Clone Sequence Records
BS03680.3prime Sequence
714 bp (713 high quality bases) assembled on 2005-12-01
> BS03680.3prime
ATGGTCTAGAAAGCTTTTACGCAGGTTGCTTCTGCACCTTCGCCAATTCT
GCCTTGAACTTCGAAATGGTCTCACGTGCCAGCTTTAGTTTGTCCTTAAG
TGTAACAATCTCCCCCTTGACCTTCTGTTTTACATTCACAATGTTGTCCA
ACGTTTTCGTCTTCTTTTCCTCAAAGTCAGTGTCATGGGTTAGCAACCCA
TTGGCGCTCTGTTCTGAAAGCAGGAGATAATGCTGCAAGATCTGGGTGGG
CTCCTGGAACACTATTTCCTCATACGACTCCGAGACCAGGCCCTTCTTAG
TGTCCATAGTGGTGCTAGAGGAGAGCTCGCCATCGACCACAGGCGATTGG
AAGAGCTTAAGGATGTGGTAGCAGGTAACCGGGCGCTCTGATTGATCGTT
GAAGTATATCTTGATGATCACCTCGAATTCACCCCATCCGGTCTCGGTAA
TCTCGTAGGGCGGCTTAACTACGATCCTGTTCGGATTAGCGTAGCTCTCG
TGCAGCTTGAAATGCACCTTTTTCACGTAAATGGACATGTCCTCGTTGAA
ATAGGGCTTCAAATAGACTTTCCACTGATGCGTGTGTCCGTCCTCCTCGC
GCTTCTTGCCGAAGGATCTGGCAATGTTTCCATACACTATGGGCTTTACT
ATAGTTACGCCCTTTAGTCGGCCACCCGAGTCTCCGCCAAAGTCAGTCAT
GTCGACTGATAACT
BS03680.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9207-PA | 684 | Gas41-RA | 1..684 | 700..17 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gas41-RA | 840 | CG9207-RA | 92..777 | 700..15 | 3430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6949591..6950116 | 175..700 | 2630 | 100 | Plus |
2L | 23513712 | 2L | 6949373..6949532 | 15..174 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:47:25 has no hits.
BS03680.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:04 Download gff for
BS03680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gas41-PA | 1..684 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:54 Download gff for
BS03680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9207-PA | 1..684 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:08:32 Download gff for
BS03680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gas41-RA | 84..777 | 15..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:26 Download gff for
BS03680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gas41-RA | 84..777 | 15..706 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:26 Download gff for
BS03680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6949373..6949532 | 15..174 | 100 | <- | Plus |
2L | 6949591..6950114 | 175..698 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:08:32 Download gff for
BS03680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6949373..6949532 | 15..174 | 100 | <- | Plus |
arm_2L | 6949591..6950114 | 175..698 | 100 | <- | Plus |
BS03680.5prime Sequence
714 bp (713 high quality bases) assembled on 2005-11-29
> BS03680.5prime
GAAGTTATCAGTCGACATGACTGACTTTGGCGGAGACTCGGGTGGCCGAC
TAAAGGGCGTAACTATAGTAAAGCCCATAGTGTATGGAAACATTGCCAGA
TCCTTCGGCAAGAAGCGCGAGGAGGACGGACACACGCATCAGTGGAAAGT
CTATTTGAAGCCCTATTTCAACGAGGACATGTCCATTTACGTGAAAAAGG
TGCATTTCAAGCTGCACGAGAGCTACGCTAATCCGAACAGGATCGTAGTT
AAGCCGCCCTACGAGATTACCGAGACCGGATGGGGTGAATTCGAGGTGAT
CATCAAGATATACTTCAACGATCAATCAGAGCGCCCGGTTACCTGCTACC
ACATCCTTAAGCTCTTCCAATCGCCTGTGGTCGATGGCGAGCTCTCCTCT
AGCACCACTATGGACACTAAGAAGGGCCTGGTCTCGGAGTCGTATGAGGA
AATAGTGTTCCAGGAGCCCACCCAGATCTTGCAGCATTATCTCCTGCTTT
CAGAACAGAGCGCCAATGGGTTGCTAACCCATGACACTGACTTTGAGGAA
AAGAAGACGAAAACGTTGGACAACATTGTGAATGTAAAACAGAAGGTCAA
GGGGGAGATTGTTACACTTAAGGACAAACTAAAGCTGGCACGTGAGACCA
TTTCGAAGTTCAAGGCAGAATTGGCGAAGGTGCAGAAGCAACCTGCGTAA
AAGCTTTCTAGACC
BS03680.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9207-PA | 684 | Gas41-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gas41-RA | 840 | CG9207-RA | 92..777 | 17..702 | 3430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6949591..6950116 | 542..17 | 2630 | 100 | Minus |
2L | 23513712 | 2L | 6949373..6949532 | 702..543 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:53:20 has no hits.
BS03680.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:05 Download gff for
BS03680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gas41-PA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:55 Download gff for
BS03680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9207-PA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:15 Download gff for
BS03680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gas41-RA | 84..777 | 11..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:32:59 Download gff for
BS03680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gas41-RA | 84..777 | 11..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:32:59 Download gff for
BS03680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6949373..6949532 | 543..702 | 100 | <- | Minus |
2L | 6949591..6950114 | 19..542 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:15 Download gff for
BS03680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6949373..6949532 | 543..702 | 100 | <- | Minus |
arm_2L | 6949591..6950114 | 19..542 | 100 | <- | Minus |
BS03680.complete Sequence
716 bp (716 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ638772
> BS03680.complete
GAAGTTATCAGTCGACATGACTGACTTTGGCGGAGACTCGGGTGGCCGAC
TAAAGGGCGTAACTATAGTAAAGCCCATAGTGTATGGAAACATTGCCAGA
TCCTTCGGCAAGAAGCGCGAGGAGGACGGACACACGCATCAGTGGAAAGT
CTATTTGAAGCCCTATTTCAACGAGGACATGTCCATTTACGTGAAAAAGG
TGCATTTCAAGCTGCACGAGAGCTACGCTAATCCGAACAGGATCGTAGTT
AAGCCGCCCTACGAGATTACCGAGACCGGATGGGGTGAATTCGAGGTGAT
CATCAAGATATACTTCAACGATCAATCAGAGCGCCCGGTTACCTGCTACC
ACATCCTTAAGCTCTTCCAATCGCCTGTGGTCGATGGCGAGCTCTCCTCT
AGCACCACTATGGACACTAAGAAGGGCCTGGTCTCGGAGTCGTATGAGGA
AATAGTGTTCCAGGAGCCCACCCAGATCTTGCAGCATTATCTCCTGCTTT
CAGAACAGAGCGCCAATGGGTTGCTAACCCATGACACTGACTTTGAGGAA
AAGAAGACGAAAACGTTGGACAACATTGTGAATGTAAAACAGAAGGTCAA
GGGGGAGATTGTTACACTTAAGGACAAACTAAAGCTGGCACGTGAGACCA
TTTCGAAGTTCAAGGCAGAATTGGCGAAGGTGCAGAAGCAACCTGCGTAA
AAGCTTTCTAGACCAT
BS03680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gas41-RA | 684 | CG9207-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gas41-RA | 840 | CG9207-RA | 92..777 | 17..702 | 3430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6949591..6950116 | 542..17 | 2630 | 100 | Minus |
2L | 23513712 | 2L | 6949373..6949532 | 702..543 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:44:44 has no hits.
BS03680.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:41 Download gff for
BS03680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gas41-RA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:49 Download gff for
BS03680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gas41-RA | 12..705 | 11..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:46 Download gff for
BS03680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gas41-RA | 92..773 | 17..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:42 Download gff for
BS03680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gas41-RA | 12..705 | 11..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:12 Download gff for
BS03680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gas41-RA | 92..773 | 17..698 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:12 Download gff for
BS03680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6949377..6949532 | 543..698 | 100 | <- | Minus |
2L | 6949591..6950116 | 17..542 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:46 Download gff for
BS03680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6949377..6949532 | 543..698 | 100 | <- | Minus |
arm_2L | 6949591..6950116 | 17..542 | 100 | | Minus |
BS03680.pep Sequence
Translation from 16 to 699
> BS03680.pep
MTDFGGDSGGRLKGVTIVKPIVYGNIARSFGKKREEDGHTHQWKVYLKPY
FNEDMSIYVKKVHFKLHESYANPNRIVVKPPYEITETGWGEFEVIIKIYF
NDQSERPVTCYHILKLFQSPVVDGELSSSTTMDTKKGLVSESYEEIVFQE
PTQILQHYLLLSEQSANGLLTHDTDFEEKKTKTLDNIVNVKQKVKGEIVT
LKDKLKLARETISKFKAELAKVQKQPA*
BS03680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gas41-PA | 227 | CG9207-PA | 1..227 | 1..227 | 1180 | 100 | Plus |
ear-PC | 931 | CG4913-PC | 27..106 | 40..119 | 165 | 38.8 | Plus |
ear-PA | 931 | CG4913-PA | 27..106 | 40..119 | 165 | 38.8 | Plus |
ear-PB | 945 | CG4913-PB | 27..106 | 40..119 | 165 | 38.8 | Plus |