Clone Sequence Records
BS03676.3prime Sequence
933 bp (819 high quality bases) assembled on 2005-12-01
> BS03676.3prime
ATGGTCTAGAAAGCTTTCAGTAGGCTGGCCTTATCATGGGCTTCCCTTCG
ATGGCGTTCAAAATATTATTGGCAGCAAGCAATCCCATTTCAATGGTAGT
CTTCATTGTCTGAGTGCCCATATGGGGAAGGATAACACAATTGGGCACAT
TGAGAAGAGGACTATTGGCGGGCAGTGGTTCTGGTGTGGTCACATCCAAG
CCTGCGGCAGAAATTGTACCATTTGTCAGGGCGTCATGAAGGTCAGTTTG
ATTTACCAGACCTCCTCTGGCCACATTGACAAACACAGAACTCCTCTTCA
TCAGATTAAATGCCTTTCCATTGAATTTCTCTCTAGTTTCGTTTGTAAGT
GGAGCAGCTACCACCAGGAAGTCACTTTCTTGTAAAAGTTGTTCAAACGA
CACATGCTCTGCCTTGAAGTCGCCATCGTTTTCCTTTCGGGTGCGAGTAT
GGTAGATGATCTTGGCCACATCCCAGCACTGCAATCGCTTGGCGATGGCC
TGACTAATACCGCCAAAGCCAAAGAAACCGATGACGGAATCGCGAATCTC
TTGACCCATCATCCAGTTGATCTGCTCGATTTTCCATTGGGACCTCTCGA
TTTCGGTGCGACCGGCATGAAAGTGACGACCGGCTGCAATCATCAAGCCA
ATGGCGAGATCGGCCACTGCATTTTTCACCACCCCGGGAGTGTGGCCCAA
TGGGATTCCCCTCTTCTGGAACTCCGGAATATCCACAAAATCGATTCCGG
AGGACATGGTGCTCACGCAACGCAGCTGGGATCCAGCAGCATCCAGGATT
CCGGCATTCAGGGGCTGGTAATGGGCCCAATAGATGGCATCCACGCCGGG
CACCTTCTGCAGGATCTCATCCCTCGAGGGCGGCACACTCTGGCAGATGA
TGGTCTCCGCTCCACGGGATCGGAGCAGTTCCA
BS03676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-PA | 981 | CG31673-RA | 65..981 | 933..17 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-RA | 1126 | CG31673-RA | 126..1042 | 933..17 | 4585 | 100 | Minus |
CG31673-RB | 1221 | CG31673-RB | 126..1039 | 933..17 | 4530 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20829734..20830075 | 933..592 | 1710 | 100 | Minus |
2L | 23513712 | 2L | 20830279..20830614 | 595..260 | 1680 | 100 | Minus |
2L | 23513712 | 2L | 20830669..20830796 | 263..136 | 640 | 100 | Minus |
2L | 23513712 | 2L | 20830860..20830979 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:55:22 has no hits.
BS03676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:57 Download gff for
BS03676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-PA | 66..981 | 17..932 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:44 Download gff for
BS03676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-PA | 66..981 | 17..932 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:19 Download gff for
BS03676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 127..1042 | 17..932 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:15 Download gff for
BS03676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 127..1042 | 17..932 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:15 Download gff for
BS03676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20829735..20830073 | 594..932 | 100 | -> | Minus |
2L | 20830281..20830612 | 262..593 | 100 | -> | Minus |
2L | 20830671..20830796 | 136..261 | 100 | -> | Minus |
2L | 20830861..20830979 | 17..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:19 Download gff for
BS03676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20829735..20830073 | 594..932 | 100 | -> | Minus |
arm_2L | 20830281..20830612 | 262..593 | 100 | -> | Minus |
arm_2L | 20830671..20830796 | 136..261 | 100 | -> | Minus |
arm_2L | 20830861..20830979 | 17..135 | 100 | | Minus |
BS03676.5prime Sequence
913 bp (807 high quality bases) assembled on 2005-12-01
> BS03676.5prime
GAAGTTATCAGTCGACATGTCTCGTGCGACCAGGGCTTTTAAAGTGCTGA
TTTCGCATCCAAATGTCCCAGCACCGGCTCTGGAACTGCTCCGATCCCGT
GGAGCGGAGACCATCATCTGCCAGAGTGTGCCGCCCTCGAGGGATGAGAT
CCTGCAGAAGGTGCCCGGCGTGGATGCCATCTATTGGGCCCATTACCAGC
CCCTGAATGCCGGAATCCTGGATGCTGCTGGATCCCAGCTGCGTTGCGTG
AGCACCATGTCCTCCGGAATCGATTTTGTGGATATTCCGGAGTTCCAGAA
GAGGGGAATCCCATTGGGCCACACTCCCGGGGTGGTGAAAAATGCAGTGG
CCGATCTCGCCATTGGCTTGATGATTGCAGCCGGTCGTCACTTTCATGCC
GGTCGCACCGAAATCGAGAGGTCCCAATGGAAAATCGAGCAGATCAACTG
GATGATGGGTCAAGAGATTCGCGATTCCGTCATCGGTTTCTTTGGCTTTG
GCGGTATTAGTCAGGCCATCGCCAAGCGATTGCAGTGCTGGGATGTGGCC
AAGATCATCTACCATACTCGCACCCGAAAGGAAAACGATGGCGACTTCAA
GGCAGAGCATGTGTCGTTTGAACAACTTTTACAAGAAAGTGACTTCCTGG
TGGTAGCTGCTCCACTTACAAACGAAACTAGAGAGAAATTCAATGGAAAG
GCATTTAATCTGATGAAGAGGAGTTCTGTGTTTGTCAATGTGGCCAGAGG
AGGTCTGGTAAATCAAACTGACCTTCATGACGCCCTGACAAATGGTACAA
TTTCTGCCGCAGGCTTGGATGTGACCACACCAGAACCACTGCCCGCCAAT
AGTCCTCTTCTCGATGTGCCCAATTGTGTTATCCTTCCCCATATGGGCAC
TCAGACAATGAAA
BS03676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-PA | 981 | CG31673-RA | 1..896 | 17..912 | 4455 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-RA | 1126 | CG31673-RA | 58..957 | 13..912 | 4470 | 99.8 | Plus |
CG31673-RB | 1221 | CG31673-RB | 58..954 | 13..912 | 4415 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20829666..20830075 | 13..422 | 2035 | 99.8 | Plus |
2L | 23513712 | 2L | 20830279..20830614 | 419..754 | 1680 | 100 | Plus |
2L | 23513712 | 2L | 20830669..20830796 | 751..878 | 625 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:40:57 has no hits.
BS03676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:57 Download gff for
BS03676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:45 Download gff for
BS03676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:49:49 Download gff for
BS03676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 53..955 | 8..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:13 Download gff for
BS03676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 53..955 | 8..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:13 Download gff for
BS03676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20830281..20830612 | 421..752 | 100 | -> | Plus |
2L | 20830671..20830796 | 753..878 | 99 | -> | Plus |
2L | 20830861..20830892 | 879..910 | 100 | | Plus |
2L | 20829661..20830073 | 8..420 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:49:49 Download gff for
BS03676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20829661..20830073 | 8..420 | 99 | -> | Plus |
arm_2L | 20830281..20830612 | 421..752 | 100 | -> | Plus |
arm_2L | 20830671..20830796 | 753..878 | 99 | -> | Plus |
arm_2L | 20830861..20830892 | 879..910 | 100 | | Plus |
BS03676.complete Sequence
1013 bp (1013 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634751
> BS03676.complete
GAAGTTATCAGTCGACATGTCTCGTGCGACCAGGGCTTTTAAAGTGCTGA
TTTCGCATCCAAATGTCCCAGCACCGGCTCTGGAACTGCTCCGATCCCGT
GGAGCGGAGACCATCATCTGCCAGAGTGTGCCGCCCTCGAGGGATGAGAT
CCTGCAGAAGGTGCCCGGCGTGGATGCCATCTATTGGGCCCATTACCAGC
CCCTGAATGCCGGAATCCTGGATGCTGCTGGATCCCAGCTGCGTTGCGTG
AGCACCATGTCCTCCGGAATCGATTTTGTGGATATTCCGGAGTTCCAGAA
GAGGGGAATCCCATTGGGCCACACTCCCGGGGTGGTGAAAAATGCAGTGG
CCGATCTCGCCATTGGCTTGATGATTGCAGCCGGTCGTCACTTTCATGCC
GGTCGCACCGAAATCGAGAGGTCCCAATGGAAAATCGAGCAGATCAACTG
GATGATGGGTCAAGAGATTCGCGATTCCGTCATCGGTTTCTTTGGCTTTG
GCGGTATTAGTCAGGCCATCGCCAAGCGATTGCAGTGCTGGGATGTGGCC
AAGATCATCTACCATACTCGCACCCGAAAGGAAAACGATGGCGACTTCAA
GGCAGAGCATGTGTCGTTTGAACAACTTTTACAAGAAAGTGACTTCCTGG
TGGTAGCTGCTCCACTTACAAACGAAACTAGAGAGAAATTCAATGGAAAG
GCATTTAATCTGATGAAGAGGAGTTCTGTGTTTGTCAATGTGGCCAGAGG
AGGTCTGGTAAATCAAACTGACCTTCATGACGCCCTGACAAATGGTACAA
TTTCTGCCGCAGGCTTGGATGTGACCACACCAGAACCACTGCCCGCCAAT
AGTCCTCTTCTCAATGTGCCCAATTGTGTTATCCTTCCCCATATGGGCAC
TCAGACAATGAAGACTACCATTGAAATGGGATTGCTTGCTGCCAATAATA
TTTTGAACGCCATCGAAGGGAAGCCCATGATAAGGCCAGCCTACTGAAAG
CTTTCTAGACCAT
BS03676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-RA | 981 | CG31673-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
CG31673-RB | 978 | CG31673-PB | 1..978 | 17..997 | 4825 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-RA | 1126 | CG31673-RA | 58..1042 | 13..997 | 4910 | 99.9 | Plus |
CG31673-RB | 1221 | CG31673-RB | 58..1039 | 13..997 | 4830 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20829666..20830075 | 13..422 | 2035 | 99.8 | Plus |
2L | 23513712 | 2L | 20830279..20830614 | 419..754 | 1680 | 100 | Plus |
2L | 23513712 | 2L | 20830669..20830796 | 751..878 | 640 | 100 | Plus |
2L | 23513712 | 2L | 20830860..20830979 | 878..997 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:04:03 has no hits.
BS03676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:38 Download gff for
BS03676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 1..981 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:44 Download gff for
BS03676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 54..1043 | 8..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:47 Download gff for
BS03676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 62..1041 | 17..996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:38 Download gff for
BS03676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 54..1043 | 8..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:13 Download gff for
BS03676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 62..1041 | 17..996 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:13 Download gff for
BS03676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20829670..20830073 | 17..420 | 100 | -> | Plus |
2L | 20830281..20830612 | 421..752 | 100 | -> | Plus |
2L | 20830671..20830796 | 753..878 | 100 | -> | Plus |
2L | 20830861..20830978 | 879..996 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:47 Download gff for
BS03676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20829670..20830073 | 17..420 | 100 | -> | Plus |
arm_2L | 20830281..20830612 | 421..752 | 100 | -> | Plus |
arm_2L | 20830671..20830796 | 753..878 | 100 | -> | Plus |
arm_2L | 20830861..20830978 | 879..996 | 100 | | Plus |
BS03676.pep Sequence
Translation from 16 to 996
> BS03676.pep
MSRATRAFKVLISHPNVPAPALELLRSRGAETIICQSVPPSRDEILQKVP
GVDAIYWAHYQPLNAGILDAAGSQLRCVSTMSSGIDFVDIPEFQKRGIPL
GHTPGVVKNAVADLAIGLMIAAGRHFHAGRTEIERSQWKIEQINWMMGQE
IRDSVIGFFGFGGISQAIAKRLQCWDVAKIIYHTRTRKENDGDFKAEHVS
FEQLLQESDFLVVAAPLTNETREKFNGKAFNLMKRSSVFVNVARGGLVNQ
TDLHDALTNGTISAAGLDVTTPEPLPANSPLLNVPNCVILPHMGTQTMKT
TIEMGLLAANNILNAIEGKPMIRPAY*
BS03676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-PA | 326 | CG31673-PA | 1..326 | 1..326 | 1686 | 100 | Plus |
CG31673-PB | 325 | CG31673-PB | 1..325 | 1..326 | 1660 | 99.4 | Plus |
CG9331-PK | 326 | CG9331-PK | 3..326 | 4..326 | 912 | 52.9 | Plus |
CG9331-PJ | 326 | CG9331-PJ | 3..326 | 4..326 | 912 | 52.9 | Plus |
CG9331-PG | 326 | CG9331-PG | 3..326 | 4..326 | 912 | 52.9 | Plus |