Clone Sequence Records
BS03673.3prime Sequence
504 bp (503 high quality bases) assembled on 2005-12-01
> BS03673.3prime
ATGGTCTAGAAAGCTTTTAGCCCAGGCCGTGATCGTCGAAGAAACTCTGC
GGGGTCTCATCCTCTTGGAGCAGATCCTGCGAGGCAATCGCCTTAAGTAC
GTTCTTTTTGGACGTCTCCTGGATTTCGCCGCCAATGAGCAGCTCATCCA
GGATAAAGTATGCTTTTTCAAAGTTAAAGATAATGTCCAGCTCGCAGACG
CTGCCGAAGTACTTATCCAACAGCTCCACATAGCGATGAATGATCTCCAG
TGTCAGCAGTTCGTTGTCGTTCTGCTCGATGGCGCAACAGAAATACAAGC
TGGCATACCTTTTGTAGACAATTTTGCAGTCCTTCCACTCCAGAAAGGAG
CACATTTTGGGCTTGCGGGCCAGTATCGTAGTGACCAGTTCCCGGGTGAT
CTTCTTTTTCACCTTATCCGGATAGGCCATGTACCACTTTTGTAACCGCA
GTTTGCCCTGCCGACTAAACAGCAGCATGAAAAGCATCATGTCGACTGAT
AACT
BS03673.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5864-PA | 474 | AP-1sigma-RA | 1..474 | 490..17 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RA | 1079 | CG5864-RA | 146..619 | 490..17 | 2370 | 100 | Minus |
AP-1sigma-RC | 795 | CG5864-RC | 146..576 | 490..60 | 2155 | 100 | Minus |
AP-1sigma-RB | 1181 | CG5864-RB | 146..576 | 490..60 | 2155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23959031..23959212 | 488..307 | 910 | 100 | Minus |
3R | 32079331 | 3R | 23959456..23959594 | 199..61 | 695 | 100 | Minus |
3R | 32079331 | 3R | 23959278..23959390 | 310..198 | 565 | 100 | Minus |
3R | 32079331 | 3R | 23962049..23962095 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:29:28 has no hits.
BS03673.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:50 Download gff for
BS03673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5864-PA | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:35 Download gff for
BS03673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5864-PA | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:22:44 Download gff for
BS03673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..622 | 11..490 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:44 Download gff for
BS03673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..622 | 11..490 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:44 Download gff for
BS03673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23959456..23959593 | 62..199 | 100 | -> | Minus |
3R | 23962051..23962098 | 11..61 | 94 | | Minus |
3R | 23959027..23959210 | 309..495 | 98 | -> | Minus |
3R | 23959280..23959388 | 200..308 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:22:44 Download gff for
BS03673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19785002..19785110 | 200..308 | 100 | -> | Minus |
arm_3R | 19785178..19785315 | 62..199 | 100 | -> | Minus |
arm_3R | 19784749..19784932 | 309..495 | 98 | -> | Minus |
arm_3R | 19787773..19787820 | 11..61 | 94 | | Minus |
BS03673.5prime Sequence
504 bp (503 high quality bases) assembled on 2005-11-29
> BS03673.5prime
GAAGTTATCAGTCGACATGATGCTTTTCATGCTGCTGTTTAGTCGGCAGG
GCAAACTGCGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAA
AAGAAGATCACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAA
AATGTGCTCCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGT
ATGCCAGCTTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTG
CTGACACTGGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTT
CGGCAGCGTCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACT
TTATCCTGGATGAGCTGCTCATTGGCGGCGAAATCCAGGAGACGTCCAAA
AAGAACGTACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGATGA
GACCCCGCAGAGTTTCTTCGACGATCACGGCCTGGGCTAAAAGCTTTCTA
GACC
BS03673.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5864-PA | 474 | AP-1sigma-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RA | 1079 | CG5864-RA | 146..619 | 17..490 | 2370 | 100 | Plus |
AP-1sigma-RC | 795 | CG5864-RC | 146..576 | 17..447 | 2155 | 100 | Plus |
AP-1sigma-RB | 1181 | CG5864-RB | 146..576 | 17..447 | 2155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23959031..23959212 | 19..200 | 910 | 100 | Plus |
3R | 32079331 | 3R | 23959456..23959594 | 308..446 | 695 | 100 | Plus |
3R | 32079331 | 3R | 23959278..23959390 | 197..309 | 565 | 100 | Plus |
3R | 32079331 | 3R | 23962049..23962095 | 444..490 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:43:41 has no hits.
BS03673.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:51 Download gff for
BS03673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5864-PA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:37 Download gff for
BS03673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5864-PA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:51:55 Download gff for
BS03673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..622 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:29 Download gff for
BS03673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..622 | 17..496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:29 Download gff for
BS03673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23959456..23959593 | 308..445 | 100 | -> | Plus |
3R | 23962051..23962098 | 446..496 | 94 | | Plus |
3R | 23959027..23959210 | 12..198 | 98 | -> | Plus |
3R | 23959280..23959388 | 199..307 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:51:55 Download gff for
BS03673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19784749..19784932 | 12..198 | 98 | -> | Plus |
arm_3R | 19785002..19785110 | 199..307 | 100 | -> | Plus |
arm_3R | 19785178..19785315 | 308..445 | 100 | -> | Plus |
arm_3R | 19787773..19787820 | 446..496 | 94 | | Plus |
BS03673.complete Sequence
506 bp (506 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634749
> BS03673.complete
GAAGTTATCAGTCGACATGATGCTTTTCATGCTGCTGTTTAGTCGGCAGG
GCAAACTGCGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAA
AAGAAGATCACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAA
AATGTGCTCCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGT
ATGCCAGCTTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTG
CTGACACTGGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTT
CGGCAGCGTCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACT
TTATCCTGGATGAGCTGCTCATTGGCGGCGAAATCCAGGAGACGTCCAAA
AAGAACGTACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGATGA
GACCCCGCAGAGTTTCTTCGACGATCACGGCCTGGGCTAAAAGCTTTCTA
GACCAT
BS03673.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RA | 474 | CG5864-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
AP-1sigma-RC | 474 | CG5864-PC | 1..431 | 17..447 | 2155 | 100 | Plus |
AP-1sigma-RB | 474 | CG5864-PB | 1..431 | 17..447 | 2155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RA | 1079 | CG5864-RA | 146..619 | 17..490 | 2370 | 100 | Plus |
AP-1sigma-RC | 795 | CG5864-RC | 146..576 | 17..447 | 2155 | 100 | Plus |
AP-1sigma-RB | 1181 | CG5864-RB | 146..576 | 17..447 | 2155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23959031..23959212 | 19..200 | 910 | 100 | Plus |
3R | 32079331 | 3R | 23959456..23959594 | 308..446 | 695 | 100 | Plus |
3R | 32079331 | 3R | 23959278..23959390 | 197..309 | 565 | 100 | Plus |
3R | 32079331 | 3R | 23962049..23962095 | 444..490 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:11:29 has no hits.
BS03673.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:33 Download gff for
BS03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:40 Download gff for
BS03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 143..619 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:14 Download gff for
BS03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..617 | 17..488 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:33 Download gff for
BS03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 143..619 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:02 Download gff for
BS03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..617 | 17..488 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:02 Download gff for
BS03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23959030..23959210 | 17..198 | 99 | -> | Plus |
3R | 23959280..23959388 | 199..307 | 100 | -> | Plus |
3R | 23959456..23959593 | 308..445 | 100 | -> | Plus |
3R | 23962051..23962093 | 446..488 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:14 Download gff for
BS03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19784752..19784932 | 17..198 | 99 | -> | Plus |
arm_3R | 19785002..19785110 | 199..307 | 100 | -> | Plus |
arm_3R | 19785178..19785315 | 308..445 | 100 | -> | Plus |
arm_3R | 19787773..19787815 | 446..488 | 100 | | Plus |
BS03673.pep Sequence
Translation from 16 to 489
> BS03673.pep
MMLFMLLFSRQGKLRLQKWYMAYPDKVKKKITRELVTTILARKPKMCSFL
EWKDCKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCE
LDIIFNFEKAYFILDELLIGGEIQETSKKNVLKAIASQDLLQEDETPQSF
FDDHGLG*
BS03673.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-PA | 157 | CG5864-PA | 1..157 | 1..157 | 821 | 100 | Plus |
AP-1sigma-PC | 157 | CG5864-PC | 1..156 | 1..156 | 761 | 94.9 | Plus |
AP-1sigma-PB | 157 | CG5864-PB | 1..156 | 1..156 | 761 | 94.9 | Plus |
AP-1sigma-PD | 152 | CG5864-PD | 1..145 | 1..145 | 746 | 99.3 | Plus |
AP-2sigma-PA | 142 | CG6056-PA | 1..142 | 1..142 | 366 | 46.5 | Plus |