Clone Sequence Records
BS03682.3prime Sequence
630 bp (629 high quality bases) assembled on 2005-12-01
> BS03682.3prime
ATGGTCTAGAAAGCTTCTAAAATAGAACATCAATGCCTTCCAAGTTAGGC
AATGGGGGATATAAATTTAATAAGTATTCAGGCTCTGCAGGCTCCATGTT
TTCTGTGTTGTATATGTATGGCAGGTCAGTAAAATCTAGGGGCGGAAGGC
ATCTGTTTTCCAAATTATTTTCCAATGTGCGCAGATCAAGATAAAGTTGA
TCCAATAGTCCTTCATAGCCCTCTTGATTTTCCGACCAGGTCTCTGTGAC
CGGCTTGCTGCAGTTCTTCAAACATTTCTCGTTCGGAAAGTCAGTGTAGT
TGAACAAATTGACGACTCTGTATTCGCAATTCAATACGTAGGCGCCCAAA
AAGCAGCTATTTGTTTTATACCTAACTTCCTCGCGATCCCTGCTGACCAC
ATTTTGTTTGGGGGCCTTTCGCAGCGAAAGCTTGGCAATACTACCCTCGA
GTTTCAGAGAAGTGCTTTTGAACGGGGTTATTCCAGGAGTTTGGTGCATC
ACATTGTCAAGGTTACCAAGAGGTTTCTTCAATACGGAATTTGTAGGAAC
TCCATTTTTAATGGGATTCGCTGGCAAATTAATGCCGGTGTTTTCCTTGT
TTAAAATCTGATCCATGTCGACTGATAACT
BS03682.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5052-PA | 600 | pim-RA | 1..600 | 616..17 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pim-RB | 978 | CG5052-RB | 111..711 | 616..16 | 3005 | 100 | Minus |
pim-RA | 932 | CG5052-RA | 111..711 | 616..16 | 3005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10363202..10363525 | 576..253 | 1620 | 100 | Minus |
2L | 23513712 | 2L | 10363589..10363825 | 252..16 | 1185 | 100 | Minus |
2L | 23513712 | 2L | 10363099..10363138 | 616..577 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:25:55 has no hits.
BS03682.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:08 Download gff for
BS03682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pim-PA | 1..600 | 17..616 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:00 Download gff for
BS03682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5052-PA | 1..600 | 17..616 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:30:08 Download gff for
BS03682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pim-RA | 111..721 | 7..616 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:23 Download gff for
BS03682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pim-RA | 111..721 | 7..616 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:23 Download gff for
BS03682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10363099..10363138 | 577..616 | 100 | -> | Minus |
2L | 10363202..10363525 | 253..576 | 100 | -> | Minus |
2L | 10363589..10363835 | 7..252 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:08 Download gff for
BS03682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10363099..10363138 | 577..616 | 100 | -> | Minus |
arm_2L | 10363202..10363525 | 253..576 | 100 | -> | Minus |
arm_2L | 10363589..10363835 | 7..252 | 98 | | Minus |
BS03682.5prime Sequence
630 bp (629 high quality bases) assembled on 2005-11-29
> BS03682.5prime
GAAGTTATCAGTCGACATGGATCAGATTTTAAACAAGGAAAACACCGGCA
TTAATTTGCCAGCGAATCCCATTAAAAATGGAGTTCCTACAAATTCCGTA
TTGAAGAAACCTCTTGGTAACCTTGACAATGTGATGCACCAAACTCCTGG
AATAACCCCGTTCAAAAGCACTTCTCTGAAACTCGAGGGTAGTATTGCCA
AGCTTTCGCTGCGAAAGGCCCCCAAACAAAATGTGGTCAGCAGGGATCGC
GAGGAAGTTAGGTATAAAACAAATAGCTGCTTTTTGGGCGCCTACGTATT
GAATTGCGAATACAGAGTCGTCAATTTGTTCAACTACACTGACTTTCCGA
ACGAGAAATGTTTGAAGAACTGCAGCAAGCCGGTCACAGAGACCTGGTCG
GAAAATCAAGAGGGCTATGAAGGACTATTGGATCAACTTTATCTTGATCT
GCGCACATTGGAAAATAATTTGGAAAACAGATGCCTTCCGCCCCTAGATT
TTACTGACCTGCCATACATATACAACACAGAAAACATGGAGCCTGCAGAG
CCTGAATACTTATTAAATTTATATCCCCCATTGCCTAACTTGGAAGGCAT
TGATGTTCTATTTTAGAAGCTTTCTAGACC
BS03682.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5052-PA | 600 | pim-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pim-RB | 978 | CG5052-RB | 111..711 | 17..617 | 3005 | 100 | Plus |
pim-RA | 932 | CG5052-RA | 111..711 | 17..617 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10363202..10363525 | 57..380 | 1620 | 100 | Plus |
2L | 23513712 | 2L | 10363589..10363825 | 381..617 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 10363099..10363138 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:28:07 has no hits.
BS03682.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:09 Download gff for
BS03682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pim-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:01 Download gff for
BS03682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5052-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:47 Download gff for
BS03682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pim-RA | 111..721 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:28 Download gff for
BS03682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pim-RA | 111..721 | 17..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:28 Download gff for
BS03682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10363589..10363835 | 381..626 | 98 | | Plus |
2L | 10363099..10363138 | 17..56 | 100 | -> | Plus |
2L | 10363202..10363525 | 57..380 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:47 Download gff for
BS03682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10363099..10363138 | 17..56 | 100 | -> | Plus |
arm_2L | 10363202..10363525 | 57..380 | 100 | -> | Plus |
arm_2L | 10363589..10363835 | 381..626 | 98 | | Plus |
BS03682.complete Sequence
632 bp (632 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634754
> BS03682.complete
GAAGTTATCAGTCGACATGGATCAGATTTTAAACAAGGAAAACACCGGCA
TTAATTTGCCAGCGAATCCCATTAAAAATGGAGTTCCTACAAATTCCGTA
TTGAAGAAACCTCTTGGTAACCTTGACAATGTGATGCACCAAACTCCTGG
AATAACCCCGTTCAAAAGCACTTCTCTGAAACTCGAGGGTAGTATTGCCA
AGCTTTCGCTGCGAAAGGCCCCCAAACAAAATGTGGTCAGCAGGGATCGC
GAGGAAGTTAGGTATAAAACAAATAGCTGCTTTTTGGGCGCCTACGTATT
GAATTGCGAATACAGAGTCGTCAATTTGTTCAACTACACTGACTTTCCGA
ACGAGAAATGTTTGAAGAACTGCAGCAAGCCGGTCACAGAGACCTGGTCG
GAAAATCAAGAGGGCTATGAAGGACTATTGGATCAACTTTATCTTGATCT
GCGCACATTGGAAAATAATTTGGAAAACAGATGCCTTCCGCCCCTAGATT
TTACTGACCTGCCATACATATACAACACAGAAAACATGGAGCCTGCAGAG
CCTGAATACTTATTAAATTTATATCCCCCATTGCCTAACTTGGAAGGCAT
TGATGTTCTATTTTAGAAGCTTTCTAGACCAT
BS03682.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pim-RB | 600 | CG5052-PB | 1..600 | 17..616 | 3000 | 100 | Plus |
pim-RA | 600 | CG5052-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pim-RB | 978 | CG5052-RB | 111..711 | 17..617 | 3005 | 100 | Plus |
pim-RA | 932 | CG5052-RA | 111..711 | 17..617 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10363202..10363525 | 57..380 | 1620 | 100 | Plus |
2L | 23513712 | 2L | 10363589..10363825 | 381..617 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 10363099..10363138 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:48:24 has no hits.
BS03682.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:42 Download gff for
BS03682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pim-RA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:50 Download gff for
BS03682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pim-RA | 123..733 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:41 Download gff for
BS03682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pim-RA | 111..710 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:43 Download gff for
BS03682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pim-RA | 123..733 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:12 Download gff for
BS03682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pim-RA | 111..710 | 17..616 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:12 Download gff for
BS03682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10363099..10363138 | 17..56 | 100 | -> | Plus |
2L | 10363202..10363525 | 57..380 | 100 | -> | Plus |
2L | 10363589..10363824 | 381..616 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:41 Download gff for
BS03682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10363099..10363138 | 17..56 | 100 | -> | Plus |
arm_2L | 10363202..10363525 | 57..380 | 100 | -> | Plus |
arm_2L | 10363589..10363824 | 381..616 | 100 | | Plus |
BS03682.pep Sequence
Translation from 16 to 615
> BS03682.pep
MDQILNKENTGINLPANPIKNGVPTNSVLKKPLGNLDNVMHQTPGITPFK
STSLKLEGSIAKLSLRKAPKQNVVSRDREEVRYKTNSCFLGAYVLNCEYR
VVNLFNYTDFPNEKCLKNCSKPVTETWSENQEGYEGLLDQLYLDLRTLEN
NLENRCLPPLDFTDLPYIYNTENMEPAEPEYLLNLYPPLPNLEGIDVLF*
BS03682.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pim-PB | 199 | CG5052-PB | 1..199 | 1..199 | 1064 | 100 | Plus |
pim-PA | 199 | CG5052-PA | 1..199 | 1..199 | 1064 | 100 | Plus |