Clone BS03674 Report

Search the DGRC for BS03674

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG15107-RA
Protein status:BS03674.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03674.3prime Sequence

750 bp (749 high quality bases) assembled on 2005-12-01

> BS03674.3prime
ATGGTCTAGAAAGCTTCTATAATTCCGGAACGTACTCGAATCCGGGATTA
TTGTACTTGAAGCGGGCTATCTTAAAGTGCAGCGATGCCTCGTGTATGTC
CGAAATGCGTTTCAGCTGCTCCTGGATTTTCTCTCCATAGAAGGCAGACG
GTTCTTTCGCGGCAGATTGATCAGATGTGACATCCGCGACTTCGTAGATA
ATCTCACTGGAACCATCGAGCCTTAGCTTTTTCGCGGCACTGTGACCATT
GATGATCGTTGGGTTGGCTTGCTCGTGAGGCTCTGCTATGAACTGCTGGT
ACTGCACCTCCTCCTCCTCCTCCTCATCCACCAACTCCTCCAGGTTCTCA
TTCTCTTCTTCATCCAGTTCCTCTTGCTCCTCCATCAGTTCGTGCAGGCG
CATCGAAATTCCCTCGCGAAAATTCGGTTCTAAGGAGAAGATCTGCAGGG
CTCTGTTCTCCAGAGGAGTCATTGCATTGCTCTTGTCATCCGAGTTGATG
CTGCGTCGGTATTTGGAGCGCGTGCTGTTCTTCCAGTCGTTGAGGCGCTT
TCGCCATTCCTCGGGCGACAAAGTGGGACCCGTGGAGCACTTGTTTAGCA
GATCGCTGAGCTCCTTCCACTTCTTGCCGTCCTGGGTGCGACTCAGTTTG
TTGGCCGACATCGGGGGATTCTCCTCCATGAAGTCTAGGTATACTTCGTA
TTGGTAGTACGACGTCCGCTTGTTGCGTCGATTCATGTCGACTGATAACT

BS03674.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15107-PA 720 CG15107-RA 1..720 736..17 3600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG15107-RA 1106 CG15107-RA 105..824 736..17 3600 100 Minus
CG15107-RB 1118 CG15107-RB 105..836 736..17 3470 98.4 Minus
prod-RA 1597 CG18608-RA 260..386 626..500 290 81.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18971829..18972188 190..549 1800 100 Plus
2R 25286936 2R 18972245..18972433 548..736 945 100 Plus
2R 25286936 2R 18971591..18971765 17..191 875 100 Plus
Blast to na_te.dros performed on 2015-02-03 13:59:25 has no hits.

BS03674.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:52 Download gff for BS03674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15107-PA 1..720 17..736 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:39 Download gff for BS03674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15107-PA 1..720 17..736 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:06:01 Download gff for BS03674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15107-RA 105..824 17..736 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:53:52 Download gff for BS03674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15107-RA 105..824 17..736 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:53:52 Download gff for BS03674.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18971591..18971763 17..189 100 <- Plus
2R 18971829..18972186 190..547 100 <- Plus
2R 18972245..18972433 548..736 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:06:01 Download gff for BS03674.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14859750..14859938 548..736 100   Plus
arm_2R 14859096..14859268 17..189 100 <- Plus
arm_2R 14859334..14859691 190..547 100 <- Plus

BS03674.5prime Sequence

750 bp (749 high quality bases) assembled on 2005-11-29

> BS03674.5prime
GAAGTTATCAGTCGACATGAATCGACGCAACAAGCGGACGTCGTACTACC
AATACGAAGTATACCTAGACTTCATGGAGGAGAATCCCCCGATGTCGGCC
AACAAACTGAGTCGCACCCAGGACGGCAAGAAGTGGAAGGAGCTCAGCGA
TCTGCTAAACAAGTGCTCCACGGGTCCCACTTTGTCGCCCGAGGAATGGC
GAAAGCGCCTCAACGACTGGAAGAACAGCACGCGCTCCAAATACCGACGC
AGCATCAACTCGGATGACAAGAGCAATGCAATGACTCCTCTGGAGAACAG
AGCCCTGCAGATCTTCTCCTTAGAACCGAATTTTCGCGAGGGAATTTCGA
TGCGCCTGCACGAACTGATGGAGGAGCAAGAGGAACTGGATGAAGAAGAG
AATGAGAACCTGGAGGAGTTGGTGGATGAGGAGGAGGAGGAGGAGGTGCA
GTACCAGCAGTTCATAGCAGAGCCTCACGAGCAAGCCAACCCAACGATCA
TCAATGGTCACAGTGCCGCGAAAAAGCTAAGGCTCGATGGTTCCAGTGAG
ATTATCTACGAAGTCGCGGATGTCACATCTGATCAATCTGCCGCGAAAGA
ACCGTCTGCCTTCTATGGAGAGAAAATCCAGGAGCAGCTGAAACGCATTT
CGGACATACACGAGGCATCGCTGCACTTTAAGATAGCCCGCTTCAAGTAC
AATAATCCCGGATTCGAGTACGTTCCGGAATTATAGAAGCTTTCTAGACC

BS03674.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15107-PA 720 CG15107-RA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15107-RA 1106 CG15107-RA 105..824 17..736 3600 100 Plus
CG15107-RB 1118 CG15107-RB 105..836 17..736 3470 98.4 Plus
prod-RA 1597 CG18608-RA 260..386 127..253 290 81.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18971829..18972188 563..204 1800 100 Minus
2R 25286936 2R 18972245..18972433 205..17 945 100 Minus
2R 25286936 2R 18971591..18971765 736..562 875 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:16:13 has no hits.

BS03674.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:53 Download gff for BS03674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15107-PA 1..720 17..736 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:40 Download gff for BS03674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15107-PA 1..720 17..736 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:09 Download gff for BS03674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15107-RA 105..824 17..736 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:20 Download gff for BS03674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15107-RA 105..824 17..736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:20 Download gff for BS03674.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18971591..18971763 564..736 100 <- Minus
2R 18971829..18972186 206..563 100 <- Minus
2R 18972245..18972433 17..205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:09 Download gff for BS03674.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14859096..14859268 564..736 100 <- Minus
arm_2R 14859334..14859691 206..563 100 <- Minus
arm_2R 14859750..14859938 17..205 100   Minus

BS03674.complete Sequence

752 bp (752 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634750

> BS03674.complete
GAAGTTATCAGTCGACATGAATCGACGCAACAAGCGGACGTCGTACTACC
AATACGAAGTATACCTAGACTTCATGGAGGAGAATCCCCCGATGTCGGCC
AACAAACTGAGTCGCACCCAGGACGGCAAGAAGTGGAAGGAGCTCAGCGA
TCTGCTAAACAAGTGCTCCACGGGTCCCACTTTGTCGCCCGAGGAATGGC
GAAAGCGCCTCAACGACTGGAAGAACAGCACGCGCTCCAAATACCGACGC
AGCATCAACTCGGATGACAAGAGCAATGCAATGACTCCTCTGGAGAACAG
AGCCCTGCAGATCTTCTCCTTAGAACCGAATTTTCGCGAGGGAATTTCGA
TGCGCCTGCACGAACTGATGGAGGAGCAAGAGGAACTGGATGAAGAAGAG
AATGAGAACCTGGAGGAGTTGGTGGATGAGGAGGAGGAGGAGGAGGTGCA
GTACCAGCAGTTCATAGCAGAGCCTCACGAGCAAGCCAACCCAACGATCA
TCAATGGTCACAGTGCCGCGAAAAAGCTAAGGCTCGATGGTTCCAGTGAG
ATTATCTACGAAGTCGCGGATGTCACATCTGATCAATCTGCCGCGAAAGA
ACCGTCTGCCTTCTATGGAGAGAAAATCCAGGAGCAGCTGAAACGCATTT
CGGACATACACGAGGCATCGCTGCACTTTAAGATAGCCCGCTTCAAGTAC
AATAATCCCGGATTCGAGTACGTTCCGGAATTATAGAAGCTTTCTAGACC
AT

BS03674.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15107-RA 720 CG15107-PA 1..720 17..736 3600 100 Plus
CG15107-RB 732 CG15107-PB 1..732 17..736 3445 98.4 Plus
prod-RA 1041 CG18608-PA 135..261 127..253 290 81.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15107-RA 1106 CG15107-RA 105..824 17..736 3600 100 Plus
CG15107-RB 1118 CG15107-RB 105..836 17..736 3445 98.4 Plus
prod-RA 1597 CG18608-RA 260..386 127..253 290 81.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18971829..18972188 563..204 1800 100 Minus
2R 25286936 2R 18972245..18972433 205..17 945 100 Minus
2R 25286936 2R 18971591..18971765 736..562 875 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:08:54 has no hits.

BS03674.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:34 Download gff for BS03674.complete
Subject Subject Range Query Range Percent Splice Strand
CG15107-RA 1..720 17..736 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:41 Download gff for BS03674.complete
Subject Subject Range Query Range Percent Splice Strand
CG15107-RA 2..725 13..736 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:08 Download gff for BS03674.complete
Subject Subject Range Query Range Percent Splice Strand
CG15107-RA 105..824 17..736 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:34 Download gff for BS03674.complete
Subject Subject Range Query Range Percent Splice Strand
CG15107-RA 2..725 13..736 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:52 Download gff for BS03674.complete
Subject Subject Range Query Range Percent Splice Strand
CG15107-RA 105..824 17..736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:52 Download gff for BS03674.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18971591..18971763 564..736 100 <- Minus
2R 18971829..18972186 206..563 100 <- Minus
2R 18972245..18972433 17..205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:08 Download gff for BS03674.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14859750..14859938 17..205 100   Minus
arm_2R 14859096..14859268 564..736 100 <- Minus
arm_2R 14859334..14859691 206..563 100 <- Minus

BS03674.pep Sequence

Translation from 16 to 735

> BS03674.pep
MNRRNKRTSYYQYEVYLDFMEENPPMSANKLSRTQDGKKWKELSDLLNKC
STGPTLSPEEWRKRLNDWKNSTRSKYRRSINSDDKSNAMTPLENRALQIF
SLEPNFREGISMRLHELMEEQEELDEEENENLEELVDEEEEEEVQYQQFI
AEPHEQANPTIINGHSAAKKLRLDGSSEIIYEVADVTSDQSAAKEPSAFY
GEKIQEQLKRISDIHEASLHFKIARFKYNNPGFEYVPEL*

BS03674.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15107-PA 239 CG15107-PA 1..239 1..239 1246 100 Plus
CG15107-PB 243 CG15107-PB 1..243 1..239 1231 98.4 Plus
prod-PA 346 CG18608-PA 5..343 1..237 414 33.6 Plus