Clone BS03673 Report

Search the DGRC for BS03673

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptAP-1sigma-RA
Protein status:BS03673.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03673.3prime Sequence

504 bp (503 high quality bases) assembled on 2005-12-01

> BS03673.3prime
ATGGTCTAGAAAGCTTTTAGCCCAGGCCGTGATCGTCGAAGAAACTCTGC
GGGGTCTCATCCTCTTGGAGCAGATCCTGCGAGGCAATCGCCTTAAGTAC
GTTCTTTTTGGACGTCTCCTGGATTTCGCCGCCAATGAGCAGCTCATCCA
GGATAAAGTATGCTTTTTCAAAGTTAAAGATAATGTCCAGCTCGCAGACG
CTGCCGAAGTACTTATCCAACAGCTCCACATAGCGATGAATGATCTCCAG
TGTCAGCAGTTCGTTGTCGTTCTGCTCGATGGCGCAACAGAAATACAAGC
TGGCATACCTTTTGTAGACAATTTTGCAGTCCTTCCACTCCAGAAAGGAG
CACATTTTGGGCTTGCGGGCCAGTATCGTAGTGACCAGTTCCCGGGTGAT
CTTCTTTTTCACCTTATCCGGATAGGCCATGTACCACTTTTGTAACCGCA
GTTTGCCCTGCCGACTAAACAGCAGCATGAAAAGCATCATGTCGACTGAT
AACT

BS03673.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5864-PA 474 AP-1sigma-RA 1..474 490..17 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-RA 1079 CG5864-RA 146..619 490..17 2370 100 Minus
AP-1sigma-RC 795 CG5864-RC 146..576 490..60 2155 100 Minus
AP-1sigma-RB 1181 CG5864-RB 146..576 490..60 2155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23959031..23959212 488..307 910 100 Minus
3R 32079331 3R 23959456..23959594 199..61 695 100 Minus
3R 32079331 3R 23959278..23959390 310..198 565 100 Minus
3R 32079331 3R 23962049..23962095 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:29:28 has no hits.

BS03673.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:50 Download gff for BS03673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5864-PA 1..474 17..490 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:35 Download gff for BS03673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5864-PA 1..474 17..490 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:22:44 Download gff for BS03673.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 146..622 11..490 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:44 Download gff for BS03673.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 146..622 11..490 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:44 Download gff for BS03673.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23959456..23959593 62..199 100 -> Minus
3R 23962051..23962098 11..61 94   Minus
3R 23959027..23959210 309..495 98 -> Minus
3R 23959280..23959388 200..308 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:22:44 Download gff for BS03673.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19785002..19785110 200..308 100 -> Minus
arm_3R 19785178..19785315 62..199 100 -> Minus
arm_3R 19784749..19784932 309..495 98 -> Minus
arm_3R 19787773..19787820 11..61 94   Minus

BS03673.5prime Sequence

504 bp (503 high quality bases) assembled on 2005-11-29

> BS03673.5prime
GAAGTTATCAGTCGACATGATGCTTTTCATGCTGCTGTTTAGTCGGCAGG
GCAAACTGCGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAA
AAGAAGATCACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAA
AATGTGCTCCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGT
ATGCCAGCTTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTG
CTGACACTGGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTT
CGGCAGCGTCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACT
TTATCCTGGATGAGCTGCTCATTGGCGGCGAAATCCAGGAGACGTCCAAA
AAGAACGTACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGATGA
GACCCCGCAGAGTTTCTTCGACGATCACGGCCTGGGCTAAAAGCTTTCTA
GACC

BS03673.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5864-PA 474 AP-1sigma-RA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-RA 1079 CG5864-RA 146..619 17..490 2370 100 Plus
AP-1sigma-RC 795 CG5864-RC 146..576 17..447 2155 100 Plus
AP-1sigma-RB 1181 CG5864-RB 146..576 17..447 2155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23959031..23959212 19..200 910 100 Plus
3R 32079331 3R 23959456..23959594 308..446 695 100 Plus
3R 32079331 3R 23959278..23959390 197..309 565 100 Plus
3R 32079331 3R 23962049..23962095 444..490 235 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:43:41 has no hits.

BS03673.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:51 Download gff for BS03673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5864-PA 1..474 17..490 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:37 Download gff for BS03673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5864-PA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:51:55 Download gff for BS03673.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 146..622 17..496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:29 Download gff for BS03673.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 146..622 17..496 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:29 Download gff for BS03673.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23959456..23959593 308..445 100 -> Plus
3R 23962051..23962098 446..496 94   Plus
3R 23959027..23959210 12..198 98 -> Plus
3R 23959280..23959388 199..307 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:51:55 Download gff for BS03673.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19784749..19784932 12..198 98 -> Plus
arm_3R 19785002..19785110 199..307 100 -> Plus
arm_3R 19785178..19785315 308..445 100 -> Plus
arm_3R 19787773..19787820 446..496 94   Plus

BS03673.complete Sequence

506 bp (506 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634749

> BS03673.complete
GAAGTTATCAGTCGACATGATGCTTTTCATGCTGCTGTTTAGTCGGCAGG
GCAAACTGCGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAA
AAGAAGATCACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAA
AATGTGCTCCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGT
ATGCCAGCTTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTG
CTGACACTGGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTT
CGGCAGCGTCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACT
TTATCCTGGATGAGCTGCTCATTGGCGGCGAAATCCAGGAGACGTCCAAA
AAGAACGTACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGATGA
GACCCCGCAGAGTTTCTTCGACGATCACGGCCTGGGCTAAAAGCTTTCTA
GACCAT

BS03673.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-RA 474 CG5864-PA 1..474 17..490 2370 100 Plus
AP-1sigma-RC 474 CG5864-PC 1..431 17..447 2155 100 Plus
AP-1sigma-RB 474 CG5864-PB 1..431 17..447 2155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-RA 1079 CG5864-RA 146..619 17..490 2370 100 Plus
AP-1sigma-RC 795 CG5864-RC 146..576 17..447 2155 100 Plus
AP-1sigma-RB 1181 CG5864-RB 146..576 17..447 2155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23959031..23959212 19..200 910 100 Plus
3R 32079331 3R 23959456..23959594 308..446 695 100 Plus
3R 32079331 3R 23959278..23959390 197..309 565 100 Plus
3R 32079331 3R 23962049..23962095 444..490 235 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:11:29 has no hits.

BS03673.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:33 Download gff for BS03673.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:40 Download gff for BS03673.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 143..619 17..496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:14 Download gff for BS03673.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 146..617 17..488 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:33 Download gff for BS03673.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 143..619 17..496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:02 Download gff for BS03673.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 146..617 17..488 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:02 Download gff for BS03673.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23959030..23959210 17..198 99 -> Plus
3R 23959280..23959388 199..307 100 -> Plus
3R 23959456..23959593 308..445 100 -> Plus
3R 23962051..23962093 446..488 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:14 Download gff for BS03673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19784752..19784932 17..198 99 -> Plus
arm_3R 19785002..19785110 199..307 100 -> Plus
arm_3R 19785178..19785315 308..445 100 -> Plus
arm_3R 19787773..19787815 446..488 100   Plus

BS03673.pep Sequence

Translation from 16 to 489

> BS03673.pep
MMLFMLLFSRQGKLRLQKWYMAYPDKVKKKITRELVTTILARKPKMCSFL
EWKDCKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCE
LDIIFNFEKAYFILDELLIGGEIQETSKKNVLKAIASQDLLQEDETPQSF
FDDHGLG*

BS03673.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-PA 157 CG5864-PA 1..157 1..157 821 100 Plus
AP-1sigma-PC 157 CG5864-PC 1..156 1..156 761 94.9 Plus
AP-1sigma-PB 157 CG5864-PB 1..156 1..156 761 94.9 Plus
AP-1sigma-PD 152 CG5864-PD 1..145 1..145 746 99.3 Plus
AP-2sigma-PA 142 CG6056-PA 1..142 1..142 366 46.5 Plus