Clone BS03687 Report

Search the DGRC for BS03687

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG10214-RA
Protein status:BS03687.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03687.3prime Sequence

666 bp (665 high quality bases) assembled on 2005-12-01

> BS03687.3prime
ATGGTCTAGAAAGCTTTTATTTAAATAAGTTCGCTTTGTAATACGCAAGC
TCTTTGATGCTTTCTCGGATGTCGTCCAGACTACGATGCGTGAAAGATTT
TTTGGGAGCGGAATCCAGAATTGCGGGATGCCATCGCTTGGCCAGTTCCT
TGATGGTGGACACATCGACGATGCGGTAATGCAGGTAAGCATCTACCAAT
GGCATGAATTTCATAATGAATAGTCGGTCGGTGTAGACGGAGTTCCCACC
AAGCGGACAGGCGCGCTTTGGTATGTTCTTCTCGAGATAGGATAGCACTA
GATTGGAGGCTTCTTCGAGATTCACATCCGAGCTCTTGCATCGATCAATA
AGACCTGAATTGTAATGATGTTTCATGCACCACTCGTTCATCGAGTCGTA
GACCTCCTGCGGATGGTTGATGGCAAAGCATGGTCCCTCCGACTTCACGT
TCAGGTCCTGGTCCGTAATGATGCAGGCCACCTCGAGGATTTTGTCCTTT
TCAATGTCCAGCCCGGTCATCTCCAAGTCCATCCACACGATGTCCGTGTC
TAAGCCACAGGTGCTGCTCATTCTGTCATTTGAATTGAATGCGATGTGGC
TCCGAATTTGGCGGTTCAGGGACAATCCGACGCGTCGAAGGTGAGCAAGC
ATGTCGACTGATAACT

BS03687.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-PA 636 CG10214-RA 1..636 652..17 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-RA 970 CG10214-RA 91..727 652..16 3185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23766762..23767398 16..652 3185 100 Plus
Blast to na_te.dros performed 2015-02-10 19:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1376..1429 286..232 110 69.1 Minus

BS03687.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:14 Download gff for BS03687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:07 Download gff for BS03687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:22:38 Download gff for BS03687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 82..729 11..660 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:42 Download gff for BS03687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 82..729 11..660 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:42 Download gff for BS03687.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23766760..23767407 11..660 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:22:38 Download gff for BS03687.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19592482..19593129 11..660 98   Plus

BS03687.5prime Sequence

666 bp (665 high quality bases) assembled on 2005-12-01

> BS03687.5prime
GAAGTTATCAGTCGACATGCTTGCTCACCTTCGACGCGTCGGATTGTCCC
TGAACCGCCAAATTCGGAGCCACATCGCATTCAATTCAAATGACAGAATG
AGCAGCACCTGTGGCTTAGACACGGACATCGTGTGGATGGACTTGGAGAT
GACCGGGCTGGACATTGAAAAGGACAAAATCCTCGAGGTGGCCTGCATCA
TTACGGACCAGGACCTGAACGTGAAGTCGGAGGGACCATGCTTTGCCATC
AACCATCCGCAGGAGGTCTACGACTCGATGAACGAGTGGTGCATGAAACA
TCATTACAATTCAGGTCTTATTGATCGATGCAAGAGCTCGGATGTGAATC
TCGAAGAAGCCTCCAATCTAGTGCTATCCTATCTCGAGAAGAACATACCA
AAGCGCGCCTGTCCGCTTGGTGGGAACTCCGTCTACACCGACCGACTATT
CATTATGAAATTCATGCCATTGGTAGATGCTTACCTGCATTACCGCATCG
TCGATGTGTCCACCATCAAGGAACTGGCCAAGCGATGGCATCCCGCAATT
CTGGATTCCGCTCCCAAAAAATCTTTCACGCATCGTAGTCTGGACGACAT
CCGAGAAAGCATCAAAGAGCTTGCGTATTACAAAGCGAACTTATTTAAAT
AAAAGCTTTCTAGACC

BS03687.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-PA 636 CG10214-RA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-RA 970 CG10214-RA 91..727 17..653 3185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23766762..23767398 653..17 3185 100 Minus
Blast to na_te.dros performed 2015-02-10 02:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1376..1429 383..437 110 69.1 Plus

BS03687.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:15 Download gff for BS03687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:09 Download gff for BS03687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:47 Download gff for BS03687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 82..729 9..658 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:07:27 Download gff for BS03687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 82..729 9..658 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:07:27 Download gff for BS03687.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23766760..23767407 9..658 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:47 Download gff for BS03687.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19592482..19593129 9..658 98   Minus

BS03687.complete Sequence

668 bp (668 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634756

> BS03687.complete
GAAGTTATCAGTCGACATGCTTGCTCACCTTCGACGCGTCGGATTGTCCC
TGAACCGCCAAATTCGGAGCCACATCGCATTCAATTCAAATGACAGAATG
AGCAGCACCTGTGGCTTAGACACGGACATCGTGTGGATGGACTTGGAGAT
GACCGGGCTGGACATTGAAAAGGACAAAATCCTCGAGGTGGCCTGCATCA
TTACGGACCAGGACCTGAACGTGAAGTCGGAGGGACCATGCTTTGCCATC
AACCATCCGCAGGAGGTCTACGACTCGATGAACGAGTGGTGCATGAAACA
TCATTACAATTCAGGTCTTATTGATCGATGCAAGAGCTCGGATGTGAATC
TCGAAGAAGCCTCCAATCTAGTGCTATCCTATCTCGAGAAGAACATACCA
AAGCGCGCCTGTCCGCTTGGTGGGAACTCCGTCTACACCGACCGACTATT
CATTATGAAATTCATGCCATTGGTAGATGCTTACCTGCATTACCGCATCG
TCGATGTGTCCACCATCAAGGAACTGGCCAAGCGATGGCATCCCGCAATT
CTGGATTCCGCTCCCAAAAAATCTTTCACGCATCGTAGTCTGGACGACAT
CCGAGAAAGCATCAAAGAGCTTGCGTATTACAAAGCGAACTTATTTAAAT
AAAAGCTTTCTAGACCAT

BS03687.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-RA 636 CG10214-PA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-RA 970 CG10214-RA 91..727 17..653 3185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23766762..23767398 653..17 3185 100 Minus
Blast to na_te.dros performed 2014-11-27 19:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1376..1429 383..437 110 69.1 Plus

BS03687.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:45 Download gff for BS03687.complete
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:53 Download gff for BS03687.complete
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 46..693 9..658 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:51 Download gff for BS03687.complete
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 91..724 17..650 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:45 Download gff for BS03687.complete
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 46..693 9..658 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:27 Download gff for BS03687.complete
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 91..724 17..650 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:27 Download gff for BS03687.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23766765..23767398 17..650 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:51 Download gff for BS03687.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19592487..19593120 17..650 100   Minus

BS03687.pep Sequence

Translation from 16 to 651

> BS03687.pep
MLAHLRRVGLSLNRQIRSHIAFNSNDRMSSTCGLDTDIVWMDLEMTGLDI
EKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDSMNEWCMKHHYNSG
LIDRCKSSDVNLEEASNLVLSYLEKNIPKRACPLGGNSVYTDRLFIMKFM
PLVDAYLHYRIVDVSTIKELAKRWHPAILDSAPKKSFTHRSLDDIRESIK
ELAYYKANLFK*

BS03687.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-PA 211 CG10214-PA 1..211 1..211 1113 100 Plus