Clone Sequence Records
BS03674.3prime Sequence
750 bp (749 high quality bases) assembled on 2005-12-01
> BS03674.3prime
ATGGTCTAGAAAGCTTCTATAATTCCGGAACGTACTCGAATCCGGGATTA
TTGTACTTGAAGCGGGCTATCTTAAAGTGCAGCGATGCCTCGTGTATGTC
CGAAATGCGTTTCAGCTGCTCCTGGATTTTCTCTCCATAGAAGGCAGACG
GTTCTTTCGCGGCAGATTGATCAGATGTGACATCCGCGACTTCGTAGATA
ATCTCACTGGAACCATCGAGCCTTAGCTTTTTCGCGGCACTGTGACCATT
GATGATCGTTGGGTTGGCTTGCTCGTGAGGCTCTGCTATGAACTGCTGGT
ACTGCACCTCCTCCTCCTCCTCCTCATCCACCAACTCCTCCAGGTTCTCA
TTCTCTTCTTCATCCAGTTCCTCTTGCTCCTCCATCAGTTCGTGCAGGCG
CATCGAAATTCCCTCGCGAAAATTCGGTTCTAAGGAGAAGATCTGCAGGG
CTCTGTTCTCCAGAGGAGTCATTGCATTGCTCTTGTCATCCGAGTTGATG
CTGCGTCGGTATTTGGAGCGCGTGCTGTTCTTCCAGTCGTTGAGGCGCTT
TCGCCATTCCTCGGGCGACAAAGTGGGACCCGTGGAGCACTTGTTTAGCA
GATCGCTGAGCTCCTTCCACTTCTTGCCGTCCTGGGTGCGACTCAGTTTG
TTGGCCGACATCGGGGGATTCTCCTCCATGAAGTCTAGGTATACTTCGTA
TTGGTAGTACGACGTCCGCTTGTTGCGTCGATTCATGTCGACTGATAACT
BS03674.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15107-PA | 720 | CG15107-RA | 1..720 | 736..17 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15107-RA | 1106 | CG15107-RA | 105..824 | 736..17 | 3600 | 100 | Minus |
CG15107-RB | 1118 | CG15107-RB | 105..836 | 736..17 | 3470 | 98.4 | Minus |
prod-RA | 1597 | CG18608-RA | 260..386 | 626..500 | 290 | 81.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18971829..18972188 | 190..549 | 1800 | 100 | Plus |
2R | 25286936 | 2R | 18972245..18972433 | 548..736 | 945 | 100 | Plus |
2R | 25286936 | 2R | 18971591..18971765 | 17..191 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:59:25 has no hits.
BS03674.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:52 Download gff for
BS03674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-PA | 1..720 | 17..736 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:39 Download gff for
BS03674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-PA | 1..720 | 17..736 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:06:01 Download gff for
BS03674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-RA | 105..824 | 17..736 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:53:52 Download gff for
BS03674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-RA | 105..824 | 17..736 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:53:52 Download gff for
BS03674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18971591..18971763 | 17..189 | 100 | <- | Plus |
2R | 18971829..18972186 | 190..547 | 100 | <- | Plus |
2R | 18972245..18972433 | 548..736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:06:01 Download gff for
BS03674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14859750..14859938 | 548..736 | 100 | | Plus |
arm_2R | 14859096..14859268 | 17..189 | 100 | <- | Plus |
arm_2R | 14859334..14859691 | 190..547 | 100 | <- | Plus |
BS03674.5prime Sequence
750 bp (749 high quality bases) assembled on 2005-11-29
> BS03674.5prime
GAAGTTATCAGTCGACATGAATCGACGCAACAAGCGGACGTCGTACTACC
AATACGAAGTATACCTAGACTTCATGGAGGAGAATCCCCCGATGTCGGCC
AACAAACTGAGTCGCACCCAGGACGGCAAGAAGTGGAAGGAGCTCAGCGA
TCTGCTAAACAAGTGCTCCACGGGTCCCACTTTGTCGCCCGAGGAATGGC
GAAAGCGCCTCAACGACTGGAAGAACAGCACGCGCTCCAAATACCGACGC
AGCATCAACTCGGATGACAAGAGCAATGCAATGACTCCTCTGGAGAACAG
AGCCCTGCAGATCTTCTCCTTAGAACCGAATTTTCGCGAGGGAATTTCGA
TGCGCCTGCACGAACTGATGGAGGAGCAAGAGGAACTGGATGAAGAAGAG
AATGAGAACCTGGAGGAGTTGGTGGATGAGGAGGAGGAGGAGGAGGTGCA
GTACCAGCAGTTCATAGCAGAGCCTCACGAGCAAGCCAACCCAACGATCA
TCAATGGTCACAGTGCCGCGAAAAAGCTAAGGCTCGATGGTTCCAGTGAG
ATTATCTACGAAGTCGCGGATGTCACATCTGATCAATCTGCCGCGAAAGA
ACCGTCTGCCTTCTATGGAGAGAAAATCCAGGAGCAGCTGAAACGCATTT
CGGACATACACGAGGCATCGCTGCACTTTAAGATAGCCCGCTTCAAGTAC
AATAATCCCGGATTCGAGTACGTTCCGGAATTATAGAAGCTTTCTAGACC
BS03674.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15107-PA | 720 | CG15107-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15107-RA | 1106 | CG15107-RA | 105..824 | 17..736 | 3600 | 100 | Plus |
CG15107-RB | 1118 | CG15107-RB | 105..836 | 17..736 | 3470 | 98.4 | Plus |
prod-RA | 1597 | CG18608-RA | 260..386 | 127..253 | 290 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18971829..18972188 | 563..204 | 1800 | 100 | Minus |
2R | 25286936 | 2R | 18972245..18972433 | 205..17 | 945 | 100 | Minus |
2R | 25286936 | 2R | 18971591..18971765 | 736..562 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:16:13 has no hits.
BS03674.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:53 Download gff for
BS03674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-PA | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:40 Download gff for
BS03674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-PA | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:09 Download gff for
BS03674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-RA | 105..824 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:20 Download gff for
BS03674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-RA | 105..824 | 17..736 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:20 Download gff for
BS03674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18971591..18971763 | 564..736 | 100 | <- | Minus |
2R | 18971829..18972186 | 206..563 | 100 | <- | Minus |
2R | 18972245..18972433 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:09 Download gff for
BS03674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14859096..14859268 | 564..736 | 100 | <- | Minus |
arm_2R | 14859334..14859691 | 206..563 | 100 | <- | Minus |
arm_2R | 14859750..14859938 | 17..205 | 100 | | Minus |
BS03674.complete Sequence
752 bp (752 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634750
> BS03674.complete
GAAGTTATCAGTCGACATGAATCGACGCAACAAGCGGACGTCGTACTACC
AATACGAAGTATACCTAGACTTCATGGAGGAGAATCCCCCGATGTCGGCC
AACAAACTGAGTCGCACCCAGGACGGCAAGAAGTGGAAGGAGCTCAGCGA
TCTGCTAAACAAGTGCTCCACGGGTCCCACTTTGTCGCCCGAGGAATGGC
GAAAGCGCCTCAACGACTGGAAGAACAGCACGCGCTCCAAATACCGACGC
AGCATCAACTCGGATGACAAGAGCAATGCAATGACTCCTCTGGAGAACAG
AGCCCTGCAGATCTTCTCCTTAGAACCGAATTTTCGCGAGGGAATTTCGA
TGCGCCTGCACGAACTGATGGAGGAGCAAGAGGAACTGGATGAAGAAGAG
AATGAGAACCTGGAGGAGTTGGTGGATGAGGAGGAGGAGGAGGAGGTGCA
GTACCAGCAGTTCATAGCAGAGCCTCACGAGCAAGCCAACCCAACGATCA
TCAATGGTCACAGTGCCGCGAAAAAGCTAAGGCTCGATGGTTCCAGTGAG
ATTATCTACGAAGTCGCGGATGTCACATCTGATCAATCTGCCGCGAAAGA
ACCGTCTGCCTTCTATGGAGAGAAAATCCAGGAGCAGCTGAAACGCATTT
CGGACATACACGAGGCATCGCTGCACTTTAAGATAGCCCGCTTCAAGTAC
AATAATCCCGGATTCGAGTACGTTCCGGAATTATAGAAGCTTTCTAGACC
AT
BS03674.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15107-RA | 720 | CG15107-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
CG15107-RB | 732 | CG15107-PB | 1..732 | 17..736 | 3445 | 98.4 | Plus |
prod-RA | 1041 | CG18608-PA | 135..261 | 127..253 | 290 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15107-RA | 1106 | CG15107-RA | 105..824 | 17..736 | 3600 | 100 | Plus |
CG15107-RB | 1118 | CG15107-RB | 105..836 | 17..736 | 3445 | 98.4 | Plus |
prod-RA | 1597 | CG18608-RA | 260..386 | 127..253 | 290 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18971829..18972188 | 563..204 | 1800 | 100 | Minus |
2R | 25286936 | 2R | 18972245..18972433 | 205..17 | 945 | 100 | Minus |
2R | 25286936 | 2R | 18971591..18971765 | 736..562 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:08:54 has no hits.
BS03674.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:34 Download gff for
BS03674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-RA | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:41 Download gff for
BS03674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-RA | 2..725 | 13..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:08 Download gff for
BS03674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-RA | 105..824 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:34 Download gff for
BS03674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-RA | 2..725 | 13..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:52 Download gff for
BS03674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15107-RA | 105..824 | 17..736 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:52 Download gff for
BS03674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18971591..18971763 | 564..736 | 100 | <- | Minus |
2R | 18971829..18972186 | 206..563 | 100 | <- | Minus |
2R | 18972245..18972433 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:08 Download gff for
BS03674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14859750..14859938 | 17..205 | 100 | | Minus |
arm_2R | 14859096..14859268 | 564..736 | 100 | <- | Minus |
arm_2R | 14859334..14859691 | 206..563 | 100 | <- | Minus |
BS03674.pep Sequence
Translation from 16 to 735
> BS03674.pep
MNRRNKRTSYYQYEVYLDFMEENPPMSANKLSRTQDGKKWKELSDLLNKC
STGPTLSPEEWRKRLNDWKNSTRSKYRRSINSDDKSNAMTPLENRALQIF
SLEPNFREGISMRLHELMEEQEELDEEENENLEELVDEEEEEEVQYQQFI
AEPHEQANPTIINGHSAAKKLRLDGSSEIIYEVADVTSDQSAAKEPSAFY
GEKIQEQLKRISDIHEASLHFKIARFKYNNPGFEYVPEL*
BS03674.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15107-PA | 239 | CG15107-PA | 1..239 | 1..239 | 1246 | 100 | Plus |
CG15107-PB | 243 | CG15107-PB | 1..243 | 1..239 | 1231 | 98.4 | Plus |
prod-PA | 346 | CG18608-PA | 5..343 | 1..237 | 414 | 33.6 | Plus |