Clone BS03680 Report

Search the DGRC for BS03680

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptGas41-RA
Protein status:BS03680.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03680.3prime Sequence

714 bp (713 high quality bases) assembled on 2005-12-01

> BS03680.3prime
ATGGTCTAGAAAGCTTTTACGCAGGTTGCTTCTGCACCTTCGCCAATTCT
GCCTTGAACTTCGAAATGGTCTCACGTGCCAGCTTTAGTTTGTCCTTAAG
TGTAACAATCTCCCCCTTGACCTTCTGTTTTACATTCACAATGTTGTCCA
ACGTTTTCGTCTTCTTTTCCTCAAAGTCAGTGTCATGGGTTAGCAACCCA
TTGGCGCTCTGTTCTGAAAGCAGGAGATAATGCTGCAAGATCTGGGTGGG
CTCCTGGAACACTATTTCCTCATACGACTCCGAGACCAGGCCCTTCTTAG
TGTCCATAGTGGTGCTAGAGGAGAGCTCGCCATCGACCACAGGCGATTGG
AAGAGCTTAAGGATGTGGTAGCAGGTAACCGGGCGCTCTGATTGATCGTT
GAAGTATATCTTGATGATCACCTCGAATTCACCCCATCCGGTCTCGGTAA
TCTCGTAGGGCGGCTTAACTACGATCCTGTTCGGATTAGCGTAGCTCTCG
TGCAGCTTGAAATGCACCTTTTTCACGTAAATGGACATGTCCTCGTTGAA
ATAGGGCTTCAAATAGACTTTCCACTGATGCGTGTGTCCGTCCTCCTCGC
GCTTCTTGCCGAAGGATCTGGCAATGTTTCCATACACTATGGGCTTTACT
ATAGTTACGCCCTTTAGTCGGCCACCCGAGTCTCCGCCAAAGTCAGTCAT
GTCGACTGATAACT

BS03680.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9207-PA 684 Gas41-RA 1..684 700..17 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Gas41-RA 840 CG9207-RA 92..777 700..15 3430 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6949591..6950116 175..700 2630 100 Plus
2L 23513712 2L 6949373..6949532 15..174 800 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:47:25 has no hits.

BS03680.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:04 Download gff for BS03680.3prime
Subject Subject Range Query Range Percent Splice Strand
Gas41-PA 1..684 17..700 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:54 Download gff for BS03680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9207-PA 1..684 17..700 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:08:32 Download gff for BS03680.3prime
Subject Subject Range Query Range Percent Splice Strand
Gas41-RA 84..777 15..706 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:26 Download gff for BS03680.3prime
Subject Subject Range Query Range Percent Splice Strand
Gas41-RA 84..777 15..706 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:26 Download gff for BS03680.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6949373..6949532 15..174 100 <- Plus
2L 6949591..6950114 175..698 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:08:32 Download gff for BS03680.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6949373..6949532 15..174 100 <- Plus
arm_2L 6949591..6950114 175..698 100 <- Plus

BS03680.5prime Sequence

714 bp (713 high quality bases) assembled on 2005-11-29

> BS03680.5prime
GAAGTTATCAGTCGACATGACTGACTTTGGCGGAGACTCGGGTGGCCGAC
TAAAGGGCGTAACTATAGTAAAGCCCATAGTGTATGGAAACATTGCCAGA
TCCTTCGGCAAGAAGCGCGAGGAGGACGGACACACGCATCAGTGGAAAGT
CTATTTGAAGCCCTATTTCAACGAGGACATGTCCATTTACGTGAAAAAGG
TGCATTTCAAGCTGCACGAGAGCTACGCTAATCCGAACAGGATCGTAGTT
AAGCCGCCCTACGAGATTACCGAGACCGGATGGGGTGAATTCGAGGTGAT
CATCAAGATATACTTCAACGATCAATCAGAGCGCCCGGTTACCTGCTACC
ACATCCTTAAGCTCTTCCAATCGCCTGTGGTCGATGGCGAGCTCTCCTCT
AGCACCACTATGGACACTAAGAAGGGCCTGGTCTCGGAGTCGTATGAGGA
AATAGTGTTCCAGGAGCCCACCCAGATCTTGCAGCATTATCTCCTGCTTT
CAGAACAGAGCGCCAATGGGTTGCTAACCCATGACACTGACTTTGAGGAA
AAGAAGACGAAAACGTTGGACAACATTGTGAATGTAAAACAGAAGGTCAA
GGGGGAGATTGTTACACTTAAGGACAAACTAAAGCTGGCACGTGAGACCA
TTTCGAAGTTCAAGGCAGAATTGGCGAAGGTGCAGAAGCAACCTGCGTAA
AAGCTTTCTAGACC

BS03680.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9207-PA 684 Gas41-RA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Gas41-RA 840 CG9207-RA 92..777 17..702 3430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6949591..6950116 542..17 2630 100 Minus
2L 23513712 2L 6949373..6949532 702..543 800 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:53:20 has no hits.

BS03680.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:05 Download gff for BS03680.5prime
Subject Subject Range Query Range Percent Splice Strand
Gas41-PA 1..684 17..700 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:55 Download gff for BS03680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9207-PA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:15 Download gff for BS03680.5prime
Subject Subject Range Query Range Percent Splice Strand
Gas41-RA 84..777 11..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:32:59 Download gff for BS03680.5prime
Subject Subject Range Query Range Percent Splice Strand
Gas41-RA 84..777 11..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:32:59 Download gff for BS03680.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6949373..6949532 543..702 100 <- Minus
2L 6949591..6950114 19..542 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:15 Download gff for BS03680.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6949373..6949532 543..702 100 <- Minus
arm_2L 6949591..6950114 19..542 100 <- Minus

BS03680.complete Sequence

716 bp (716 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ638772

> BS03680.complete
GAAGTTATCAGTCGACATGACTGACTTTGGCGGAGACTCGGGTGGCCGAC
TAAAGGGCGTAACTATAGTAAAGCCCATAGTGTATGGAAACATTGCCAGA
TCCTTCGGCAAGAAGCGCGAGGAGGACGGACACACGCATCAGTGGAAAGT
CTATTTGAAGCCCTATTTCAACGAGGACATGTCCATTTACGTGAAAAAGG
TGCATTTCAAGCTGCACGAGAGCTACGCTAATCCGAACAGGATCGTAGTT
AAGCCGCCCTACGAGATTACCGAGACCGGATGGGGTGAATTCGAGGTGAT
CATCAAGATATACTTCAACGATCAATCAGAGCGCCCGGTTACCTGCTACC
ACATCCTTAAGCTCTTCCAATCGCCTGTGGTCGATGGCGAGCTCTCCTCT
AGCACCACTATGGACACTAAGAAGGGCCTGGTCTCGGAGTCGTATGAGGA
AATAGTGTTCCAGGAGCCCACCCAGATCTTGCAGCATTATCTCCTGCTTT
CAGAACAGAGCGCCAATGGGTTGCTAACCCATGACACTGACTTTGAGGAA
AAGAAGACGAAAACGTTGGACAACATTGTGAATGTAAAACAGAAGGTCAA
GGGGGAGATTGTTACACTTAAGGACAAACTAAAGCTGGCACGTGAGACCA
TTTCGAAGTTCAAGGCAGAATTGGCGAAGGTGCAGAAGCAACCTGCGTAA
AAGCTTTCTAGACCAT

BS03680.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
Gas41-RA 684 CG9207-PA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Gas41-RA 840 CG9207-RA 92..777 17..702 3430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6949591..6950116 542..17 2630 100 Minus
2L 23513712 2L 6949373..6949532 702..543 800 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:44:44 has no hits.

BS03680.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:41 Download gff for BS03680.complete
Subject Subject Range Query Range Percent Splice Strand
Gas41-RA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:49 Download gff for BS03680.complete
Subject Subject Range Query Range Percent Splice Strand
Gas41-RA 12..705 11..702 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:46 Download gff for BS03680.complete
Subject Subject Range Query Range Percent Splice Strand
Gas41-RA 92..773 17..698 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:42 Download gff for BS03680.complete
Subject Subject Range Query Range Percent Splice Strand
Gas41-RA 12..705 11..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:12 Download gff for BS03680.complete
Subject Subject Range Query Range Percent Splice Strand
Gas41-RA 92..773 17..698 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:12 Download gff for BS03680.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6949377..6949532 543..698 100 <- Minus
2L 6949591..6950116 17..542 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:46 Download gff for BS03680.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6949377..6949532 543..698 100 <- Minus
arm_2L 6949591..6950116 17..542 100   Minus

BS03680.pep Sequence

Translation from 16 to 699

> BS03680.pep
MTDFGGDSGGRLKGVTIVKPIVYGNIARSFGKKREEDGHTHQWKVYLKPY
FNEDMSIYVKKVHFKLHESYANPNRIVVKPPYEITETGWGEFEVIIKIYF
NDQSERPVTCYHILKLFQSPVVDGELSSSTTMDTKKGLVSESYEEIVFQE
PTQILQHYLLLSEQSANGLLTHDTDFEEKKTKTLDNIVNVKQKVKGEIVT
LKDKLKLARETISKFKAELAKVQKQPA*

BS03680.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Gas41-PA 227 CG9207-PA 1..227 1..227 1180 100 Plus
ear-PC 931 CG4913-PC 27..106 40..119 165 38.8 Plus
ear-PA 931 CG4913-PA 27..106 40..119 165 38.8 Plus
ear-PB 945 CG4913-PB 27..106 40..119 165 38.8 Plus