Clone Sequence Records
BS03667.3prime Sequence
705 bp (704 high quality bases) assembled on 2005-12-01
> BS03667.3prime
ATGGTCTAGAAAGCTTTCAAAGCACAAGAGGCACGGCCTCTGCCACCGGC
TGGTTGATCTCCTGGTGGCGTTGCAGTAATCCCAAGCACTGGTGCAGGCA
CTGGGTGCTGGCCGTGGAGATCGCCTTGAGCAAAAGAAGATCGGGATCCG
TTGGCGAGAAGGAAGCGCAGTCGATGCTCTCGATGGCCCTGGCCAGAGAA
GCGTTGCATTGTTCCGTGAGAAACAGAGCTTGGCGCGCTGAAACCATGGC
ATCGGAGGCGGCAAGCAATTCCCGCGGAGGAAGCGGCGACGAGTTGCTGA
TGTCCATCGCCTTCATGTGACTCTCGACCACCGCCCGCAGGCCATCCACC
CACTCCTGACGGGCCCTGGCATCGTTGGCCCTCAGCTTTACCGTATCGCC
GGAGGCGCAGGCGATGGCGAACGTCCTAGAGTCCTCGTCACTCGGGTACA
CCACTGCGCCGGCCAGCTGCACCTGGCCCCTGGGAGCACTGGCCAGGACG
TGGGGCGAGGGCGCGATGTCGTCGCCCACCGTCGACGAGTCGCACAGGTA
GTAGCTCAGCGATCCTGTCTTGGCGTCCACCGTAAACCAACGGTACTGCC
ATCCCTTCATCACATTGGTGTATTTGCTGAGCTGACCGCAGAGTTTCAGT
TTGGCCGATTCACGAATGATCCTGTTCAAGTTGCTCTCCATGTCGACTGA
TAACT
BS03667.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-PA | 675 | CG9205-RA | 1..675 | 691..17 | 3375 | 100 | Minus |
CG9205-PB | 675 | CG9205-RB | 1..675 | 691..17 | 3375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-RB | 941 | CG9205-RB | 190..864 | 691..17 | 3375 | 100 | Minus |
CG9205-RA | 1105 | CG9205-RA | 354..1028 | 691..17 | 3375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1035559..1035956 | 604..207 | 1990 | 100 | Minus |
3L | 28110227 | 3L | 1036031..1036221 | 207..17 | 955 | 100 | Minus |
3L | 28110227 | 3L | 1035374..1035462 | 691..603 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:57:05 has no hits.
BS03667.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:40 Download gff for
BS03667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-PB | 1..675 | 17..691 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:22 Download gff for
BS03667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-PB | 1..675 | 17..691 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:00:46 Download gff for
BS03667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1031 | 14..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:35 Download gff for
BS03667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1031 | 14..691 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:35 Download gff for
BS03667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1035560..1035956 | 207..603 | 100 | -> | Minus |
3L | 1035374..1035461 | 604..691 | 100 | -> | Minus |
3L | 1036032..1036224 | 14..206 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:00:46 Download gff for
BS03667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1035374..1035461 | 604..691 | 100 | -> | Minus |
arm_3L | 1035560..1035956 | 207..603 | 100 | -> | Minus |
arm_3L | 1036032..1036224 | 14..206 | 99 | -> | Minus |
BS03667.5prime Sequence
705 bp (704 high quality bases) assembled on 2005-11-29
> BS03667.5prime
GAAGTTATCAGTCGACATGGAGAGCAACTTGAACAGGATCATTCGTGAAT
CGGCCAAACTGAAACTCTGCGGTCAGCTCAGCAAATACACCAATGTGATG
AAGGGATGGCAGTACCGTTGGTTTACGGTGGACGCCAAGACAGGATCGCT
GAGCTACTACCTGTGCGACTCGTCGACGGTGGGCGACGACATCGCGCCCT
CGCCCCACGTCCTGGCCAGTGCTCCCAGGGGCCAGGTGCAGCTGGCCGGC
GCAGTGGTGTACCCGAGTGACGAGGACTCTAGGACGTTCGCCATCGCCTG
CGCCTCCGGCGATACGGTAAAGCTGAGGGCCAACGATGCCAGGGCCCGTC
AGGAGTGGGTGGATGGCCTGCGGGCGGTGGTCGAGAGTCACATGAAGGCG
ATGGACATCAGCAACTCGTCGCCGCTTCCTCCGCGGGAATTGCTTGCCGC
CTCCGATGCCATGGTTTCAGCGCGCCAAGCTCTGTTTCTCACGGAACAAT
GCAACGCTTCTCTGGCCAGGGCCATCGAGAGCATCGACTGCGCTTCCTTC
TCGCCAACGGATCCCGATCTTCTTTTGCTCAAGGCGATCTCCACGGCCAG
CACCCAGTGCCTGCACCAGTGCTTGGGATTACTGCAACGCCACCAGGAGA
TCAACCAGCCGGTGGCAGAGGCCGTGCCTCTTGTGCTTTGAAAGCTTTCT
AGACC
BS03667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-PA | 675 | CG9205-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
CG9205-PB | 675 | CG9205-RB | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-RB | 941 | CG9205-RB | 190..864 | 17..691 | 3375 | 100 | Plus |
CG9205-RA | 1105 | CG9205-RA | 354..1028 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1035559..1035956 | 104..501 | 1990 | 100 | Plus |
3L | 28110227 | 3L | 1036031..1036221 | 501..691 | 955 | 100 | Plus |
3L | 28110227 | 3L | 1035374..1035462 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:29:30 has no hits.
BS03667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:41 Download gff for
BS03667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-PB | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:24 Download gff for
BS03667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-PB | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:56 Download gff for
BS03667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1031 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:41 Download gff for
BS03667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1031 | 17..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:41 Download gff for
BS03667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1035374..1035461 | 17..104 | 100 | -> | Plus |
3L | 1035560..1035956 | 105..501 | 100 | -> | Plus |
3L | 1036032..1036224 | 502..694 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:56 Download gff for
BS03667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1035374..1035461 | 17..104 | 100 | -> | Plus |
arm_3L | 1035560..1035956 | 105..501 | 100 | -> | Plus |
arm_3L | 1036032..1036224 | 502..694 | 99 | -> | Plus |
BS03667.complete Sequence
707 bp (707 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634745
> BS03667.complete
GAAGTTATCAGTCGACATGGAGAGCAACTTGAACAGGATCATTCGTGAAT
CGGCCAAACTGAAACTCTGCGGTCAGCTCAGCAAATACACCAATGTGATG
AAGGGATGGCAGTACCGTTGGTTTACGGTGGACGCCAAGACAGGATCGCT
GAGCTACTACCTGTGCGACTCGTCGACGGTGGGCGACGACATCGCGCCCT
CGCCCCACGTCCTGGCCAGTGCTCCCAGGGGCCAGGTGCAGCTGGCCGGC
GCAGTGGTGTACCCGAGTGACGAGGACTCTAGGACGTTCGCCATCGCCTG
CGCCTCCGGCGATACGGTAAAGCTGAGGGCCAACGATGCCAGGGCCCGTC
AGGAGTGGGTGGATGGCCTGCGGGCGGTGGTCGAGAGTCACATGAAGGCG
ATGGACATCAGCAACTCGTCGCCGCTTCCTCCGCGGGAATTGCTTGCCGC
CTCCGATGCCATGGTTTCAGCGCGCCAAGCTCTGTTTCTCACGGAACAAT
GCAACGCTTCTCTGGCCAGGGCCATCGAGAGCATCGACTGCGCTTCCTTC
TCGCCAACGGATCCCGATCTTCTTTTGCTCAAGGCGATCTCCACGGCCAG
CACCCAGTGCCTGCACCAGTGCTTGGGATTACTGCAACGCCACCAGGAGA
TCAACCAGCCGGTGGCAGAGGCCGTGCCTCTTGTGCTTTGAAAGCTTTCT
AGACCAT
BS03667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-RB | 675 | CG9205-PB | 1..675 | 17..691 | 3375 | 100 | Plus |
CG9205-RA | 675 | CG9205-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-RB | 941 | CG9205-RB | 190..864 | 17..691 | 3375 | 100 | Plus |
CG9205-RA | 1105 | CG9205-RA | 354..1028 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1035559..1035956 | 104..501 | 1990 | 100 | Plus |
3L | 28110227 | 3L | 1036031..1036221 | 501..691 | 955 | 100 | Plus |
3L | 28110227 | 3L | 1035374..1035462 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:42:36 has no hits.
BS03667.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:54 Download gff for
BS03667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RB | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:06 Download gff for
BS03667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RB | 185..862 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:02 Download gff for
BS03667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1027 | 17..690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:54 Download gff for
BS03667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RB | 185..862 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:32 Download gff for
BS03667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1027 | 17..690 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:32 Download gff for
BS03667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1035374..1035461 | 17..104 | 100 | -> | Plus |
3L | 1035560..1035956 | 105..501 | 100 | -> | Plus |
3L | 1036032..1036220 | 502..690 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:02 Download gff for
BS03667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1035374..1035461 | 17..104 | 100 | -> | Plus |
arm_3L | 1035560..1035956 | 105..501 | 100 | -> | Plus |
arm_3L | 1036032..1036220 | 502..690 | 100 | | Plus |
BS03667.pep Sequence
Translation from 16 to 690
> BS03667.pep
MESNLNRIIRESAKLKLCGQLSKYTNVMKGWQYRWFTVDAKTGSLSYYLC
DSSTVGDDIAPSPHVLASAPRGQVQLAGAVVYPSDEDSRTFAIACASGDT
VKLRANDARARQEWVDGLRAVVESHMKAMDISNSSPLPPRELLAASDAMV
SARQALFLTEQCNASLARAIESIDCASFSPTDPDLLLLKAISTASTQCLH
QCLGLLQRHQEINQPVAEAVPLVL*
BS03667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-PB | 224 | CG9205-PB | 1..224 | 1..224 | 1142 | 100 | Plus |
CG9205-PA | 224 | CG9205-PA | 1..224 | 1..224 | 1142 | 100 | Plus |
CG1513-PA | 784 | CG1513-PA | 26..120 | 19..125 | 156 | 34.6 | Plus |