Clone BS03671 Report

Search the DGRC for BS03671

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG3226-RA
Protein status:BS03671.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03671.3prime Sequence

723 bp (722 high quality bases) assembled on 2005-12-01

> BS03671.3prime
ATGGTCTAGAAAGCTTCTAAAGATCGTCGAAAGAATCCAATCCGCCGCCC
GTCTCCTTGCCAAGCTTCGCCTTATCCTGACTCTCGGTCCAAGCTTTGGC
GATCATCTGCTTCGTCTTGGAGTCACCGTCGTTGTACATCTTCTTCATGA
TGTTAACAAGCGCCGATTCGGGATTGTCGCCATCTTTGGACAATTCGCTG
TCCTTCTTTTGCTTCAAACGCTTCTGGATAGCGGTGAGCACATCCCAGTG
CTTGTCCTCAACCTTCTGCAGATAGATGGCCACCATGTCGGTCTTGATCT
TTCGGTAGCTCTTCTCCACATCGATACTGTGCAGCAGATTGTTTACGGTC
AGCCCAAAGTCCTTGCCCTGAAGATCGCGCACATGGAGCTGCAACGAGTT
AGGTGTGTAGGTGACTGTCACATTCTCCTCCGTGCAGCCCTGCACTCCGT
TCAAGGTGATGAAGAGCTTCACGAACTTGGCGCTCTGGTCCCAGCCGTAG
TCGGTCAGCTCGTGCAGATATCTCTTGGCTTCGCTCGACCCGGTGGCCTG
TCGCTCTGCCGCAATTTTGGCCTTCAACTCCAGATTGACAATCTCCCGTT
CCGCCTCCGCTTTAGCGGTGGTCAGCACGTCTTTTACGCGGGCACCTTTC
GCCTGCTGCAGGAAGGCCGCCAGCTCGGCCACATCGCTTTTCAGCTGTTC
CAATGACATGTCGACTGATAACT

BS03671.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-PA 693 CG3226-RA 1..693 709..17 3465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-RA 894 CG3226-RA 89..782 709..16 3470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6653225..6653732 16..523 2540 100 Plus
X 23542271 X 6653908..6654084 522..698 885 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:47:29 has no hits.

BS03671.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:46 Download gff for BS03671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-PA 1..693 17..709 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:29 Download gff for BS03671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-PA 1..693 17..709 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:04:18 Download gff for BS03671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..782 16..709 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:07 Download gff for BS03671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..782 16..709 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:07 Download gff for BS03671.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6653225..6653730 16..521 100 <- Plus
X 6653908..6654084 522..698 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:04:18 Download gff for BS03671.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6547258..6547763 16..521 100 <- Plus
arm_X 6547941..6548117 522..698 100   Plus

BS03671.5prime Sequence

723 bp (722 high quality bases) assembled on 2005-11-29

> BS03671.5prime
GAAGTTATCAGTCGACATGTCATTGGAACAGCTGAAAAGCGATGTGGCCG
AGCTGGCGGCCTTCCTGCAGCAGGCGAAAGGTGCCCGCGTAAAAGACGTG
CTGACCACCGCTAAAGCGGAGGCGGAACGGGAGATTGTCAATCTGGAGTT
GAAGGCCAAAATTGCGGCAGAGCGACAGGCCACCGGGTCGAGCGAAGCCA
AGAGATATCTGCACGAGCTGACCGACTACGGCTGGGACCAGAGCGCCAAG
TTCGTGAAGCTCTTCATCACCTTGAACGGAGTGCAGGGCTGCACGGAGGA
GAATGTGACAGTCACCTACACACCTAACTCGTTGCAGCTCCATGTGCGCG
ATCTTCAGGGCAAGGACTTTGGGCTGACCGTAAACAATCTGCTGCACAGT
ATCGATGTGGAGAAGAGCTACCGAAAGATCAAGACCGACATGGTGGCCAT
CTATCTGCAGAAGGTTGAGGACAAGCACTGGGATGTGCTCACCGCTATCC
AGAAGCGTTTGAAGCAAAAGAAGGACAGCGAATTGTCCAAAGATGGCGAC
AATCCCGAATCGGCGCTTGTTAACATCATGAAGAAGATGTACAACGACGG
TGACTCCAAGACGAAGCAGATGATCGCCAAAGCTTGGACCGAGAGTCAGG
ATAAGGCGAAGCTTGGCAAGGAGACGGGCGGCGGATTGGATTCTTTCGAC
GATCTTTAGAAGCTTTCTAGACC

BS03671.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-PA 693 CG3226-RA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-RA 894 CG3226-RA 89..782 17..710 3470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6653225..6653732 710..203 2540 100 Minus
X 23542271 X 6653908..6654084 204..28 885 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:16:32 has no hits.

BS03671.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:47 Download gff for BS03671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-PA 1..693 17..709 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:30 Download gff for BS03671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-PA 1..693 17..709 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:12 Download gff for BS03671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..782 17..710 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:03 Download gff for BS03671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..782 17..710 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:03 Download gff for BS03671.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6653225..6653730 205..710 100 <- Minus
X 6653908..6654084 28..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:12 Download gff for BS03671.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6547258..6547763 205..710 100 <- Minus
arm_X 6547941..6548117 28..204 100   Minus

BS03671.complete Sequence

725 bp (725 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634747

> BS03671.complete
GAAGTTATCAGTCGACATGTCATTGGAACAGCTGAAAAGCGATGTGGCCG
AGCTGGCGGCCTTCCTGCAGCAGGCGAAAGGTGCCCGCGTAAAAGACGTG
CTGACCACCGCTAAAGCGGAGGCGGAACGGGAGATTGTCAATCTGGAGTT
GAAGGCCAAAATTGCGGCAGAGCGACAGGCCACCGGGTCGAGCGAAGCCA
AGAGATATCTGCACGAGCTGACCGACTACGGCTGGGACCAGAGCGCCAAG
TTCGTGAAGCTCTTCATCACCTTGAACGGAGTGCAGGGCTGCACGGAGGA
GAATGTGACAGTCACCTACACACCTAACTCGTTGCAGCTCCATGTGCGCG
ATCTTCAGGGCAAGGACTTTGGGCTGACCGTAAACAATCTGCTGCACAGT
ATCGATGTGGAGAAGAGCTACCGAAAGATCAAGACCGACATGGTGGCCAT
CTATCTGCAGAAGGTTGAGGACAAGCACTGGGATGTGCTCACCGCTATCC
AGAAGCGTTTGAAGCAAAAGAAGGACAGCGAATTGTCCAAAGATGGCGAC
AATCCCGAATCGGCGCTTGTTAACATCATGAAGAAGATGTACAACGACGG
TGACTCCAAGACGAAGCAGATGATCGCCAAAGCTTGGACCGAGAGTCAGG
ATAAGGCGAAGCTTGGCAAGGAGACGGGCGGCGGATTGGATTCTTTCGAC
GATCTTTAGAAGCTTTCTAGACCAT

BS03671.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-RA 693 CG3226-PA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-RA 894 CG3226-RA 89..782 17..710 3470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6653225..6653732 710..203 2540 100 Minus
X 23542271 X 6653908..6654084 204..28 885 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:22:42 has no hits.

BS03671.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:57 Download gff for BS03671.complete
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 1..693 17..709 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:09 Download gff for BS03671.complete
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 27..720 17..710 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:14 Download gff for BS03671.complete
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..781 17..709 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:57 Download gff for BS03671.complete
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 27..720 17..710 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:16 Download gff for BS03671.complete
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..781 17..709 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:16 Download gff for BS03671.complete
Subject Subject Range Query Range Percent Splice Strand
X 6653226..6653730 205..709 100 <- Minus
X 6653908..6654084 28..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:14 Download gff for BS03671.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6547259..6547763 205..709 100 <- Minus
arm_X 6547941..6548117 28..204 100   Minus

BS03671.pep Sequence

Translation from 16 to 708

> BS03671.pep
MSLEQLKSDVAELAAFLQQAKGARVKDVLTTAKAEAEREIVNLELKAKIA
AERQATGSSEAKRYLHELTDYGWDQSAKFVKLFITLNGVQGCTEENVTVT
YTPNSLQLHVRDLQGKDFGLTVNNLLHSIDVEKSYRKIKTDMVAIYLQKV
EDKHWDVLTAIQKRLKQKKDSELSKDGDNPESALVNIMKKMYNDGDSKTK
QMIAKAWTESQDKAKLGKETGGGLDSFDDL*

BS03671.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-PA 230 CG3226-PA 1..230 1..230 1163 100 Plus