Clone Sequence Records
BS03672.3prime Sequence
630 bp (629 high quality bases) assembled on 2005-12-01
> BS03672.3prime
ATGGTCTAGAAAGCTTTTAATAGCCACCCCTGCCCGGTGGTGGTGCTCCA
CGGATCATGCTGGGCGGCGGTCCGCGCATCGGTGGCGGAGCACCGCGTCC
CATGTTTCCTGGCATCGAGGGCATGCCGCCGGGAATCATGCCCGGTGGCG
GTGCACCCATCATCGGTGCTCGTGGCACTCCTCGTCCCATCGGAGCCATG
TGCTGTTGGGCGGGTCCGCCCACACCTCTCACGGGACCCTGGAGACCCGC
TGGCACGGCGGACAAGTTGATAGGCATTCCGCGTCCGGCCACGCGACCGA
TTCCCGGACCAGGAGCTGCTCCCGGAATGGGAACTCGGGGCAGGCCCTCC
TCTGGCGGCGGTGGTCCCTCCACCGTCAGTGAAACTATGTTCTCGCCGCG
CAGCAATACAAAGCCCAGCACGCGCTTCTCCTCGCGCTCGGGCACCTTGG
AATTCTTCGAGCGAATCTTCCGGAACTCCTCGCAGTCGCCGAGGATCAAG
TTCATGTGTTTGTCGAAGGCTTTGAAGGTACCGATGAAGGTACGCGAGTC
CTGCAGCACGATTCGCACCCGATAATTCAGGTGCTGAATCATTTTGTTGT
TCTTGCCGATCGTCATGTCGACTGATAACT
BS03672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5352-PA | 600 | SmB-RA | 1..600 | 616..17 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmB-RB | 776 | CG5352-RB | 132..731 | 616..17 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10425528..10426125 | 17..614 | 2990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:55:39 has no hits.
BS03672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:48 Download gff for
BS03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmB-PA | 1..600 | 17..616 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:32 Download gff for
BS03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5352-PA | 1..600 | 17..616 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:21 Download gff for
BS03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmB-RB | 132..731 | 17..616 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:49 Download gff for
BS03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmB-RB | 132..731 | 17..616 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:49 Download gff for
BS03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10425528..10426127 | 17..617 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:21 Download gff for
BS03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10425528..10426127 | 17..617 | 99 | | Plus |
BS03672.5prime Sequence
630 bp (629 high quality bases) assembled on 2005-12-01
> BS03672.5prime
GAAGTTATCAGTCGACATGACGATCGGCAAGAACAACAAAATGATTCAGC
ACCTGAATTATCGGGTGCGAATCGTGCTGCAGGACTCGCGTACCTTCATC
GGTACCTTCAAAGCCTTCGACAAACACATGAACTTGATCCTCGGCGACTG
CGAGGAGTTCCGGAAGATTCGCTCGAAGAATTCCAAGGTGCCCGAGCGCG
AGGAGAAGCGCGTGCTGGGCTTTGTATTGCTGCGCGGCGAGAACATAGTT
TCACTGACGGTGGAGGGACCACCGCCGCCAGAGGAGGGCCTGCCCCGAGT
TCCCATTCCGGGAGCAGCTCCTGGTCCGGGAATCGGTCGCGTGGCCGGAC
GCGGAATGCCTATCAACTTGTCCGCCGTGCCAGCGGGTCTCCAGGGTCCC
GTGAGAGGTGTGGGCGGACCCGCCCAACAGCACATGGCTCCGATGGGACG
AGGAGTGCCACGAGCACCGATGATGGGTGCACCGCCACCGGGCATGATTC
CCGGCGGCATGCCCTCGATGCCAGGAAACATGGGACGCGGTGCTCCGCCA
CCGATGCGCGGACCGCCGCCCAGCATGATCCGTGGAGCACCACCACCGGG
CAGGGGTGGCTATTAAAAGCTTTCTAGACC
BS03672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5352-PA | 600 | SmB-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmB-RB | 776 | CG5352-RB | 132..731 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10425528..10426125 | 616..19 | 2990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:29:00 has no hits.
BS03672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:49 Download gff for
BS03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmB-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:34 Download gff for
BS03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5352-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:51:26 Download gff for
BS03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmB-RB | 132..731 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:56:25 Download gff for
BS03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmB-RB | 132..731 | 17..616 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:56:25 Download gff for
BS03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10425528..10426127 | 16..616 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:51:26 Download gff for
BS03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10425528..10426127 | 16..616 | 99 | | Minus |
BS03672.complete Sequence
632 bp assembled on 2007-10-17
GenBank Submission: FJ634748
> BS03672.complete
GAAGTTATCAGTCGACATGACGATCGGCAAGAACAACAAAATGATTCAGC
ACCTGAATTATCGGGTGCGAATCGTGCTGCAGGACTCGCGTACCTTCATC
GGTACCTTCAAAGCCTTCGACAAACACATGAACTTGATCCTCGGCGACTG
CGAGGAGTTCCGGAAGATTCGCTCGAAGAATTCCAAGGTGCCCGAGCGCG
AGGAGAAGCGCGTGCTGGGCTTTGTATTGCTGCGCGGCGAGAACATAGTT
TCACTGACGGTGGAGGGACCACCGCCGCCAGAGGAGGGCCTGCCCCGAGT
TCCCATTCCGGGAGCAGCTCCTGGTCCGGGAATCGGTCGCGTGGCCGGAC
GCGGAATGCCTATCAACTTGTCCGCCGTGCCAGCGGGTCTCCAGGGTCCC
GTGAGAGGTGTGGGCGGACCCGCCCAACAGCACATGGCTCCGATGGGACG
AGGAGTGCCACGAGCACCGATGATGGGTGCACCGCCACCGGGCATGATTC
CCGGCGGCATGCCCTCGATGCCAGGAAACATGGGACGCGGTGCTCCGCCA
CCGATGCGCGGACCGCCGCCCAGCATGATCCGTGGAGCACCACCACCGGG
CAGGGGTGGCTATTAAAAGCTTTCTAGACCAT
BS03672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmB-RB | 600 | CG5352-PB | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmB-RB | 776 | CG5352-RB | 132..731 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10425528..10426125 | 616..19 | 2990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:20:52 has no hits.
BS03672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:25 Download gff for
BS03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmB-RA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:33:11 Download gff for
BS03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmB-RA | 296..895 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:57 Download gff for
BS03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmB-RB | 132..729 | 17..614 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:37 Download gff for
BS03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmB-RA | 296..893 | 17..614 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:48 Download gff for
BS03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmB-RB | 132..729 | 17..614 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:48 Download gff for
BS03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10425530..10426126 | 17..614 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:57 Download gff for
BS03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10425530..10426126 | 17..614 | 99 | | Minus |
BS03672.pep Sequence
Translation from 16 to 615
> BS03672.pep
MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRK
IRSKNSKVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGA
APGPGIGRVAGRGMPINLSAVPAGLQGPVRGVGGPAQQHMAPMGRGVPRA
PMMGAPPPGMIPGGMPSMPGNMGRGAPPPMRGPPPSMIRGAPPPGRGGY*
BS03672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmB-PB | 199 | CG5352-PB | 1..199 | 1..199 | 1069 | 100 | Plus |
