Clone BS03683 Report

Search the DGRC for BS03683

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptArfrp1-RA
Protein status:BS03683.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03683.3prime Sequence

633 bp (632 high quality bases) assembled on 2005-12-01

> BS03683.3prime
ATGGTCTAGAAAGCTTCTAATCGTTTTCCCGCGGCGGCCGCACCACCGCA
TGTCGTTTGATGGCCTCCACCAGCCACTTAATGCCCTCGTCCACGCCCTC
GCCGTGCAGCGCGGATACGGGAATGGTGAGGCAATCTCGCCGCCCGATTA
AAGCACCCGCCTGCTGGAAAACTGGCTTGATCTCCCGCACGCCCATCACA
TCCGGCAGATCCTGTTTGTTGGCCAGGATTAGCAAAGGCACTCCGGACAG
CAGTTCGTTCTTGATCATCTTGTCAAATATCGCTTTGGACTCTTCCATGC
GCTCCCTGTCGTTGGAATCAATCACGTAGATGACGCCATGCGACTCCTGG
TAGTACTTATCCCAGAGAGATTGCAGCTCCTGCTGGCCACCAAGATCCCA
GAAGTTGAGGCGTACGCCCTGCACGTCGATGGTGCCGATGTTGAGGCCCA
CCGTCGTCGTGATCTTGCTCGGATTGAGGCCCTTATAGTTACGCGTAAAC
GTGGTCTTGGCGGCCTCCAGGTAAGTCGTTTTGCCAGCATTGTCCAGGCC
CAGGATTACCACGCAGTAGTCGTCCTTCTGAGTCATGTATTTGTAGAAGC
CGTGCATCAATGTGTACATGTCGACTGATAACT

BS03683.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7039-PA 603 CG7039-RA 1..603 619..17 3015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Arfrp1-RA 1101 CG7039-RA 77..682 619..14 3030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9107675..9107935 274..14 1305 100 Minus
X 23542271 X 9107304..9107557 527..274 1270 100 Minus
X 23542271 X 9107145..9107237 619..527 465 100 Minus
Blast to na_te.dros performed on 2015-02-03 13:48:51 has no hits.

BS03683.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:10 Download gff for BS03683.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-PA 1..603 17..619 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:02 Download gff for BS03683.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-PA 1..603 17..619 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:07 Download gff for BS03683.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 102..720 6..627 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:30 Download gff for BS03683.3prime
Subject Subject Range Query Range Percent Splice Strand
Arfrp1-RA 70..688 6..627 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:30 Download gff for BS03683.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9107138..9107237 527..627 96 -> Minus
X 9107305..9107557 274..526 100 -> Minus
X 9107676..9107941 6..273 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:07 Download gff for BS03683.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9001171..9001270 527..627 96 -> Minus
arm_X 9001338..9001590 274..526 100 -> Minus
arm_X 9001709..9001974 6..273 98   Minus

BS03683.5prime Sequence

633 bp (632 high quality bases) assembled on 2005-11-29

> BS03683.5prime
GAAGTTATCAGTCGACATGTACACATTGATGCACGGCTTCTACAAATACA
TGACTCAGAAGGACGACTACTGCGTGGTAATCCTGGGCCTGGACAATGCT
GGCAAAACGACTTACCTGGAGGCCGCCAAGACCACGTTTACGCGTAACTA
TAAGGGCCTCAATCCGAGCAAGATCACGACGACGGTGGGCCTCAACATCG
GCACCATCGACGTGCAGGGCGTACGCCTCAACTTCTGGGATCTTGGTGGC
CAGCAGGAGCTGCAATCTCTCTGGGATAAGTACTACCAGGAGTCGCATGG
CGTCATCTACGTGATTGATTCCAACGACAGGGAGCGCATGGAAGAGTCCA
AAGCGATATTTGACAAGATGATCAAGAACGAACTGCTGTCCGGAGTGCCT
TTGCTAATCCTGGCCAACAAACAGGATCTGCCGGATGTGATGGGCGTGCG
GGAGATCAAGCCAGTTTTCCAGCAGGCGGGTGCTTTAATCGGGCGGCGAG
ATTGCCTCACCATTCCCGTATCCGCGCTGCACGGCGAGGGCGTGGACGAG
GGCATTAAGTGGCTGGTGGAGGCCATCAAACGACATGCGGTGGTGCGGCC
GCCGCGGGAAAACGATTAGAAGCTTTCTAGACC

BS03683.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7039-PA 603 CG7039-RA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Arfrp1-RA 1101 CG7039-RA 77..682 17..622 3030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9107675..9107935 362..622 1305 100 Plus
X 23542271 X 9107304..9107557 109..362 1270 100 Plus
X 23542271 X 9107145..9107237 17..109 465 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:43:30 has no hits.

BS03683.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:11 Download gff for BS03683.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-PA 1..603 17..619 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:04 Download gff for BS03683.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-PA 1..603 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:51:53 Download gff for BS03683.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 102..720 9..630 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:23:55 Download gff for BS03683.5prime
Subject Subject Range Query Range Percent Splice Strand
Arfrp1-RA 70..688 9..630 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:23:55 Download gff for BS03683.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9107138..9107237 9..109 96 -> Plus
X 9107305..9107557 110..362 100 -> Plus
X 9107676..9107941 363..630 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:51:53 Download gff for BS03683.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9001171..9001270 9..109 96 -> Plus
arm_X 9001338..9001590 110..362 100 -> Plus
arm_X 9001709..9001974 363..630 98   Plus

BS03683.complete Sequence

635 bp (635 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634755

> BS03683.complete
GAAGTTATCAGTCGACATGTACACATTGATGCACGGCTTCTACAAATACA
TGACTCAGAAGGACGACTACTGCGTGGTAATCCTGGGCCTGGACAATGCT
GGCAAAACGACTTACCTGGAGGCCGCCAAGACCACGTTTACGCGTAACTA
TAAGGGCCTCAATCCGAGCAAGATCACGACGACGGTGGGCCTCAACATCG
GCACCATCGACGTGCAGGGCGTACGCCTCAACTTCTGGGATCTTGGTGGC
CAGCAGGAGCTGCAATCTCTCTGGGATAAGTACTACCAGGAGTCGCATGG
CGTCATCTACGTGATTGATTCCAACGACAGGGAGCGCATGGAAGAGTCCA
AAGCGATATTTGACAAGATGATCAAGAACGAACTGCTGTCCGGAGTGCCT
TTGCTAATCCTGGCCAACAAACAGGATCTGCCGGATGTGATGGGCGTGCG
GGAGATCAAGCCAGTTTTCCAGCAGGCGGGTGCTTTAATCGGGCGGCGAG
ATTGCCTCACCATTCCCGTATCCGCGCTGCACGGCGAGGGCGTGGACGAG
GGCATTAAGTGGCTGGTGGAGGCCATCAAACGACATGCGGTGGTGCGGCC
GCCGCGGGAAAACGATTAGAAGCTTTCTAGACCAT

BS03683.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Arfrp1-RA 603 CG7039-PA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
Arfrp1-RA 1101 CG7039-RA 77..682 17..622 3030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9107675..9107935 362..622 1305 100 Plus
X 23542271 X 9107304..9107557 109..362 1270 100 Plus
X 23542271 X 9107145..9107237 17..109 465 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:07:16 has no hits.

BS03683.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:43 Download gff for BS03683.complete
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 1..603 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:52 Download gff for BS03683.complete
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 140..758 9..630 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:10 Download gff for BS03683.complete
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 109..711 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:44 Download gff for BS03683.complete
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 140..758 9..630 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:36 Download gff for BS03683.complete
Subject Subject Range Query Range Percent Splice Strand
Arfrp1-RA 77..679 17..619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:36 Download gff for BS03683.complete
Subject Subject Range Query Range Percent Splice Strand
X 9107145..9107237 17..109 100 -> Plus
X 9107305..9107557 110..362 100 -> Plus
X 9107676..9107932 363..619 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:10 Download gff for BS03683.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9001178..9001270 17..109 100 -> Plus
arm_X 9001338..9001590 110..362 100 -> Plus
arm_X 9001709..9001965 363..619 100   Plus

BS03683.pep Sequence

Translation from 16 to 618

> BS03683.pep
MYTLMHGFYKYMTQKDDYCVVILGLDNAGKTTYLEAAKTTFTRNYKGLNP
SKITTTVGLNIGTIDVQGVRLNFWDLGGQQELQSLWDKYYQESHGVIYVI
DSNDRERMEESKAIFDKMIKNELLSGVPLLILANKQDLPDVMGVREIKPV
FQQAGALIGRRDCLTIPVSALHGEGVDEGIKWLVEAIKRHAVVRPPREND
*

BS03683.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Arfrp1-PA 200 CG7039-PA 1..200 1..200 1048 100 Plus
Arl2-PA 184 CG7435-PA 8..178 10..189 296 37 Plus
Arf79F-PJ 182 CG8385-PJ 1..178 1..188 276 33.7 Plus
Arf79F-PI 182 CG8385-PI 1..178 1..188 276 33.7 Plus
Arf79F-PH 182 CG8385-PH 1..178 1..188 276 33.7 Plus