Clone BS03670 Report

Search the DGRC for BS03670

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG9628-RA
Protein status:BS03670.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03670.3prime Sequence

519 bp (518 high quality bases) assembled on 2005-12-01

> BS03670.3prime
ATGGTCTAGAAAGCTTTCATTCTAGATCACCGTGGACACCTAAACGCAGG
GTGATGAGTATGTCCAGCAAGAAGACCAGCGAGGTAACCAAGGCAATCGA
GGCGGAAGCCATCACGAGATCCAAACGATGCATATTCGGGTGCCAGTAGT
TGCGATCCTTGGTGGTGGACCAATCCCGGAAAAGCAGGGCGGTTACGGCC
ACGAAGAGCACAAAGGCCACTAGATTCCACAAAGTAGCCGTACGCCATGG
AGTCAAATCACCGAAGAGCGCCATTATCAGATAGATTGCCGTGTAGATGG
TCAGTGCTCCAAAGGTCACATAGCAAAGGGAAGCCACTCGGGGAGTGATG
AACACCCGCAGATGAGAATTGGTGGCCGGCTCGTCGATCAGACCCAAACA
GCATATAAGCAGGCACAGTTCCACAATCTTGATGCATATCACCGTGTAGG
TGGCCTTTTTGTTTCCATGAGTTGTGGCAAAGGAATTATCGTCAGCCGGC
GACATGTCGACTGATAACT

BS03670.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-PB 528 CG9628-RB 34..528 511..17 2450 99.7 Minus
CG9628-PA 489 CG9628-RA 1..489 505..17 2445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 890 CG9628-RC 206..700 511..17 2460 99.8 Minus
CG9628-RB 1053 CG9628-RB 178..672 511..17 2460 99.8 Minus
CG9628-RA 1125 CG9628-RA 250..744 511..17 2460 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14627556..14627793 254..17 1190 100 Minus
3L 28110227 3L 14627334..14627496 416..254 815 100 Minus
3L 28110227 3L 14627031..14627126 511..416 465 99 Minus
Blast to na_te.dros performed on 2015-02-11 18:33:03 has no hits.

BS03670.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:44 Download gff for BS03670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 34..528 17..511 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:27 Download gff for BS03670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 34..528 17..511 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:48:03 Download gff for BS03670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 250..744 17..511 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:09:01 Download gff for BS03670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 250..744 17..511 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:09:01 Download gff for BS03670.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14627335..14627495 255..415 100 -> Minus
3L 14627556..14627793 17..254 100   Minus
3L 14627031..14627126 416..511 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:48:03 Download gff for BS03670.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14620131..14620226 416..511 98 -> Minus
arm_3L 14620435..14620595 255..415 100 -> Minus
arm_3L 14620656..14620893 17..254 100   Minus

BS03670.5prime Sequence

519 bp (518 high quality bases) assembled on 2005-11-29

> BS03670.5prime
GAAGTTATCAGTCGACATGTCGCCGGCTGACGATAATTCCTTTGCCACAA
CTCATGGAAACAAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTG
GAACTGTGCCTGCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCAC
CAATTCTCATCTGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCT
ATGTGACCTTTGGAGCACTGACCATCTACACGGCAATCTATCTGATAATG
GCGCTCTTCGGTGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCT
AGTGGCCTTTGTGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATT
GGTCCACCACCAAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTG
GATCTCGTGATGGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTT
CTTGCTGGACATACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAG
AATGAAAGCTTTCTAGACC

BS03670.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-PB 528 CG9628-RB 34..528 11..505 2450 99.7 Plus
CG9628-PA 489 CG9628-RA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 890 CG9628-RC 206..700 11..505 2460 99.8 Plus
CG9628-RB 1053 CG9628-RB 178..672 11..505 2460 99.8 Plus
CG9628-RA 1125 CG9628-RA 250..744 11..505 2460 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14627556..14627793 268..505 1190 100 Plus
3L 28110227 3L 14627334..14627496 106..268 815 100 Plus
3L 28110227 3L 14627031..14627126 11..106 465 99 Plus
Blast to na_te.dros performed on 2015-02-10 23:15:05 has no hits.

BS03670.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:45 Download gff for BS03670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 34..528 11..505 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:28 Download gff for BS03670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 34..528 11..505 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:07 Download gff for BS03670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 250..744 11..505 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:24:36 Download gff for BS03670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 250..744 11..505 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:24:36 Download gff for BS03670.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14627031..14627126 11..106 98 -> Plus
3L 14627335..14627495 107..267 100 -> Plus
3L 14627556..14627793 268..505 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:07 Download gff for BS03670.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14620131..14620226 11..106 98 -> Plus
arm_3L 14620435..14620595 107..267 100 -> Plus
arm_3L 14620656..14620893 268..505 100   Plus

BS03670.complete Sequence

521 bp (521 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634746

> BS03670.complete
GAAGTTATCAGTCGACATGTCGCCGGCTGACGATAATTCCTTTGCCACAA
CTCATGGAAACAAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTG
GAACTGTGCCTGCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCAC
CAATTCTCATCTGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCT
ATGTGACCTTTGGAGCACTGACCATCTACACGGCAATCTATCTGATAATG
GCGCTCTTCGGTGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCT
AGTGGCCTTTGTGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATT
GGTCCACCACCAAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTG
GATCTCGTGATGGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTT
CTTGCTGGACATACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAG
AATGAAAGCTTTCTAGACCAT

BS03670.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 528 CG9628-PC 34..528 11..505 2460 99.8 Plus
CG9628-RB 528 CG9628-PB 34..528 11..505 2460 99.8 Plus
CG9628-RA 489 CG9628-PA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 890 CG9628-RC 206..700 11..505 2460 99.8 Plus
CG9628-RB 1053 CG9628-RB 178..672 11..505 2460 99.8 Plus
CG9628-RA 1125 CG9628-RA 250..744 11..505 2460 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14627556..14627793 268..505 1190 100 Plus
3L 28110227 3L 14627334..14627496 106..268 815 100 Plus
3L 28110227 3L 14627031..14627126 11..106 465 99 Plus
Blast to na_te.dros performed on 2014-11-27 01:37:05 has no hits.

BS03670.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:56 Download gff for BS03670.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RB 34..528 11..505 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:08 Download gff for BS03670.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 236..730 11..505 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:13 Download gff for BS03670.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 256..743 17..504 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:56 Download gff for BS03670.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 236..730 11..505 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:59 Download gff for BS03670.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 256..743 17..504 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:59 Download gff for BS03670.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14627037..14627126 17..106 100 -> Plus
3L 14627335..14627495 107..267 100 -> Plus
3L 14627556..14627792 268..504 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:13 Download gff for BS03670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14620137..14620226 17..106 100 -> Plus
arm_3L 14620435..14620595 107..267 100 -> Plus
arm_3L 14620656..14620892 268..504 100   Plus

BS03670.pep Sequence

Translation from 16 to 504

> BS03670.pep
MSPADDNSFATTHGNKKATYTVICIKIVELCLLICCLGLIDEPATNSHLR
VFITPRVASLCYVTFGALTIYTAIYLIMALFGDLTPWRTATLWNLVAFVL
FVAVTALLFRDWSTTKDRNYWHPNMHRLDLVMASASIALVTSLVFLLDIL
ITLRLGVHGDLE*

BS03670.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-PA 162 CG9628-PA 1..162 1..162 844 100 Plus
CG9628-PC 175 CG9628-PC 14..175 1..162 844 100 Plus
CG9628-PB 175 CG9628-PB 14..175 1..162 844 100 Plus