Clone Sequence Records
BS03670.3prime Sequence
519 bp (518 high quality bases) assembled on 2005-12-01
> BS03670.3prime
ATGGTCTAGAAAGCTTTCATTCTAGATCACCGTGGACACCTAAACGCAGG
GTGATGAGTATGTCCAGCAAGAAGACCAGCGAGGTAACCAAGGCAATCGA
GGCGGAAGCCATCACGAGATCCAAACGATGCATATTCGGGTGCCAGTAGT
TGCGATCCTTGGTGGTGGACCAATCCCGGAAAAGCAGGGCGGTTACGGCC
ACGAAGAGCACAAAGGCCACTAGATTCCACAAAGTAGCCGTACGCCATGG
AGTCAAATCACCGAAGAGCGCCATTATCAGATAGATTGCCGTGTAGATGG
TCAGTGCTCCAAAGGTCACATAGCAAAGGGAAGCCACTCGGGGAGTGATG
AACACCCGCAGATGAGAATTGGTGGCCGGCTCGTCGATCAGACCCAAACA
GCATATAAGCAGGCACAGTTCCACAATCTTGATGCATATCACCGTGTAGG
TGGCCTTTTTGTTTCCATGAGTTGTGGCAAAGGAATTATCGTCAGCCGGC
GACATGTCGACTGATAACT
BS03670.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PB | 528 | CG9628-RB | 34..528 | 511..17 | 2450 | 99.7 | Minus |
CG9628-PA | 489 | CG9628-RA | 1..489 | 505..17 | 2445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 206..700 | 511..17 | 2460 | 99.8 | Minus |
CG9628-RB | 1053 | CG9628-RB | 178..672 | 511..17 | 2460 | 99.8 | Minus |
CG9628-RA | 1125 | CG9628-RA | 250..744 | 511..17 | 2460 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627793 | 254..17 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 14627334..14627496 | 416..254 | 815 | 100 | Minus |
3L | 28110227 | 3L | 14627031..14627126 | 511..416 | 465 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:33:03 has no hits.
BS03670.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:44 Download gff for
BS03670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 34..528 | 17..511 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:27 Download gff for
BS03670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 34..528 | 17..511 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:48:03 Download gff for
BS03670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 250..744 | 17..511 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:09:01 Download gff for
BS03670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 250..744 | 17..511 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:09:01 Download gff for
BS03670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14627335..14627495 | 255..415 | 100 | -> | Minus |
3L | 14627556..14627793 | 17..254 | 100 | | Minus |
3L | 14627031..14627126 | 416..511 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:48:03 Download gff for
BS03670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14620131..14620226 | 416..511 | 98 | -> | Minus |
arm_3L | 14620435..14620595 | 255..415 | 100 | -> | Minus |
arm_3L | 14620656..14620893 | 17..254 | 100 | | Minus |
BS03670.5prime Sequence
519 bp (518 high quality bases) assembled on 2005-11-29
> BS03670.5prime
GAAGTTATCAGTCGACATGTCGCCGGCTGACGATAATTCCTTTGCCACAA
CTCATGGAAACAAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTG
GAACTGTGCCTGCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCAC
CAATTCTCATCTGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCT
ATGTGACCTTTGGAGCACTGACCATCTACACGGCAATCTATCTGATAATG
GCGCTCTTCGGTGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCT
AGTGGCCTTTGTGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATT
GGTCCACCACCAAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTG
GATCTCGTGATGGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTT
CTTGCTGGACATACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAG
AATGAAAGCTTTCTAGACC
BS03670.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PB | 528 | CG9628-RB | 34..528 | 11..505 | 2450 | 99.7 | Plus |
CG9628-PA | 489 | CG9628-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 206..700 | 11..505 | 2460 | 99.8 | Plus |
CG9628-RB | 1053 | CG9628-RB | 178..672 | 11..505 | 2460 | 99.8 | Plus |
CG9628-RA | 1125 | CG9628-RA | 250..744 | 11..505 | 2460 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627793 | 268..505 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 14627334..14627496 | 106..268 | 815 | 100 | Plus |
3L | 28110227 | 3L | 14627031..14627126 | 11..106 | 465 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:15:05 has no hits.
BS03670.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:45 Download gff for
BS03670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 34..528 | 11..505 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:28 Download gff for
BS03670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 34..528 | 11..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:07 Download gff for
BS03670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 250..744 | 11..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:24:36 Download gff for
BS03670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 250..744 | 11..505 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:24:36 Download gff for
BS03670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14627031..14627126 | 11..106 | 98 | -> | Plus |
3L | 14627335..14627495 | 107..267 | 100 | -> | Plus |
3L | 14627556..14627793 | 268..505 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:07 Download gff for
BS03670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14620131..14620226 | 11..106 | 98 | -> | Plus |
arm_3L | 14620435..14620595 | 107..267 | 100 | -> | Plus |
arm_3L | 14620656..14620893 | 268..505 | 100 | | Plus |
BS03670.complete Sequence
521 bp (521 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634746
> BS03670.complete
GAAGTTATCAGTCGACATGTCGCCGGCTGACGATAATTCCTTTGCCACAA
CTCATGGAAACAAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTG
GAACTGTGCCTGCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCAC
CAATTCTCATCTGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCT
ATGTGACCTTTGGAGCACTGACCATCTACACGGCAATCTATCTGATAATG
GCGCTCTTCGGTGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCT
AGTGGCCTTTGTGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATT
GGTCCACCACCAAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTG
GATCTCGTGATGGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTT
CTTGCTGGACATACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAG
AATGAAAGCTTTCTAGACCAT
BS03670.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 528 | CG9628-PC | 34..528 | 11..505 | 2460 | 99.8 | Plus |
CG9628-RB | 528 | CG9628-PB | 34..528 | 11..505 | 2460 | 99.8 | Plus |
CG9628-RA | 489 | CG9628-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 206..700 | 11..505 | 2460 | 99.8 | Plus |
CG9628-RB | 1053 | CG9628-RB | 178..672 | 11..505 | 2460 | 99.8 | Plus |
CG9628-RA | 1125 | CG9628-RA | 250..744 | 11..505 | 2460 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627793 | 268..505 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 14627334..14627496 | 106..268 | 815 | 100 | Plus |
3L | 28110227 | 3L | 14627031..14627126 | 11..106 | 465 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:37:05 has no hits.
BS03670.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:56 Download gff for
BS03670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 34..528 | 11..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:08 Download gff for
BS03670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 236..730 | 11..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:13 Download gff for
BS03670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 256..743 | 17..504 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:56 Download gff for
BS03670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 236..730 | 11..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:59 Download gff for
BS03670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 256..743 | 17..504 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:59 Download gff for
BS03670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14627037..14627126 | 17..106 | 100 | -> | Plus |
3L | 14627335..14627495 | 107..267 | 100 | -> | Plus |
3L | 14627556..14627792 | 268..504 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:13 Download gff for
BS03670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14620137..14620226 | 17..106 | 100 | -> | Plus |
arm_3L | 14620435..14620595 | 107..267 | 100 | -> | Plus |
arm_3L | 14620656..14620892 | 268..504 | 100 | | Plus |
BS03670.pep Sequence
Translation from 16 to 504
> BS03670.pep
MSPADDNSFATTHGNKKATYTVICIKIVELCLLICCLGLIDEPATNSHLR
VFITPRVASLCYVTFGALTIYTAIYLIMALFGDLTPWRTATLWNLVAFVL
FVAVTALLFRDWSTTKDRNYWHPNMHRLDLVMASASIALVTSLVFLLDIL
ITLRLGVHGDLE*
BS03670.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PA | 162 | CG9628-PA | 1..162 | 1..162 | 844 | 100 | Plus |
CG9628-PC | 175 | CG9628-PC | 14..175 | 1..162 | 844 | 100 | Plus |
CG9628-PB | 175 | CG9628-PB | 14..175 | 1..162 | 844 | 100 | Plus |