Clone BS03681 Report

Search the DGRC for BS03681

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptNlp-RA
Protein status:BS03681.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03681.3prime Sequence

489 bp (488 high quality bases) assembled on 2005-12-01

> BS03681.3prime
ATGGTCTAGAAAGCTTTTACTTCTTCTTGTTGTTCTTGGCATTTTTACCA
TCGGCGGCGTTCTCGATCTTGGCGCGCTTCTTTGGGTGCTCGTCCTCCTC
GTCCTCGGCGACATCATCCTCCTCGTCATCCTCCTCCATGTCGACCACCT
CCACATCGTCCTTGATGTTGTGCCCGTGGATGTAGACGGGTCCGCTGCCC
TTGATCAGCTTGAATGTCACCTTCGACTCGTAGAACTCCACGTCGGGATT
GACGGCGCGGGTCTCTCCGGCCTTCAATACGGCGATGGGAATTTGCACGG
AGTCCTTGGGTGTGTTCACCTCGACCACGTTGAACTCGTTCTCCTTGGCC
TCGGCGCCCAAGAGGATCTGTTTGATGACCAGCTTCTGGCCGCGTGCGTA
GTCCTCGTCCACATCCCACGTGACGCTGTCGCTCTCGGCGGTCAAAGTGA
CTCCGTAGAATGATTCCTCAGCCATGTCGACTGATAACT

BS03681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7917-PA 459 Nlp-RA 1..459 475..17 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
Nlp-RB 914 CG7917-RB 83..543 476..16 2305 100 Minus
Nlp-RA 1080 CG7917-RA 249..709 476..16 2305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30009676..30009981 321..16 1530 100 Minus
3R 32079331 3R 30005287..30005425 454..316 695 100 Minus
Blast to na_te.dros performed on 2015-01-30 16:12:20 has no hits.

BS03681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:06 Download gff for BS03681.3prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-PA 1..459 17..475 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:57 Download gff for BS03681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7917-PA 1..459 17..475 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:22:41 Download gff for BS03681.3prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 8..476 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:49:30 Download gff for BS03681.3prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 8..476 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:30 Download gff for BS03681.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30005033..30005055 454..476 100 -> Minus
3R 30005288..30005421 320..453 100 -> Minus
3R 30009678..30009986 8..319 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:22:41 Download gff for BS03681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25830755..25830777 454..476 100 -> Minus
arm_3R 25831010..25831143 320..453 100 -> Minus
arm_3R 25835400..25835708 8..319 98   Minus

BS03681.5prime Sequence

489 bp (488 high quality bases) assembled on 2005-11-29

> BS03681.5prime
GAAGTTATCAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGA
CCGCCGAGAGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGC
GGCCAGAAGCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGA
GAACGAGTTCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAA
TTCCCATCGCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGAC
GTGGAGTTCTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGG
ACCCGTCTACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCG
ACATGGAGGAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGAC
GAGCACCCAAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAA
TGCCAAGAACAACAAGAAGAAGTAAAAGCTTTCTAGACC

BS03681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7917-PA 459 Nlp-RA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
Nlp-RB 914 CG7917-RB 83..543 16..476 2305 100 Plus
Nlp-RA 1080 CG7917-RA 249..709 16..476 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30009676..30009981 171..476 1530 100 Plus
3R 32079331 3R 30005287..30005425 38..176 695 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:24:53 has no hits.

BS03681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:07 Download gff for BS03681.5prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-PA 1..459 17..475 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:58 Download gff for BS03681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7917-PA 1..459 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:21 Download gff for BS03681.5prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 16..484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:23 Download gff for BS03681.5prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 16..484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:23 Download gff for BS03681.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30009678..30009986 173..484 98   Plus
3R 30005033..30005055 16..38 100 -> Plus
3R 30005288..30005421 39..172 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:21 Download gff for BS03681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25830755..25830777 16..38 100 -> Plus
arm_3R 25831010..25831143 39..172 100 -> Plus
arm_3R 25835400..25835708 173..484 98   Plus

BS03681.complete Sequence

491 bp (491 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634753

> BS03681.complete
GAAGTTATCAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGA
CCGCCGAGAGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGC
GGCCAGAAGCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGA
GAACGAGTTCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAA
TTCCCATCGCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGAC
GTGGAGTTCTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGG
ACCCGTCTACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCG
ACATGGAGGAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGAC
GAGCACCCAAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAA
TGCCAAGAACAACAAGAAGAAGTAAAAGCTTTCTAGACCAT

BS03681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Nlp-RB 459 CG7917-PB 1..459 17..475 2295 100 Plus
Nlp-RA 459 CG7917-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Nlp-RB 914 CG7917-RB 83..543 16..476 2305 100 Plus
Nlp-RA 1080 CG7917-RA 249..709 16..476 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30009676..30009981 171..476 1530 100 Plus
3R 32079331 3R 30005287..30005425 38..176 695 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:42:04 has no hits.

BS03681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:51 Download gff for BS03681.complete
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 1..459 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:26 Download gff for BS03681.complete
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 16..484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:11 Download gff for BS03681.complete
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 250..706 17..473 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:51 Download gff for BS03681.complete
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 16..484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:35 Download gff for BS03681.complete
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 250..706 17..473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:35 Download gff for BS03681.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30005034..30005055 17..38 100 -> Plus
3R 30005288..30005421 39..172 100 -> Plus
3R 30009678..30009978 173..473 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:11 Download gff for BS03681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25830756..25830777 17..38 100 -> Plus
arm_3R 25831010..25831143 39..172 100 -> Plus
arm_3R 25835400..25835700 173..473 100   Plus

BS03681.pep Sequence

Translation from 16 to 474

> BS03681.pep
MAEESFYGVTLTAESDSVTWDVDEDYARGQKLVIKQILLGAEAKENEFNV
VEVNTPKDSVQIPIAVLKAGETRAVNPDVEFYESKVTFKLIKGSGPVYIH
GHNIKDDVEVVDMEEDDEEDDVAEDEEDEHPKKRAKIENAADGKNAKNNK
KK*

BS03681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Nlp-PB 152 CG7917-PB 1..152 1..152 780 100 Plus
Nlp-PA 152 CG7917-PA 1..152 1..152 780 100 Plus
CG7911-PB 156 CG7911-PB 1..156 1..152 283 45.7 Plus
CG7911-PA 156 CG7911-PA 1..156 1..152 283 45.7 Plus