Clone Sequence Records
BS03683.3prime Sequence
633 bp (632 high quality bases) assembled on 2005-12-01
> BS03683.3prime
ATGGTCTAGAAAGCTTCTAATCGTTTTCCCGCGGCGGCCGCACCACCGCA
TGTCGTTTGATGGCCTCCACCAGCCACTTAATGCCCTCGTCCACGCCCTC
GCCGTGCAGCGCGGATACGGGAATGGTGAGGCAATCTCGCCGCCCGATTA
AAGCACCCGCCTGCTGGAAAACTGGCTTGATCTCCCGCACGCCCATCACA
TCCGGCAGATCCTGTTTGTTGGCCAGGATTAGCAAAGGCACTCCGGACAG
CAGTTCGTTCTTGATCATCTTGTCAAATATCGCTTTGGACTCTTCCATGC
GCTCCCTGTCGTTGGAATCAATCACGTAGATGACGCCATGCGACTCCTGG
TAGTACTTATCCCAGAGAGATTGCAGCTCCTGCTGGCCACCAAGATCCCA
GAAGTTGAGGCGTACGCCCTGCACGTCGATGGTGCCGATGTTGAGGCCCA
CCGTCGTCGTGATCTTGCTCGGATTGAGGCCCTTATAGTTACGCGTAAAC
GTGGTCTTGGCGGCCTCCAGGTAAGTCGTTTTGCCAGCATTGTCCAGGCC
CAGGATTACCACGCAGTAGTCGTCCTTCTGAGTCATGTATTTGTAGAAGC
CGTGCATCAATGTGTACATGTCGACTGATAACT
BS03683.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7039-PA | 603 | CG7039-RA | 1..603 | 619..17 | 3015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfrp1-RA | 1101 | CG7039-RA | 77..682 | 619..14 | 3030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9107675..9107935 | 274..14 | 1305 | 100 | Minus |
X | 23542271 | X | 9107304..9107557 | 527..274 | 1270 | 100 | Minus |
X | 23542271 | X | 9107145..9107237 | 619..527 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:48:51 has no hits.
BS03683.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:10 Download gff for
BS03683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-PA | 1..603 | 17..619 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:02 Download gff for
BS03683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-PA | 1..603 | 17..619 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:07 Download gff for
BS03683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 102..720 | 6..627 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:30 Download gff for
BS03683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfrp1-RA | 70..688 | 6..627 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:30 Download gff for
BS03683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9107138..9107237 | 527..627 | 96 | -> | Minus |
X | 9107305..9107557 | 274..526 | 100 | -> | Minus |
X | 9107676..9107941 | 6..273 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:07 Download gff for
BS03683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9001171..9001270 | 527..627 | 96 | -> | Minus |
arm_X | 9001338..9001590 | 274..526 | 100 | -> | Minus |
arm_X | 9001709..9001974 | 6..273 | 98 | | Minus |
BS03683.5prime Sequence
633 bp (632 high quality bases) assembled on 2005-11-29
> BS03683.5prime
GAAGTTATCAGTCGACATGTACACATTGATGCACGGCTTCTACAAATACA
TGACTCAGAAGGACGACTACTGCGTGGTAATCCTGGGCCTGGACAATGCT
GGCAAAACGACTTACCTGGAGGCCGCCAAGACCACGTTTACGCGTAACTA
TAAGGGCCTCAATCCGAGCAAGATCACGACGACGGTGGGCCTCAACATCG
GCACCATCGACGTGCAGGGCGTACGCCTCAACTTCTGGGATCTTGGTGGC
CAGCAGGAGCTGCAATCTCTCTGGGATAAGTACTACCAGGAGTCGCATGG
CGTCATCTACGTGATTGATTCCAACGACAGGGAGCGCATGGAAGAGTCCA
AAGCGATATTTGACAAGATGATCAAGAACGAACTGCTGTCCGGAGTGCCT
TTGCTAATCCTGGCCAACAAACAGGATCTGCCGGATGTGATGGGCGTGCG
GGAGATCAAGCCAGTTTTCCAGCAGGCGGGTGCTTTAATCGGGCGGCGAG
ATTGCCTCACCATTCCCGTATCCGCGCTGCACGGCGAGGGCGTGGACGAG
GGCATTAAGTGGCTGGTGGAGGCCATCAAACGACATGCGGTGGTGCGGCC
GCCGCGGGAAAACGATTAGAAGCTTTCTAGACC
BS03683.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7039-PA | 603 | CG7039-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfrp1-RA | 1101 | CG7039-RA | 77..682 | 17..622 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9107675..9107935 | 362..622 | 1305 | 100 | Plus |
X | 23542271 | X | 9107304..9107557 | 109..362 | 1270 | 100 | Plus |
X | 23542271 | X | 9107145..9107237 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:43:30 has no hits.
BS03683.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:11 Download gff for
BS03683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-PA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:04 Download gff for
BS03683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-PA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:51:53 Download gff for
BS03683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 102..720 | 9..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:23:55 Download gff for
BS03683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfrp1-RA | 70..688 | 9..630 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:23:55 Download gff for
BS03683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9107138..9107237 | 9..109 | 96 | -> | Plus |
X | 9107305..9107557 | 110..362 | 100 | -> | Plus |
X | 9107676..9107941 | 363..630 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:51:53 Download gff for
BS03683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9001171..9001270 | 9..109 | 96 | -> | Plus |
arm_X | 9001338..9001590 | 110..362 | 100 | -> | Plus |
arm_X | 9001709..9001974 | 363..630 | 98 | | Plus |
BS03683.complete Sequence
635 bp (635 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634755
> BS03683.complete
GAAGTTATCAGTCGACATGTACACATTGATGCACGGCTTCTACAAATACA
TGACTCAGAAGGACGACTACTGCGTGGTAATCCTGGGCCTGGACAATGCT
GGCAAAACGACTTACCTGGAGGCCGCCAAGACCACGTTTACGCGTAACTA
TAAGGGCCTCAATCCGAGCAAGATCACGACGACGGTGGGCCTCAACATCG
GCACCATCGACGTGCAGGGCGTACGCCTCAACTTCTGGGATCTTGGTGGC
CAGCAGGAGCTGCAATCTCTCTGGGATAAGTACTACCAGGAGTCGCATGG
CGTCATCTACGTGATTGATTCCAACGACAGGGAGCGCATGGAAGAGTCCA
AAGCGATATTTGACAAGATGATCAAGAACGAACTGCTGTCCGGAGTGCCT
TTGCTAATCCTGGCCAACAAACAGGATCTGCCGGATGTGATGGGCGTGCG
GGAGATCAAGCCAGTTTTCCAGCAGGCGGGTGCTTTAATCGGGCGGCGAG
ATTGCCTCACCATTCCCGTATCCGCGCTGCACGGCGAGGGCGTGGACGAG
GGCATTAAGTGGCTGGTGGAGGCCATCAAACGACATGCGGTGGTGCGGCC
GCCGCGGGAAAACGATTAGAAGCTTTCTAGACCAT
BS03683.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfrp1-RA | 603 | CG7039-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfrp1-RA | 1101 | CG7039-RA | 77..682 | 17..622 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9107675..9107935 | 362..622 | 1305 | 100 | Plus |
X | 23542271 | X | 9107304..9107557 | 109..362 | 1270 | 100 | Plus |
X | 23542271 | X | 9107145..9107237 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:07:16 has no hits.
BS03683.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:43 Download gff for
BS03683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:52 Download gff for
BS03683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 140..758 | 9..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:10 Download gff for
BS03683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 109..711 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:44 Download gff for
BS03683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 140..758 | 9..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:36 Download gff for
BS03683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfrp1-RA | 77..679 | 17..619 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:36 Download gff for
BS03683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9107145..9107237 | 17..109 | 100 | -> | Plus |
X | 9107305..9107557 | 110..362 | 100 | -> | Plus |
X | 9107676..9107932 | 363..619 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:10 Download gff for
BS03683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9001178..9001270 | 17..109 | 100 | -> | Plus |
arm_X | 9001338..9001590 | 110..362 | 100 | -> | Plus |
arm_X | 9001709..9001965 | 363..619 | 100 | | Plus |
BS03683.pep Sequence
Translation from 16 to 618
> BS03683.pep
MYTLMHGFYKYMTQKDDYCVVILGLDNAGKTTYLEAAKTTFTRNYKGLNP
SKITTTVGLNIGTIDVQGVRLNFWDLGGQQELQSLWDKYYQESHGVIYVI
DSNDRERMEESKAIFDKMIKNELLSGVPLLILANKQDLPDVMGVREIKPV
FQQAGALIGRRDCLTIPVSALHGEGVDEGIKWLVEAIKRHAVVRPPREND
*
BS03683.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfrp1-PA | 200 | CG7039-PA | 1..200 | 1..200 | 1048 | 100 | Plus |
Arl2-PA | 184 | CG7435-PA | 8..178 | 10..189 | 296 | 37 | Plus |
Arf79F-PJ | 182 | CG8385-PJ | 1..178 | 1..188 | 276 | 33.7 | Plus |
Arf79F-PI | 182 | CG8385-PI | 1..178 | 1..188 | 276 | 33.7 | Plus |
Arf79F-PH | 182 | CG8385-PH | 1..178 | 1..188 | 276 | 33.7 | Plus |