAAGGAGT
TGCGCGATGTGGTGCACAGCTACCTCAAATAGAAGCTTTCTAGACC
BS03664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-PA | 666 | CG30499-RA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-RB | 891 | CG30499-RB | 99..765 | 17..683 | 3335 | 100 | Plus |
CG30499-RA | 1060 | CG30499-RA | 268..934 | 17..683 | 3335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7564560..7564859 | 683..384 | 1500 | 100 | Minus |
2R | 25286936 | 2R | 7565055..7565242 | 388..201 | 940 | 100 | Minus |
2R | 25286936 | 2R | 7565299..7565484 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:34:16 has no hits.
BS03664.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:39 Download gff for
BS03664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-PA | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:21 Download gff for
BS03664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-PA | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:51:32 Download gff for
BS03664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 263..938 | 10..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:34:25 Download gff for
BS03664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 263..938 | 10..688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:34:25 Download gff for
BS03664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7564556..7564857 | 386..688 | 99 | <- | Minus |
2R | 7565058..7565240 | 203..385 | 100 | <- | Minus |
2R | 7565299..7565489 | 10..202 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:51:32 Download gff for
BS03664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3452061..3452362 | 386..688 | 99 | <- | Minus |
arm_2R | 3452563..3452745 | 203..385 | 100 | <- | Minus |
arm_2R | 3452804..3452994 | 10..202 | 97 | | Minus |
BS03664.complete Sequence
698 bp (698 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634744
> BS03664.complete
GAAGTTATCAGTCGACATGCCCGTCCAAGCCAAGATCGGTCCCAGCATTC
TCAATGCGGATCTCTCCAACCTAGCGGCGGAGTCACAGAAACTACTGGAC
AATGGAGCGGACTACCTGCATCTGGACGTGATGGACGGCACTTTTGTGCC
GAATCTCACCTTTGGTCACCCCATGGTCAAGAGCTTGCGCAACAAGATCA
AGACGGCCTTTTTCGAGACGCACATGATGGTCCAGAATCCGGAGCAGTGG
ATAGAGCCCATGGCCGATGCCGGTGTCAATCTCTACACCTTCCACGTCGA
ACCGGTGCAGGATGTCGTCAGAGTCAGTCGCCGAGTGCAGGAGTCGGGCA
TGAAGGTGGGCCTGGCCATTAAGCCGGGCACCGAGGTACAAGATCTGGAG
AAGTACTTGAGCATTGCCGACGTTGTGCTGGTGATGACCGTGGAACCCGG
TTTTGGCGGACAATCCTTCATGGCCGATATGATGCCGAAGGTCAAGTGGC
TGCGCGAAAACTACCCCAACCTGGACATCGAGGTGGACGGAGGTGTGGGA
CCCAAGACTATACACTGCTGTGCCGAGGCCGGAGCCAACATGATCGTCTC
GGGAACCGCCGTGGTGGGCGCCTCCGATCAGTCGCAGGTCATCAAGGAGT
TGCGCGATGTGGTGCACAGCTACCTCAAATAGAAGCTTTCTAGACCAT
BS03664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-RB | 666 | CG30499-PB | 1..666 | 17..682 | 3330 | 100 | Plus |
CG30499-RA | 666 | CG30499-PA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-RB | 891 | CG30499-RB | 99..765 | 17..683 | 3335 | 100 | Plus |
CG30499-RA | 1060 | CG30499-RA | 268..934 | 17..683 | 3335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7564560..7564859 | 683..384 | 1500 | 100 | Minus |
2R | 25286936 | 2R | 7565055..7565242 | 388..201 | 940 | 100 | Minus |
2R | 25286936 | 2R | 7565299..7565484 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:51:46 has no hits.
BS03664.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:04 Download gff for
BS03664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 261..936 | 10..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:56 Download gff for
BS03664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 268..927 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:53 Download gff for
BS03664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 261..936 | 10..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:24 Download gff for
BS03664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 268..927 | 17..676 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:24 Download gff for
BS03664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7564567..7564857 | 386..676 | 100 | <- | Minus |
2R | 7565058..7565240 | 203..385 | 100 | <- | Minus |
2R | 7565299..7565484 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:56 Download gff for
BS03664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3452804..3452989 | 17..202 | 100 | | Minus |
arm_2R | 3452563..3452745 | 203..385 | 100 | <- | Minus |
arm_2R | 3452072..3452362 | 386..676 | 100 | <- | Minus |
BS03664.pep Sequence
Translation from 16 to 681
> BS03664.pep
MPVQAKIGPSILNADLSNLAAESQKLLDNGADYLHLDVMDGTFVPNLTFG
HPMVKSLRNKIKTAFFETHMMVQNPEQWIEPMADAGVNLYTFHVEPVQDV
VRVSRRVQESGMKVGLAIKPGTEVQDLEKYLSIADVVLVMTVEPGFGGQS
FMADMMPKVKWLRENYPNLDIEVDGGVGPKTIHCCAEAGANMIVSGTAVV
GASDQSQVIKELRDVVHSYLK*
BS03664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-PB | 221 | CG30499-PB | 1..221 | 1..221 | 1142 | 100 | Plus |
CG30499-PA | 221 | CG30499-PA | 1..221 | 1..221 | 1142 | 100 | Plus |