Clone BS03678 Report

Search the DGRC for BS03678

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptPaip2-RA
Protein status:BS03678.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03678.3prime Sequence

405 bp (404 high quality bases) assembled on 2005-12-01

> BS03678.3prime
ATGGTCTAGAAAGCTTTTATGAGGCAGGGAAATCTATAACATGACAACGC
GGAACAAACTCATCAGCCATCGGATTCAGAACAGACTTTTCAACATCACA
CTGGCTCTTGGGTAGTGCGGAAAGTGCCGTGTTCTGCTCGTCCGTCTTGG
CCTTCTCCCATTCGTTGATCTGCTCCTCCAGCTCGTCTTCTATCATGGCT
TCAAAACACTCCTGCATAATCTCTTCCTCCTCCAGCCGTTGCAGTTCGTT
CTTGTCGAACTCCTCCTCGTTCTCCATCCACATGTATTCGGAAAAATCTG
GCTCATCGTCGATGTCTGACAGCGACTCGTCGTCGTCCACTACGTAAATT
ATTTGATCCGTCCAGTCCACAGATGGCACTTTTAACAACATGTCGACTGA
TAACT

BS03678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12358-PA 375 Paip2-RA 1..375 391..17 1875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Paip2-RB 1045 CG12358-RB 334..709 391..16 1880 100 Minus
Paip2-RA 1970 CG12358-RA 348..723 391..16 1880 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12983740..12983884 391..247 725 100 Minus
3R 32079331 3R 12984111..12984241 146..16 655 100 Minus
3R 32079331 3R 12983947..12984048 247..146 510 100 Minus
Blast to na_te.dros performed on 2015-02-03 13:48:40 has no hits.

BS03678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:00 Download gff for BS03678.3prime
Subject Subject Range Query Range Percent Splice Strand
Paip2-PA 1..375 17..391 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:50 Download gff for BS03678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12358-PA 1..375 17..391 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:05 Download gff for BS03678.3prime
Subject Subject Range Query Range Percent Splice Strand
Paip2-RA 348..725 13..391 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:29 Download gff for BS03678.3prime
Subject Subject Range Query Range Percent Splice Strand
Paip2-RA 348..725 13..391 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:29 Download gff for BS03678.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12983735..12983883 248..397 97 -> Minus
3R 12983947..12984047 147..247 100 -> Minus
3R 12984111..12984243 13..146 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:05 Download gff for BS03678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8809457..8809605 248..397 97 -> Minus
arm_3R 8809669..8809769 147..247 100 -> Minus
arm_3R 8809833..8809965 13..146 99   Minus

BS03678.5prime Sequence

405 bp (404 high quality bases) assembled on 2005-12-01

> BS03678.5prime
GAAGTTATCAGTCGACATGTTGTTAAAAGTGCCATCTGTGGACTGGACGG
ATCAAATAATTTACGTAGTGGACGACGACGAGTCGCTGTCAGACATCGAC
GATGAGCCAGATTTTTCCGAATACATGTGGATGGAGAACGAGGAGGAGTT
CGACAAGAACGAACTGCAACGGCTGGAGGAGGAAGAGATTATGCAGGAGT
GTTTTGAAGCCATGATAGAAGACGAGCTGGAGGAGCAGATCAACGAATGG
GAGAAGGCCAAGACGGACGAGCAGAACACGGCACTTTCCGCACTACCCAA
GAGCCAGTGTGATGTTGAAAAGTCTGTTCTGAATCCGATGGCTGATGAGT
TTGTTCCGCGTTGTCATGTTATAGATTTCCCTGCCTCATAAAAGCTTTCT
AGACC

BS03678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12358-PA 375 Paip2-RA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Paip2-RB 1045 CG12358-RB 334..709 17..392 1880 100 Plus
Paip2-RA 1970 CG12358-RA 348..723 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12983740..12983884 17..161 725 100 Plus
3R 32079331 3R 12984111..12984241 262..392 655 100 Plus
3R 32079331 3R 12983947..12984048 161..262 510 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:08:54 has no hits.

BS03678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:01 Download gff for BS03678.5prime
Subject Subject Range Query Range Percent Splice Strand
Paip2-PA 1..375 17..391 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:51 Download gff for BS03678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12358-PA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:34 Download gff for BS03678.5prime
Subject Subject Range Query Range Percent Splice Strand
Paip2-RA 348..725 17..395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:26:14 Download gff for BS03678.5prime
Subject Subject Range Query Range Percent Splice Strand
Paip2-RA 348..725 17..395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:26:14 Download gff for BS03678.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12983735..12983883 11..160 97 -> Plus
3R 12983947..12984047 161..261 100 -> Plus
3R 12984111..12984243 262..395 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:34 Download gff for BS03678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8809457..8809605 11..160 97 -> Plus
arm_3R 8809669..8809769 161..261 100 -> Plus
arm_3R 8809833..8809965 262..395 99   Plus

BS03678.complete Sequence

407 bp (407 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634752

> BS03678.complete
GAAGTTATCAGTCGACATGTTGTTAAAAGTGCCATCTGTGGACTGGACGG
ATCAAATAATTTACGTAGTGGACGACGACGAGTCGCTGTCAGACATCGAC
GATGAGCCAGATTTTTCCGAATACATGTGGATGGAGAACGAGGAGGAGTT
CGACAAGAACGAACTGCAACGGCTGGAGGAGGAAGAGATTATGCAGGAGT
GTTTTGAAGCCATGATAGAAGACGAGCTGGAGGAGCAGATCAACGAATGG
GAGAAGGCCAAGACGGACGAGCAGAACACGGCACTTTCCGCACTACCCAA
GAGCCAGTGTGATGTTGAAAAGTCTGTTCTGAATCCGATGGCTGATGAGT
TTGTTCCGCGTTGTCATGTTATAGATTTCCCTGCCTCATAAAAGCTTTCT
AGACCAT

BS03678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Paip2-RB 375 CG12358-PB 1..375 17..391 1875 100 Plus
Paip2-RA 375 CG12358-PA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Paip2-RB 1045 CG12358-RB 334..709 17..392 1880 100 Plus
Paip2-RA 1970 CG12358-RA 348..723 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12983740..12983884 17..161 725 100 Plus
3R 32079331 3R 12984111..12984241 262..392 655 100 Plus
3R 32079331 3R 12983947..12984048 161..262 510 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:11:27 has no hits.

BS03678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:40 Download gff for BS03678.complete
Subject Subject Range Query Range Percent Splice Strand
Paip2-RA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:47 Download gff for BS03678.complete
Subject Subject Range Query Range Percent Splice Strand
Paip2-RA 348..725 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:11 Download gff for BS03678.complete
Subject Subject Range Query Range Percent Splice Strand
Paip2-RA 353..720 22..389 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:40 Download gff for BS03678.complete
Subject Subject Range Query Range Percent Splice Strand
Paip2-RA 348..725 17..395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:18 Download gff for BS03678.complete
Subject Subject Range Query Range Percent Splice Strand
Paip2-RA 353..720 22..389 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:18 Download gff for BS03678.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12983745..12983883 22..160 100 -> Plus
3R 12983947..12984047 161..261 100 -> Plus
3R 12984111..12984238 262..389 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:11 Download gff for BS03678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8809467..8809605 22..160 100 -> Plus
arm_3R 8809669..8809769 161..261 100 -> Plus
arm_3R 8809833..8809960 262..389 100   Plus

BS03678.pep Sequence

Translation from 16 to 390

> BS03678.pep
MLLKVPSVDWTDQIIYVVDDDESLSDIDDEPDFSEYMWMENEEEFDKNEL
QRLEEEEIMQECFEAMIEDELEEQINEWEKAKTDEQNTALSALPKSQCDV
EKSVLNPMADEFVPRCHVIDFPAS*

BS03678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Paip2-PB 124 CG12358-PB 1..124 1..124 656 100 Plus
Paip2-PA 124 CG12358-PA 1..124 1..124 656 100 Plus