Clone BS03682 Report

Search the DGRC for BS03682

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:82
Vector:pDNR-Dual
Associated Gene/Transcriptpim-RA
Protein status:BS03682.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03682.3prime Sequence

630 bp (629 high quality bases) assembled on 2005-12-01

> BS03682.3prime
ATGGTCTAGAAAGCTTCTAAAATAGAACATCAATGCCTTCCAAGTTAGGC
AATGGGGGATATAAATTTAATAAGTATTCAGGCTCTGCAGGCTCCATGTT
TTCTGTGTTGTATATGTATGGCAGGTCAGTAAAATCTAGGGGCGGAAGGC
ATCTGTTTTCCAAATTATTTTCCAATGTGCGCAGATCAAGATAAAGTTGA
TCCAATAGTCCTTCATAGCCCTCTTGATTTTCCGACCAGGTCTCTGTGAC
CGGCTTGCTGCAGTTCTTCAAACATTTCTCGTTCGGAAAGTCAGTGTAGT
TGAACAAATTGACGACTCTGTATTCGCAATTCAATACGTAGGCGCCCAAA
AAGCAGCTATTTGTTTTATACCTAACTTCCTCGCGATCCCTGCTGACCAC
ATTTTGTTTGGGGGCCTTTCGCAGCGAAAGCTTGGCAATACTACCCTCGA
GTTTCAGAGAAGTGCTTTTGAACGGGGTTATTCCAGGAGTTTGGTGCATC
ACATTGTCAAGGTTACCAAGAGGTTTCTTCAATACGGAATTTGTAGGAAC
TCCATTTTTAATGGGATTCGCTGGCAAATTAATGCCGGTGTTTTCCTTGT
TTAAAATCTGATCCATGTCGACTGATAACT

BS03682.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5052-PA 600 pim-RA 1..600 616..17 3000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
pim-RB 978 CG5052-RB 111..711 616..16 3005 100 Minus
pim-RA 932 CG5052-RA 111..711 616..16 3005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10363202..10363525 576..253 1620 100 Minus
2L 23513712 2L 10363589..10363825 252..16 1185 100 Minus
2L 23513712 2L 10363099..10363138 616..577 200 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:25:55 has no hits.

BS03682.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:08 Download gff for BS03682.3prime
Subject Subject Range Query Range Percent Splice Strand
pim-PA 1..600 17..616 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:00 Download gff for BS03682.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5052-PA 1..600 17..616 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:30:08 Download gff for BS03682.3prime
Subject Subject Range Query Range Percent Splice Strand
pim-RA 111..721 7..616 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:23 Download gff for BS03682.3prime
Subject Subject Range Query Range Percent Splice Strand
pim-RA 111..721 7..616 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:23 Download gff for BS03682.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10363099..10363138 577..616 100 -> Minus
2L 10363202..10363525 253..576 100 -> Minus
2L 10363589..10363835 7..252 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:08 Download gff for BS03682.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10363099..10363138 577..616 100 -> Minus
arm_2L 10363202..10363525 253..576 100 -> Minus
arm_2L 10363589..10363835 7..252 98   Minus

BS03682.5prime Sequence

630 bp (629 high quality bases) assembled on 2005-11-29

> BS03682.5prime
GAAGTTATCAGTCGACATGGATCAGATTTTAAACAAGGAAAACACCGGCA
TTAATTTGCCAGCGAATCCCATTAAAAATGGAGTTCCTACAAATTCCGTA
TTGAAGAAACCTCTTGGTAACCTTGACAATGTGATGCACCAAACTCCTGG
AATAACCCCGTTCAAAAGCACTTCTCTGAAACTCGAGGGTAGTATTGCCA
AGCTTTCGCTGCGAAAGGCCCCCAAACAAAATGTGGTCAGCAGGGATCGC
GAGGAAGTTAGGTATAAAACAAATAGCTGCTTTTTGGGCGCCTACGTATT
GAATTGCGAATACAGAGTCGTCAATTTGTTCAACTACACTGACTTTCCGA
ACGAGAAATGTTTGAAGAACTGCAGCAAGCCGGTCACAGAGACCTGGTCG
GAAAATCAAGAGGGCTATGAAGGACTATTGGATCAACTTTATCTTGATCT
GCGCACATTGGAAAATAATTTGGAAAACAGATGCCTTCCGCCCCTAGATT
TTACTGACCTGCCATACATATACAACACAGAAAACATGGAGCCTGCAGAG
CCTGAATACTTATTAAATTTATATCCCCCATTGCCTAACTTGGAAGGCAT
TGATGTTCTATTTTAGAAGCTTTCTAGACC

BS03682.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5052-PA 600 pim-RA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
pim-RB 978 CG5052-RB 111..711 17..617 3005 100 Plus
pim-RA 932 CG5052-RA 111..711 17..617 3005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10363202..10363525 57..380 1620 100 Plus
2L 23513712 2L 10363589..10363825 381..617 1185 100 Plus
2L 23513712 2L 10363099..10363138 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:28:07 has no hits.

BS03682.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:09 Download gff for BS03682.5prime
Subject Subject Range Query Range Percent Splice Strand
pim-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:01 Download gff for BS03682.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5052-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:47 Download gff for BS03682.5prime
Subject Subject Range Query Range Percent Splice Strand
pim-RA 111..721 17..626 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:28 Download gff for BS03682.5prime
Subject Subject Range Query Range Percent Splice Strand
pim-RA 111..721 17..626 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:28 Download gff for BS03682.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10363589..10363835 381..626 98   Plus
2L 10363099..10363138 17..56 100 -> Plus
2L 10363202..10363525 57..380 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:47 Download gff for BS03682.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10363099..10363138 17..56 100 -> Plus
arm_2L 10363202..10363525 57..380 100 -> Plus
arm_2L 10363589..10363835 381..626 98   Plus

BS03682.complete Sequence

632 bp (632 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634754

> BS03682.complete
GAAGTTATCAGTCGACATGGATCAGATTTTAAACAAGGAAAACACCGGCA
TTAATTTGCCAGCGAATCCCATTAAAAATGGAGTTCCTACAAATTCCGTA
TTGAAGAAACCTCTTGGTAACCTTGACAATGTGATGCACCAAACTCCTGG
AATAACCCCGTTCAAAAGCACTTCTCTGAAACTCGAGGGTAGTATTGCCA
AGCTTTCGCTGCGAAAGGCCCCCAAACAAAATGTGGTCAGCAGGGATCGC
GAGGAAGTTAGGTATAAAACAAATAGCTGCTTTTTGGGCGCCTACGTATT
GAATTGCGAATACAGAGTCGTCAATTTGTTCAACTACACTGACTTTCCGA
ACGAGAAATGTTTGAAGAACTGCAGCAAGCCGGTCACAGAGACCTGGTCG
GAAAATCAAGAGGGCTATGAAGGACTATTGGATCAACTTTATCTTGATCT
GCGCACATTGGAAAATAATTTGGAAAACAGATGCCTTCCGCCCCTAGATT
TTACTGACCTGCCATACATATACAACACAGAAAACATGGAGCCTGCAGAG
CCTGAATACTTATTAAATTTATATCCCCCATTGCCTAACTTGGAAGGCAT
TGATGTTCTATTTTAGAAGCTTTCTAGACCAT

BS03682.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
pim-RB 600 CG5052-PB 1..600 17..616 3000 100 Plus
pim-RA 600 CG5052-PA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
pim-RB 978 CG5052-RB 111..711 17..617 3005 100 Plus
pim-RA 932 CG5052-RA 111..711 17..617 3005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10363202..10363525 57..380 1620 100 Plus
2L 23513712 2L 10363589..10363825 381..617 1185 100 Plus
2L 23513712 2L 10363099..10363138 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:48:24 has no hits.

BS03682.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:42 Download gff for BS03682.complete
Subject Subject Range Query Range Percent Splice Strand
pim-RA 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:50 Download gff for BS03682.complete
Subject Subject Range Query Range Percent Splice Strand
pim-RA 123..733 17..626 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:41 Download gff for BS03682.complete
Subject Subject Range Query Range Percent Splice Strand
pim-RA 111..710 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:43 Download gff for BS03682.complete
Subject Subject Range Query Range Percent Splice Strand
pim-RA 123..733 17..626 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:12 Download gff for BS03682.complete
Subject Subject Range Query Range Percent Splice Strand
pim-RA 111..710 17..616 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:12 Download gff for BS03682.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10363099..10363138 17..56 100 -> Plus
2L 10363202..10363525 57..380 100 -> Plus
2L 10363589..10363824 381..616 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:41 Download gff for BS03682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10363099..10363138 17..56 100 -> Plus
arm_2L 10363202..10363525 57..380 100 -> Plus
arm_2L 10363589..10363824 381..616 100   Plus

BS03682.pep Sequence

Translation from 16 to 615

> BS03682.pep
MDQILNKENTGINLPANPIKNGVPTNSVLKKPLGNLDNVMHQTPGITPFK
STSLKLEGSIAKLSLRKAPKQNVVSRDREEVRYKTNSCFLGAYVLNCEYR
VVNLFNYTDFPNEKCLKNCSKPVTETWSENQEGYEGLLDQLYLDLRTLEN
NLENRCLPPLDFTDLPYIYNTENMEPAEPEYLLNLYPPLPNLEGIDVLF*

BS03682.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
pim-PB 199 CG5052-PB 1..199 1..199 1064 100 Plus
pim-PA 199 CG5052-PA 1..199 1..199 1064 100 Plus