Clone BS03664 Report

Search the DGRC for BS03664

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG30499-RA
Protein status:BS03664.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03664.3prime Sequence

696 bp (695 high quality bases) assembled on 2005-12-01

> BS03664.3prime
ATGGTCTAGAAAGCTTCTATTTGAGGTAGCTGTGCACCACATCGCGCAAC
TCCTTGATGACCTGCGACTGATCGGAGGCGCCCACCACGGCGGTTCCCGA
GACGATCATGTTGGCTCCGGCCTCGGCACAGCAGTGTATAGTCTTGGGTC
CCACACCTCCGTCCACCTCGATGTCCAGGTTGGGGTAGTTTTCGCGCAGC
CACTTGACCTTCGGCATCATATCGGCCATGAAGGATTGTCCGCCAAAACC
GGGTTCCACGGTCATCACCAGCACAACGTCGGCAATGCTCAAGTACTTCT
CCAGATCTTGTACCTCGGTGCCCGGCTTAATGGCCAGGCCCACCTTCATG
CCCGACTCCTGCACTCGGCGACTGACTCTGACGACATCCTGCACCGGTTC
GACGTGGAAGGTGTAGAGATTGACACCGGCATCGGCCATGGGCTCTATCC
ACTGCTCCGGATTCTGGACCATCATGTGCGTCTCGAAAAAGGCCGTCTTG
ATCTTGTTGCGCAAGCTCTTGACCATGGGGTGACCAAAGGTGAGATTCGG
CACAAAAGTGCCGTCCATCACGTCCAGATGCAGGTAGTCCGCTCCATTGT
CCAGTAGTTTCTGTGACTCCGCCGCTAGGTTGGAGAGATCCGCATTGAGA
ATGCTGGGACCGATCTTGGCTTGGACGGGCATGTCGACTGATAACT

BS03664.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-PA 666 CG30499-RA 1..666 682..17 3330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-RB 891 CG30499-RB 99..765 682..16 3335 100 Minus
CG30499-RA 1060 CG30499-RA 268..934 682..16 3335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7564560..7564859 16..315 1500 100 Plus
2R 25286936 2R 7565055..7565242 311..498 940 100 Plus
2R 25286936 2R 7565299..7565484 497..682 930 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:43:09 has no hits.

BS03664.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:37 Download gff for BS03664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-PA 1..666 17..682 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:19 Download gff for BS03664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-PA 1..666 17..682 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:00:13 Download gff for BS03664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 263..938 11..689 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:30 Download gff for BS03664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 263..938 11..689 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:30 Download gff for BS03664.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7565058..7565240 314..496 100 <- Plus
2R 7565299..7565489 497..689 97   Plus
2R 7564556..7564857 11..313 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:00:13 Download gff for BS03664.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3452061..3452362 11..313 99 <- Plus
arm_2R 3452563..3452745 314..496 100 <- Plus
arm_2R 3452804..3452994 497..689 97   Plus

BS03664.5prime Sequence

696 bp (695 high quality bases) assembled on 2005-12-01

> BS03664.5prime
GAAGTTATCAGTCGACATGCCCGTCCAAGCCAAGATCGGTCCCAGCATTC
TCAATGCGGATCTCTCCAACCTAGCGGCGGAGTCACAGAAACTACTGGAC
AATGGAGCGGACTACCTGCATCTGGACGTGATGGACGGCACTTTTGTGCC
GAATCTCACCTTTGGTCACCCCATGGTCAAGAGCTTGCGCAACAAGATCA
AGACGGCCTTTTTCGAGACGCACATGATGGTCCAGAATCCGGAGCAGTGG
ATAGAGCCCATGGCCGATGCCGGTGTCAATCTCTACACCTTCCACGTCGA
ACCGGTGCAGGATGTCGTCAGAGTCAGTCGCCGAGTGCAGGAGTCGGGCA
TGAAGGTGGGCCTGGCCATTAAGCCGGGCACCGAGGTACAAGATCTGGAG
AAGTACTTGAGCATTGCCGACGTTGTGCTGGTGATGACCGTGGAACCCGG
TTTTGGCGGACAATCCTTCATGGCCGATATGATGCCGAAGGTCAAGTGGC
TGCGCGAAAACTACCCCAACCTGGACATCGAGGTGGACGGAGGTGTGGGA
CCCAAGACTATACACTGCTGTGCCGAGGCCGGAGCCAACATGATCGTCTC
GGGAACCGCCGTGGTGGGCGCCTCCGATCAGTCGCAGGTCATCAAGGAGT
TGCGCGATGTGGTGCACAGCTACCTCAAATAGAAGCTTTCTAGACC

BS03664.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-PA 666 CG30499-RA 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-RB 891 CG30499-RB 99..765 17..683 3335 100 Plus
CG30499-RA 1060 CG30499-RA 268..934 17..683 3335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7564560..7564859 683..384 1500 100 Minus
2R 25286936 2R 7565055..7565242 388..201 940 100 Minus
2R 25286936 2R 7565299..7565484 202..17 930 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:34:16 has no hits.

BS03664.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:39 Download gff for BS03664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-PA 1..666 17..682 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:21 Download gff for BS03664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-PA 1..666 17..682 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:51:32 Download gff for BS03664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 263..938 10..688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:34:25 Download gff for BS03664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 263..938 10..688 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:34:25 Download gff for BS03664.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7564556..7564857 386..688 99 <- Minus
2R 7565058..7565240 203..385 100 <- Minus
2R 7565299..7565489 10..202 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:51:32 Download gff for BS03664.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3452061..3452362 386..688 99 <- Minus
arm_2R 3452563..3452745 203..385 100 <- Minus
arm_2R 3452804..3452994 10..202 97   Minus

BS03664.complete Sequence

698 bp (698 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634744

> BS03664.complete
GAAGTTATCAGTCGACATGCCCGTCCAAGCCAAGATCGGTCCCAGCATTC
TCAATGCGGATCTCTCCAACCTAGCGGCGGAGTCACAGAAACTACTGGAC
AATGGAGCGGACTACCTGCATCTGGACGTGATGGACGGCACTTTTGTGCC
GAATCTCACCTTTGGTCACCCCATGGTCAAGAGCTTGCGCAACAAGATCA
AGACGGCCTTTTTCGAGACGCACATGATGGTCCAGAATCCGGAGCAGTGG
ATAGAGCCCATGGCCGATGCCGGTGTCAATCTCTACACCTTCCACGTCGA
ACCGGTGCAGGATGTCGTCAGAGTCAGTCGCCGAGTGCAGGAGTCGGGCA
TGAAGGTGGGCCTGGCCATTAAGCCGGGCACCGAGGTACAAGATCTGGAG
AAGTACTTGAGCATTGCCGACGTTGTGCTGGTGATGACCGTGGAACCCGG
TTTTGGCGGACAATCCTTCATGGCCGATATGATGCCGAAGGTCAAGTGGC
TGCGCGAAAACTACCCCAACCTGGACATCGAGGTGGACGGAGGTGTGGGA
CCCAAGACTATACACTGCTGTGCCGAGGCCGGAGCCAACATGATCGTCTC
GGGAACCGCCGTGGTGGGCGCCTCCGATCAGTCGCAGGTCATCAAGGAGT
TGCGCGATGTGGTGCACAGCTACCTCAAATAGAAGCTTTCTAGACCAT

BS03664.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-RB 666 CG30499-PB 1..666 17..682 3330 100 Plus
CG30499-RA 666 CG30499-PA 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-RB 891 CG30499-RB 99..765 17..683 3335 100 Plus
CG30499-RA 1060 CG30499-RA 268..934 17..683 3335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7564560..7564859 683..384 1500 100 Minus
2R 25286936 2R 7565055..7565242 388..201 940 100 Minus
2R 25286936 2R 7565299..7565484 202..17 930 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:51:46 has no hits.

BS03664.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:04 Download gff for BS03664.complete
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 261..936 10..688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:56 Download gff for BS03664.complete
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 268..927 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:53 Download gff for BS03664.complete
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 261..936 10..688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:24 Download gff for BS03664.complete
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 268..927 17..676 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:24 Download gff for BS03664.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7564567..7564857 386..676 100 <- Minus
2R 7565058..7565240 203..385 100 <- Minus
2R 7565299..7565484 17..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:56 Download gff for BS03664.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3452804..3452989 17..202 100   Minus
arm_2R 3452563..3452745 203..385 100 <- Minus
arm_2R 3452072..3452362 386..676 100 <- Minus

BS03664.pep Sequence

Translation from 16 to 681

> BS03664.pep
MPVQAKIGPSILNADLSNLAAESQKLLDNGADYLHLDVMDGTFVPNLTFG
HPMVKSLRNKIKTAFFETHMMVQNPEQWIEPMADAGVNLYTFHVEPVQDV
VRVSRRVQESGMKVGLAIKPGTEVQDLEKYLSIADVVLVMTVEPGFGGQS
FMADMMPKVKWLRENYPNLDIEVDGGVGPKTIHCCAEAGANMIVSGTAVV
GASDQSQVIKELRDVVHSYLK*

BS03664.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-PB 221 CG30499-PB 1..221 1..221 1142 100 Plus
CG30499-PA 221 CG30499-PA 1..221 1..221 1142 100 Plus