Clone BS03667 Report

Search the DGRC for BS03667

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG9205-RA
Protein status:BS03667.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03667.3prime Sequence

705 bp (704 high quality bases) assembled on 2005-12-01

> BS03667.3prime
ATGGTCTAGAAAGCTTTCAAAGCACAAGAGGCACGGCCTCTGCCACCGGC
TGGTTGATCTCCTGGTGGCGTTGCAGTAATCCCAAGCACTGGTGCAGGCA
CTGGGTGCTGGCCGTGGAGATCGCCTTGAGCAAAAGAAGATCGGGATCCG
TTGGCGAGAAGGAAGCGCAGTCGATGCTCTCGATGGCCCTGGCCAGAGAA
GCGTTGCATTGTTCCGTGAGAAACAGAGCTTGGCGCGCTGAAACCATGGC
ATCGGAGGCGGCAAGCAATTCCCGCGGAGGAAGCGGCGACGAGTTGCTGA
TGTCCATCGCCTTCATGTGACTCTCGACCACCGCCCGCAGGCCATCCACC
CACTCCTGACGGGCCCTGGCATCGTTGGCCCTCAGCTTTACCGTATCGCC
GGAGGCGCAGGCGATGGCGAACGTCCTAGAGTCCTCGTCACTCGGGTACA
CCACTGCGCCGGCCAGCTGCACCTGGCCCCTGGGAGCACTGGCCAGGACG
TGGGGCGAGGGCGCGATGTCGTCGCCCACCGTCGACGAGTCGCACAGGTA
GTAGCTCAGCGATCCTGTCTTGGCGTCCACCGTAAACCAACGGTACTGCC
ATCCCTTCATCACATTGGTGTATTTGCTGAGCTGACCGCAGAGTTTCAGT
TTGGCCGATTCACGAATGATCCTGTTCAAGTTGCTCTCCATGTCGACTGA
TAACT

BS03667.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-PA 675 CG9205-RA 1..675 691..17 3375 100 Minus
CG9205-PB 675 CG9205-RB 1..675 691..17 3375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-RB 941 CG9205-RB 190..864 691..17 3375 100 Minus
CG9205-RA 1105 CG9205-RA 354..1028 691..17 3375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1035559..1035956 604..207 1990 100 Minus
3L 28110227 3L 1036031..1036221 207..17 955 100 Minus
3L 28110227 3L 1035374..1035462 691..603 445 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:57:05 has no hits.

BS03667.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:40 Download gff for BS03667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-PB 1..675 17..691 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:22 Download gff for BS03667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-PB 1..675 17..691 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:00:46 Download gff for BS03667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1031 14..691 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:35 Download gff for BS03667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1031 14..691 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:35 Download gff for BS03667.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1035560..1035956 207..603 100 -> Minus
3L 1035374..1035461 604..691 100 -> Minus
3L 1036032..1036224 14..206 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:00:46 Download gff for BS03667.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1035374..1035461 604..691 100 -> Minus
arm_3L 1035560..1035956 207..603 100 -> Minus
arm_3L 1036032..1036224 14..206 99 -> Minus

BS03667.5prime Sequence

705 bp (704 high quality bases) assembled on 2005-11-29

> BS03667.5prime
GAAGTTATCAGTCGACATGGAGAGCAACTTGAACAGGATCATTCGTGAAT
CGGCCAAACTGAAACTCTGCGGTCAGCTCAGCAAATACACCAATGTGATG
AAGGGATGGCAGTACCGTTGGTTTACGGTGGACGCCAAGACAGGATCGCT
GAGCTACTACCTGTGCGACTCGTCGACGGTGGGCGACGACATCGCGCCCT
CGCCCCACGTCCTGGCCAGTGCTCCCAGGGGCCAGGTGCAGCTGGCCGGC
GCAGTGGTGTACCCGAGTGACGAGGACTCTAGGACGTTCGCCATCGCCTG
CGCCTCCGGCGATACGGTAAAGCTGAGGGCCAACGATGCCAGGGCCCGTC
AGGAGTGGGTGGATGGCCTGCGGGCGGTGGTCGAGAGTCACATGAAGGCG
ATGGACATCAGCAACTCGTCGCCGCTTCCTCCGCGGGAATTGCTTGCCGC
CTCCGATGCCATGGTTTCAGCGCGCCAAGCTCTGTTTCTCACGGAACAAT
GCAACGCTTCTCTGGCCAGGGCCATCGAGAGCATCGACTGCGCTTCCTTC
TCGCCAACGGATCCCGATCTTCTTTTGCTCAAGGCGATCTCCACGGCCAG
CACCCAGTGCCTGCACCAGTGCTTGGGATTACTGCAACGCCACCAGGAGA
TCAACCAGCCGGTGGCAGAGGCCGTGCCTCTTGTGCTTTGAAAGCTTTCT
AGACC

BS03667.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-PA 675 CG9205-RA 1..675 17..691 3375 100 Plus
CG9205-PB 675 CG9205-RB 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-RB 941 CG9205-RB 190..864 17..691 3375 100 Plus
CG9205-RA 1105 CG9205-RA 354..1028 17..691 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1035559..1035956 104..501 1990 100 Plus
3L 28110227 3L 1036031..1036221 501..691 955 100 Plus
3L 28110227 3L 1035374..1035462 17..105 445 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:29:30 has no hits.

BS03667.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:41 Download gff for BS03667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-PB 1..675 17..691 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:24 Download gff for BS03667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-PB 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:56 Download gff for BS03667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1031 17..694 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:41 Download gff for BS03667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1031 17..694 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:41 Download gff for BS03667.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1035374..1035461 17..104 100 -> Plus
3L 1035560..1035956 105..501 100 -> Plus
3L 1036032..1036224 502..694 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:56 Download gff for BS03667.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1035374..1035461 17..104 100 -> Plus
arm_3L 1035560..1035956 105..501 100 -> Plus
arm_3L 1036032..1036224 502..694 99 -> Plus

BS03667.complete Sequence

707 bp (707 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634745

> BS03667.complete
GAAGTTATCAGTCGACATGGAGAGCAACTTGAACAGGATCATTCGTGAAT
CGGCCAAACTGAAACTCTGCGGTCAGCTCAGCAAATACACCAATGTGATG
AAGGGATGGCAGTACCGTTGGTTTACGGTGGACGCCAAGACAGGATCGCT
GAGCTACTACCTGTGCGACTCGTCGACGGTGGGCGACGACATCGCGCCCT
CGCCCCACGTCCTGGCCAGTGCTCCCAGGGGCCAGGTGCAGCTGGCCGGC
GCAGTGGTGTACCCGAGTGACGAGGACTCTAGGACGTTCGCCATCGCCTG
CGCCTCCGGCGATACGGTAAAGCTGAGGGCCAACGATGCCAGGGCCCGTC
AGGAGTGGGTGGATGGCCTGCGGGCGGTGGTCGAGAGTCACATGAAGGCG
ATGGACATCAGCAACTCGTCGCCGCTTCCTCCGCGGGAATTGCTTGCCGC
CTCCGATGCCATGGTTTCAGCGCGCCAAGCTCTGTTTCTCACGGAACAAT
GCAACGCTTCTCTGGCCAGGGCCATCGAGAGCATCGACTGCGCTTCCTTC
TCGCCAACGGATCCCGATCTTCTTTTGCTCAAGGCGATCTCCACGGCCAG
CACCCAGTGCCTGCACCAGTGCTTGGGATTACTGCAACGCCACCAGGAGA
TCAACCAGCCGGTGGCAGAGGCCGTGCCTCTTGTGCTTTGAAAGCTTTCT
AGACCAT

BS03667.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-RB 675 CG9205-PB 1..675 17..691 3375 100 Plus
CG9205-RA 675 CG9205-PA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-RB 941 CG9205-RB 190..864 17..691 3375 100 Plus
CG9205-RA 1105 CG9205-RA 354..1028 17..691 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1035559..1035956 104..501 1990 100 Plus
3L 28110227 3L 1036031..1036221 501..691 955 100 Plus
3L 28110227 3L 1035374..1035462 17..105 445 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:42:36 has no hits.

BS03667.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:54 Download gff for BS03667.complete
Subject Subject Range Query Range Percent Splice Strand
CG9205-RB 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:06 Download gff for BS03667.complete
Subject Subject Range Query Range Percent Splice Strand
CG9205-RB 185..862 17..694 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:02 Download gff for BS03667.complete
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1027 17..690 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:54 Download gff for BS03667.complete
Subject Subject Range Query Range Percent Splice Strand
CG9205-RB 185..862 17..694 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:32 Download gff for BS03667.complete
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1027 17..690 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:32 Download gff for BS03667.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1035374..1035461 17..104 100 -> Plus
3L 1035560..1035956 105..501 100 -> Plus
3L 1036032..1036220 502..690 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:02 Download gff for BS03667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1035374..1035461 17..104 100 -> Plus
arm_3L 1035560..1035956 105..501 100 -> Plus
arm_3L 1036032..1036220 502..690 100   Plus

BS03667.pep Sequence

Translation from 16 to 690

> BS03667.pep
MESNLNRIIRESAKLKLCGQLSKYTNVMKGWQYRWFTVDAKTGSLSYYLC
DSSTVGDDIAPSPHVLASAPRGQVQLAGAVVYPSDEDSRTFAIACASGDT
VKLRANDARARQEWVDGLRAVVESHMKAMDISNSSPLPPRELLAASDAMV
SARQALFLTEQCNASLARAIESIDCASFSPTDPDLLLLKAISTASTQCLH
QCLGLLQRHQEINQPVAEAVPLVL*

BS03667.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-PB 224 CG9205-PB 1..224 1..224 1142 100 Plus
CG9205-PA 224 CG9205-PA 1..224 1..224 1142 100 Plus
CG1513-PA 784 CG1513-PA 26..120 19..125 156 34.6 Plus