Clone Sequence Records
BS03671.3prime Sequence
723 bp (722 high quality bases) assembled on 2005-12-01
> BS03671.3prime
ATGGTCTAGAAAGCTTCTAAAGATCGTCGAAAGAATCCAATCCGCCGCCC
GTCTCCTTGCCAAGCTTCGCCTTATCCTGACTCTCGGTCCAAGCTTTGGC
GATCATCTGCTTCGTCTTGGAGTCACCGTCGTTGTACATCTTCTTCATGA
TGTTAACAAGCGCCGATTCGGGATTGTCGCCATCTTTGGACAATTCGCTG
TCCTTCTTTTGCTTCAAACGCTTCTGGATAGCGGTGAGCACATCCCAGTG
CTTGTCCTCAACCTTCTGCAGATAGATGGCCACCATGTCGGTCTTGATCT
TTCGGTAGCTCTTCTCCACATCGATACTGTGCAGCAGATTGTTTACGGTC
AGCCCAAAGTCCTTGCCCTGAAGATCGCGCACATGGAGCTGCAACGAGTT
AGGTGTGTAGGTGACTGTCACATTCTCCTCCGTGCAGCCCTGCACTCCGT
TCAAGGTGATGAAGAGCTTCACGAACTTGGCGCTCTGGTCCCAGCCGTAG
TCGGTCAGCTCGTGCAGATATCTCTTGGCTTCGCTCGACCCGGTGGCCTG
TCGCTCTGCCGCAATTTTGGCCTTCAACTCCAGATTGACAATCTCCCGTT
CCGCCTCCGCTTTAGCGGTGGTCAGCACGTCTTTTACGCGGGCACCTTTC
GCCTGCTGCAGGAAGGCCGCCAGCTCGGCCACATCGCTTTTCAGCTGTTC
CAATGACATGTCGACTGATAACT
BS03671.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-PA | 693 | CG3226-RA | 1..693 | 709..17 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-RA | 894 | CG3226-RA | 89..782 | 709..16 | 3470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6653225..6653732 | 16..523 | 2540 | 100 | Plus |
X | 23542271 | X | 6653908..6654084 | 522..698 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:47:29 has no hits.
BS03671.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:46 Download gff for
BS03671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-PA | 1..693 | 17..709 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:29 Download gff for
BS03671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-PA | 1..693 | 17..709 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:04:18 Download gff for
BS03671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..782 | 16..709 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:07 Download gff for
BS03671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..782 | 16..709 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:07 Download gff for
BS03671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6653225..6653730 | 16..521 | 100 | <- | Plus |
X | 6653908..6654084 | 522..698 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:04:18 Download gff for
BS03671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6547258..6547763 | 16..521 | 100 | <- | Plus |
arm_X | 6547941..6548117 | 522..698 | 100 | | Plus |
BS03671.5prime Sequence
723 bp (722 high quality bases) assembled on 2005-11-29
> BS03671.5prime
GAAGTTATCAGTCGACATGTCATTGGAACAGCTGAAAAGCGATGTGGCCG
AGCTGGCGGCCTTCCTGCAGCAGGCGAAAGGTGCCCGCGTAAAAGACGTG
CTGACCACCGCTAAAGCGGAGGCGGAACGGGAGATTGTCAATCTGGAGTT
GAAGGCCAAAATTGCGGCAGAGCGACAGGCCACCGGGTCGAGCGAAGCCA
AGAGATATCTGCACGAGCTGACCGACTACGGCTGGGACCAGAGCGCCAAG
TTCGTGAAGCTCTTCATCACCTTGAACGGAGTGCAGGGCTGCACGGAGGA
GAATGTGACAGTCACCTACACACCTAACTCGTTGCAGCTCCATGTGCGCG
ATCTTCAGGGCAAGGACTTTGGGCTGACCGTAAACAATCTGCTGCACAGT
ATCGATGTGGAGAAGAGCTACCGAAAGATCAAGACCGACATGGTGGCCAT
CTATCTGCAGAAGGTTGAGGACAAGCACTGGGATGTGCTCACCGCTATCC
AGAAGCGTTTGAAGCAAAAGAAGGACAGCGAATTGTCCAAAGATGGCGAC
AATCCCGAATCGGCGCTTGTTAACATCATGAAGAAGATGTACAACGACGG
TGACTCCAAGACGAAGCAGATGATCGCCAAAGCTTGGACCGAGAGTCAGG
ATAAGGCGAAGCTTGGCAAGGAGACGGGCGGCGGATTGGATTCTTTCGAC
GATCTTTAGAAGCTTTCTAGACC
BS03671.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-PA | 693 | CG3226-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-RA | 894 | CG3226-RA | 89..782 | 17..710 | 3470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6653225..6653732 | 710..203 | 2540 | 100 | Minus |
X | 23542271 | X | 6653908..6654084 | 204..28 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:16:32 has no hits.
BS03671.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:47 Download gff for
BS03671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-PA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:30 Download gff for
BS03671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-PA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:12 Download gff for
BS03671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..782 | 17..710 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:03 Download gff for
BS03671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..782 | 17..710 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:03 Download gff for
BS03671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6653225..6653730 | 205..710 | 100 | <- | Minus |
X | 6653908..6654084 | 28..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:12 Download gff for
BS03671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6547258..6547763 | 205..710 | 100 | <- | Minus |
arm_X | 6547941..6548117 | 28..204 | 100 | | Minus |
BS03671.complete Sequence
725 bp (725 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634747
> BS03671.complete
GAAGTTATCAGTCGACATGTCATTGGAACAGCTGAAAAGCGATGTGGCCG
AGCTGGCGGCCTTCCTGCAGCAGGCGAAAGGTGCCCGCGTAAAAGACGTG
CTGACCACCGCTAAAGCGGAGGCGGAACGGGAGATTGTCAATCTGGAGTT
GAAGGCCAAAATTGCGGCAGAGCGACAGGCCACCGGGTCGAGCGAAGCCA
AGAGATATCTGCACGAGCTGACCGACTACGGCTGGGACCAGAGCGCCAAG
TTCGTGAAGCTCTTCATCACCTTGAACGGAGTGCAGGGCTGCACGGAGGA
GAATGTGACAGTCACCTACACACCTAACTCGTTGCAGCTCCATGTGCGCG
ATCTTCAGGGCAAGGACTTTGGGCTGACCGTAAACAATCTGCTGCACAGT
ATCGATGTGGAGAAGAGCTACCGAAAGATCAAGACCGACATGGTGGCCAT
CTATCTGCAGAAGGTTGAGGACAAGCACTGGGATGTGCTCACCGCTATCC
AGAAGCGTTTGAAGCAAAAGAAGGACAGCGAATTGTCCAAAGATGGCGAC
AATCCCGAATCGGCGCTTGTTAACATCATGAAGAAGATGTACAACGACGG
TGACTCCAAGACGAAGCAGATGATCGCCAAAGCTTGGACCGAGAGTCAGG
ATAAGGCGAAGCTTGGCAAGGAGACGGGCGGCGGATTGGATTCTTTCGAC
GATCTTTAGAAGCTTTCTAGACCAT
BS03671.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-RA | 693 | CG3226-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-RA | 894 | CG3226-RA | 89..782 | 17..710 | 3470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6653225..6653732 | 710..203 | 2540 | 100 | Minus |
X | 23542271 | X | 6653908..6654084 | 204..28 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:22:42 has no hits.
BS03671.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:57 Download gff for
BS03671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:09 Download gff for
BS03671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 27..720 | 17..710 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:14 Download gff for
BS03671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..781 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:57 Download gff for
BS03671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 27..720 | 17..710 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:16 Download gff for
BS03671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..781 | 17..709 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:16 Download gff for
BS03671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6653226..6653730 | 205..709 | 100 | <- | Minus |
X | 6653908..6654084 | 28..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:14 Download gff for
BS03671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6547259..6547763 | 205..709 | 100 | <- | Minus |
arm_X | 6547941..6548117 | 28..204 | 100 | | Minus |
BS03671.pep Sequence
Translation from 16 to 708
> BS03671.pep
MSLEQLKSDVAELAAFLQQAKGARVKDVLTTAKAEAEREIVNLELKAKIA
AERQATGSSEAKRYLHELTDYGWDQSAKFVKLFITLNGVQGCTEENVTVT
YTPNSLQLHVRDLQGKDFGLTVNNLLHSIDVEKSYRKIKTDMVAIYLQKV
EDKHWDVLTAIQKRLKQKKDSELSKDGDNPESALVNIMKKMYNDGDSKTK
QMIAKAWTESQDKAKLGKETGGGLDSFDDL*
BS03671.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-PA | 230 | CG3226-PA | 1..230 | 1..230 | 1163 | 100 | Plus |