Clone Sequence Records
BS03681.3prime Sequence
489 bp (488 high quality bases) assembled on 2005-12-01
> BS03681.3prime
ATGGTCTAGAAAGCTTTTACTTCTTCTTGTTGTTCTTGGCATTTTTACCA
TCGGCGGCGTTCTCGATCTTGGCGCGCTTCTTTGGGTGCTCGTCCTCCTC
GTCCTCGGCGACATCATCCTCCTCGTCATCCTCCTCCATGTCGACCACCT
CCACATCGTCCTTGATGTTGTGCCCGTGGATGTAGACGGGTCCGCTGCCC
TTGATCAGCTTGAATGTCACCTTCGACTCGTAGAACTCCACGTCGGGATT
GACGGCGCGGGTCTCTCCGGCCTTCAATACGGCGATGGGAATTTGCACGG
AGTCCTTGGGTGTGTTCACCTCGACCACGTTGAACTCGTTCTCCTTGGCC
TCGGCGCCCAAGAGGATCTGTTTGATGACCAGCTTCTGGCCGCGTGCGTA
GTCCTCGTCCACATCCCACGTGACGCTGTCGCTCTCGGCGGTCAAAGTGA
CTCCGTAGAATGATTCCTCAGCCATGTCGACTGATAACT
BS03681.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7917-PA | 459 | Nlp-RA | 1..459 | 475..17 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nlp-RB | 914 | CG7917-RB | 83..543 | 476..16 | 2305 | 100 | Minus |
Nlp-RA | 1080 | CG7917-RA | 249..709 | 476..16 | 2305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30009676..30009981 | 321..16 | 1530 | 100 | Minus |
3R | 32079331 | 3R | 30005287..30005425 | 454..316 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:12:20 has no hits.
BS03681.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:06 Download gff for
BS03681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-PA | 1..459 | 17..475 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:57 Download gff for
BS03681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7917-PA | 1..459 | 17..475 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:22:41 Download gff for
BS03681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 8..476 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:49:30 Download gff for
BS03681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 8..476 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:30 Download gff for
BS03681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30005033..30005055 | 454..476 | 100 | -> | Minus |
3R | 30005288..30005421 | 320..453 | 100 | -> | Minus |
3R | 30009678..30009986 | 8..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:22:41 Download gff for
BS03681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25830755..25830777 | 454..476 | 100 | -> | Minus |
arm_3R | 25831010..25831143 | 320..453 | 100 | -> | Minus |
arm_3R | 25835400..25835708 | 8..319 | 98 | | Minus |
BS03681.5prime Sequence
489 bp (488 high quality bases) assembled on 2005-11-29
> BS03681.5prime
GAAGTTATCAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGA
CCGCCGAGAGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGC
GGCCAGAAGCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGA
GAACGAGTTCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAA
TTCCCATCGCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGAC
GTGGAGTTCTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGG
ACCCGTCTACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCG
ACATGGAGGAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGAC
GAGCACCCAAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAA
TGCCAAGAACAACAAGAAGAAGTAAAAGCTTTCTAGACC
BS03681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7917-PA | 459 | Nlp-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nlp-RB | 914 | CG7917-RB | 83..543 | 16..476 | 2305 | 100 | Plus |
Nlp-RA | 1080 | CG7917-RA | 249..709 | 16..476 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30009676..30009981 | 171..476 | 1530 | 100 | Plus |
3R | 32079331 | 3R | 30005287..30005425 | 38..176 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:24:53 has no hits.
BS03681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:07 Download gff for
BS03681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-PA | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:58 Download gff for
BS03681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7917-PA | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:21 Download gff for
BS03681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 16..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:23 Download gff for
BS03681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 16..484 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:23 Download gff for
BS03681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30009678..30009986 | 173..484 | 98 | | Plus |
3R | 30005033..30005055 | 16..38 | 100 | -> | Plus |
3R | 30005288..30005421 | 39..172 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:21 Download gff for
BS03681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25830755..25830777 | 16..38 | 100 | -> | Plus |
arm_3R | 25831010..25831143 | 39..172 | 100 | -> | Plus |
arm_3R | 25835400..25835708 | 173..484 | 98 | | Plus |
BS03681.complete Sequence
491 bp (491 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634753
> BS03681.complete
GAAGTTATCAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGA
CCGCCGAGAGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGC
GGCCAGAAGCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGA
GAACGAGTTCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAA
TTCCCATCGCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGAC
GTGGAGTTCTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGG
ACCCGTCTACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCG
ACATGGAGGAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGAC
GAGCACCCAAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAA
TGCCAAGAACAACAAGAAGAAGTAAAAGCTTTCTAGACCAT
BS03681.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nlp-RB | 459 | CG7917-PB | 1..459 | 17..475 | 2295 | 100 | Plus |
Nlp-RA | 459 | CG7917-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nlp-RB | 914 | CG7917-RB | 83..543 | 16..476 | 2305 | 100 | Plus |
Nlp-RA | 1080 | CG7917-RA | 249..709 | 16..476 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30009676..30009981 | 171..476 | 1530 | 100 | Plus |
3R | 32079331 | 3R | 30005287..30005425 | 38..176 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:42:04 has no hits.
BS03681.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:51 Download gff for
BS03681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:26 Download gff for
BS03681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 16..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:11 Download gff for
BS03681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 250..706 | 17..473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:51 Download gff for
BS03681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 16..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:35 Download gff for
BS03681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 250..706 | 17..473 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:35 Download gff for
BS03681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30005034..30005055 | 17..38 | 100 | -> | Plus |
3R | 30005288..30005421 | 39..172 | 100 | -> | Plus |
3R | 30009678..30009978 | 173..473 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:11 Download gff for
BS03681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25830756..25830777 | 17..38 | 100 | -> | Plus |
arm_3R | 25831010..25831143 | 39..172 | 100 | -> | Plus |
arm_3R | 25835400..25835700 | 173..473 | 100 | | Plus |
BS03681.pep Sequence
Translation from 16 to 474
> BS03681.pep
MAEESFYGVTLTAESDSVTWDVDEDYARGQKLVIKQILLGAEAKENEFNV
VEVNTPKDSVQIPIAVLKAGETRAVNPDVEFYESKVTFKLIKGSGPVYIH
GHNIKDDVEVVDMEEDDEEDDVAEDEEDEHPKKRAKIENAADGKNAKNNK
KK*
BS03681.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nlp-PB | 152 | CG7917-PB | 1..152 | 1..152 | 780 | 100 | Plus |
Nlp-PA | 152 | CG7917-PA | 1..152 | 1..152 | 780 | 100 | Plus |
CG7911-PB | 156 | CG7911-PB | 1..156 | 1..152 | 283 | 45.7 | Plus |
CG7911-PA | 156 | CG7911-PA | 1..156 | 1..152 | 283 | 45.7 | Plus |