Clone BS03676 Report

Search the DGRC for BS03676

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG31673-RA
Protein status:BS03676.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03676.3prime Sequence

933 bp (819 high quality bases) assembled on 2005-12-01

> BS03676.3prime
ATGGTCTAGAAAGCTTTCAGTAGGCTGGCCTTATCATGGGCTTCCCTTCG
ATGGCGTTCAAAATATTATTGGCAGCAAGCAATCCCATTTCAATGGTAGT
CTTCATTGTCTGAGTGCCCATATGGGGAAGGATAACACAATTGGGCACAT
TGAGAAGAGGACTATTGGCGGGCAGTGGTTCTGGTGTGGTCACATCCAAG
CCTGCGGCAGAAATTGTACCATTTGTCAGGGCGTCATGAAGGTCAGTTTG
ATTTACCAGACCTCCTCTGGCCACATTGACAAACACAGAACTCCTCTTCA
TCAGATTAAATGCCTTTCCATTGAATTTCTCTCTAGTTTCGTTTGTAAGT
GGAGCAGCTACCACCAGGAAGTCACTTTCTTGTAAAAGTTGTTCAAACGA
CACATGCTCTGCCTTGAAGTCGCCATCGTTTTCCTTTCGGGTGCGAGTAT
GGTAGATGATCTTGGCCACATCCCAGCACTGCAATCGCTTGGCGATGGCC
TGACTAATACCGCCAAAGCCAAAGAAACCGATGACGGAATCGCGAATCTC
TTGACCCATCATCCAGTTGATCTGCTCGATTTTCCATTGGGACCTCTCGA
TTTCGGTGCGACCGGCATGAAAGTGACGACCGGCTGCAATCATCAAGCCA
ATGGCGAGATCGGCCACTGCATTTTTCACCACCCCGGGAGTGTGGCCCAA
TGGGATTCCCCTCTTCTGGAACTCCGGAATATCCACAAAATCGATTCCGG
AGGACATGGTGCTCACGCAACGCAGCTGGGATCCAGCAGCATCCAGGATT
CCGGCATTCAGGGGCTGGTAATGGGCCCAATAGATGGCATCCACGCCGGG
CACCTTCTGCAGGATCTCATCCCTCGAGGGCGGCACACTCTGGCAGATGA
TGGTCTCCGCTCCACGGGATCGGAGCAGTTCCA

BS03676.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-PA 981 CG31673-RA 65..981 933..17 4585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-RA 1126 CG31673-RA 126..1042 933..17 4585 100 Minus
CG31673-RB 1221 CG31673-RB 126..1039 933..17 4530 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20829734..20830075 933..592 1710 100 Minus
2L 23513712 2L 20830279..20830614 595..260 1680 100 Minus
2L 23513712 2L 20830669..20830796 263..136 640 100 Minus
2L 23513712 2L 20830860..20830979 136..17 600 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:55:22 has no hits.

BS03676.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:57 Download gff for BS03676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-PA 66..981 17..932 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:44 Download gff for BS03676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-PA 66..981 17..932 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:19 Download gff for BS03676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 127..1042 17..932 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:15 Download gff for BS03676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 127..1042 17..932 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:15 Download gff for BS03676.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20829735..20830073 594..932 100 -> Minus
2L 20830281..20830612 262..593 100 -> Minus
2L 20830671..20830796 136..261 100 -> Minus
2L 20830861..20830979 17..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:19 Download gff for BS03676.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20829735..20830073 594..932 100 -> Minus
arm_2L 20830281..20830612 262..593 100 -> Minus
arm_2L 20830671..20830796 136..261 100 -> Minus
arm_2L 20830861..20830979 17..135 100   Minus

BS03676.5prime Sequence

913 bp (807 high quality bases) assembled on 2005-12-01

> BS03676.5prime
GAAGTTATCAGTCGACATGTCTCGTGCGACCAGGGCTTTTAAAGTGCTGA
TTTCGCATCCAAATGTCCCAGCACCGGCTCTGGAACTGCTCCGATCCCGT
GGAGCGGAGACCATCATCTGCCAGAGTGTGCCGCCCTCGAGGGATGAGAT
CCTGCAGAAGGTGCCCGGCGTGGATGCCATCTATTGGGCCCATTACCAGC
CCCTGAATGCCGGAATCCTGGATGCTGCTGGATCCCAGCTGCGTTGCGTG
AGCACCATGTCCTCCGGAATCGATTTTGTGGATATTCCGGAGTTCCAGAA
GAGGGGAATCCCATTGGGCCACACTCCCGGGGTGGTGAAAAATGCAGTGG
CCGATCTCGCCATTGGCTTGATGATTGCAGCCGGTCGTCACTTTCATGCC
GGTCGCACCGAAATCGAGAGGTCCCAATGGAAAATCGAGCAGATCAACTG
GATGATGGGTCAAGAGATTCGCGATTCCGTCATCGGTTTCTTTGGCTTTG
GCGGTATTAGTCAGGCCATCGCCAAGCGATTGCAGTGCTGGGATGTGGCC
AAGATCATCTACCATACTCGCACCCGAAAGGAAAACGATGGCGACTTCAA
GGCAGAGCATGTGTCGTTTGAACAACTTTTACAAGAAAGTGACTTCCTGG
TGGTAGCTGCTCCACTTACAAACGAAACTAGAGAGAAATTCAATGGAAAG
GCATTTAATCTGATGAAGAGGAGTTCTGTGTTTGTCAATGTGGCCAGAGG
AGGTCTGGTAAATCAAACTGACCTTCATGACGCCCTGACAAATGGTACAA
TTTCTGCCGCAGGCTTGGATGTGACCACACCAGAACCACTGCCCGCCAAT
AGTCCTCTTCTCGATGTGCCCAATTGTGTTATCCTTCCCCATATGGGCAC
TCAGACAATGAAA

BS03676.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-PA 981 CG31673-RA 1..896 17..912 4455 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-RA 1126 CG31673-RA 58..957 13..912 4470 99.8 Plus
CG31673-RB 1221 CG31673-RB 58..954 13..912 4415 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20829666..20830075 13..422 2035 99.8 Plus
2L 23513712 2L 20830279..20830614 419..754 1680 100 Plus
2L 23513712 2L 20830669..20830796 751..878 625 99.2 Plus
Blast to na_te.dros performed on 2015-02-10 20:40:57 has no hits.

BS03676.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:57 Download gff for BS03676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:45 Download gff for BS03676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:49:49 Download gff for BS03676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 53..955 8..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:13 Download gff for BS03676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 53..955 8..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:13 Download gff for BS03676.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20830281..20830612 421..752 100 -> Plus
2L 20830671..20830796 753..878 99 -> Plus
2L 20830861..20830892 879..910 100   Plus
2L 20829661..20830073 8..420 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:49:49 Download gff for BS03676.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20829661..20830073 8..420 99 -> Plus
arm_2L 20830281..20830612 421..752 100 -> Plus
arm_2L 20830671..20830796 753..878 99 -> Plus
arm_2L 20830861..20830892 879..910 100   Plus

BS03676.complete Sequence

1013 bp (1013 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634751

> BS03676.complete
GAAGTTATCAGTCGACATGTCTCGTGCGACCAGGGCTTTTAAAGTGCTGA
TTTCGCATCCAAATGTCCCAGCACCGGCTCTGGAACTGCTCCGATCCCGT
GGAGCGGAGACCATCATCTGCCAGAGTGTGCCGCCCTCGAGGGATGAGAT
CCTGCAGAAGGTGCCCGGCGTGGATGCCATCTATTGGGCCCATTACCAGC
CCCTGAATGCCGGAATCCTGGATGCTGCTGGATCCCAGCTGCGTTGCGTG
AGCACCATGTCCTCCGGAATCGATTTTGTGGATATTCCGGAGTTCCAGAA
GAGGGGAATCCCATTGGGCCACACTCCCGGGGTGGTGAAAAATGCAGTGG
CCGATCTCGCCATTGGCTTGATGATTGCAGCCGGTCGTCACTTTCATGCC
GGTCGCACCGAAATCGAGAGGTCCCAATGGAAAATCGAGCAGATCAACTG
GATGATGGGTCAAGAGATTCGCGATTCCGTCATCGGTTTCTTTGGCTTTG
GCGGTATTAGTCAGGCCATCGCCAAGCGATTGCAGTGCTGGGATGTGGCC
AAGATCATCTACCATACTCGCACCCGAAAGGAAAACGATGGCGACTTCAA
GGCAGAGCATGTGTCGTTTGAACAACTTTTACAAGAAAGTGACTTCCTGG
TGGTAGCTGCTCCACTTACAAACGAAACTAGAGAGAAATTCAATGGAAAG
GCATTTAATCTGATGAAGAGGAGTTCTGTGTTTGTCAATGTGGCCAGAGG
AGGTCTGGTAAATCAAACTGACCTTCATGACGCCCTGACAAATGGTACAA
TTTCTGCCGCAGGCTTGGATGTGACCACACCAGAACCACTGCCCGCCAAT
AGTCCTCTTCTCAATGTGCCCAATTGTGTTATCCTTCCCCATATGGGCAC
TCAGACAATGAAGACTACCATTGAAATGGGATTGCTTGCTGCCAATAATA
TTTTGAACGCCATCGAAGGGAAGCCCATGATAAGGCCAGCCTACTGAAAG
CTTTCTAGACCAT

BS03676.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-RA 981 CG31673-PA 1..981 17..997 4905 100 Plus
CG31673-RB 978 CG31673-PB 1..978 17..997 4825 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-RA 1126 CG31673-RA 58..1042 13..997 4910 99.9 Plus
CG31673-RB 1221 CG31673-RB 58..1039 13..997 4830 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20829666..20830075 13..422 2035 99.8 Plus
2L 23513712 2L 20830279..20830614 419..754 1680 100 Plus
2L 23513712 2L 20830669..20830796 751..878 640 100 Plus
2L 23513712 2L 20830860..20830979 878..997 600 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:04:03 has no hits.

BS03676.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:38 Download gff for BS03676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 1..981 17..997 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:44 Download gff for BS03676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 54..1043 8..997 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:47 Download gff for BS03676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 62..1041 17..996 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:38 Download gff for BS03676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 54..1043 8..997 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:13 Download gff for BS03676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 62..1041 17..996 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:13 Download gff for BS03676.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20829670..20830073 17..420 100 -> Plus
2L 20830281..20830612 421..752 100 -> Plus
2L 20830671..20830796 753..878 100 -> Plus
2L 20830861..20830978 879..996 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:47 Download gff for BS03676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20829670..20830073 17..420 100 -> Plus
arm_2L 20830281..20830612 421..752 100 -> Plus
arm_2L 20830671..20830796 753..878 100 -> Plus
arm_2L 20830861..20830978 879..996 100   Plus

BS03676.pep Sequence

Translation from 16 to 996

> BS03676.pep
MSRATRAFKVLISHPNVPAPALELLRSRGAETIICQSVPPSRDEILQKVP
GVDAIYWAHYQPLNAGILDAAGSQLRCVSTMSSGIDFVDIPEFQKRGIPL
GHTPGVVKNAVADLAIGLMIAAGRHFHAGRTEIERSQWKIEQINWMMGQE
IRDSVIGFFGFGGISQAIAKRLQCWDVAKIIYHTRTRKENDGDFKAEHVS
FEQLLQESDFLVVAAPLTNETREKFNGKAFNLMKRSSVFVNVARGGLVNQ
TDLHDALTNGTISAAGLDVTTPEPLPANSPLLNVPNCVILPHMGTQTMKT
TIEMGLLAANNILNAIEGKPMIRPAY*

BS03676.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-PA 326 CG31673-PA 1..326 1..326 1686 100 Plus
CG31673-PB 325 CG31673-PB 1..325 1..326 1660 99.4 Plus
CG9331-PK 326 CG9331-PK 3..326 4..326 912 52.9 Plus
CG9331-PJ 326 CG9331-PJ 3..326 4..326 912 52.9 Plus
CG9331-PG 326 CG9331-PG 3..326 4..326 912 52.9 Plus