Clone BS03688 Report

Search the DGRC for BS03688

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG4594-RA
Protein status:BS03688.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03688.3prime Sequence

873 bp (817 high quality bases) assembled on 2005-12-01

> BS03688.3prime
ATGGTCTAGAAAGCTTCTATTTCTTGACCTTGTTCTTTAGGTTTTCAAGA
TAAGCTCCCATAACCTTCTGCACTCCCGGGCTAGAAGCTAGAGCTACAAA
GTCAGCAATATCTTTCTCGCGAATCATCTCAAACTCCTTAATGTTGTCGC
CACGGAACTGGAGCTTGGTCAGTCCGCGGGCCAAAGGATTGACCTTAGCA
AAGGTGCCGATGAAGGCAGCGCACTTCTCCAAGGCCTCTTCCTTGCTGCT
GGCGATCTCATCGATCAGGCCAACTTCAAAGGCCTCCTGTGTGGTGAACA
TACGTCCTTGGGTGAGAGCTCGCTCTGCCACCCGTTTGGGCAGTATGCTA
GCGAAGCCGGACATTAGCCACTTGGGTGCAATGATTCCTAGTTGGGCTTC
GTTTAATCCAATCAAAAAGTTGGGCCGCATCACTCGATACTCACAGGCAG
TGGCCAGCAGGCAACCGCCAGCGGGGGCGTGGCCATTGATGGCTGCTGCC
GTGGGCAAAGTTGTTCCATAGAGGGCAATCCATACATTCTGCAATTCGGT
CCAAACGGTTCGGAGTCGCTCCACGTCTGTGTTATACATTTCAAAGATGT
CCAGGCCAGCTGAGAACACATTGGAGCTGGCAGAGGTTAAAATGAGACCC
CGACTTTTATTGTTCTCAATTTCGCTAATGGAAGTCTGCAGGTCCAAAAG
CAGCTGGACATTTTGGCTATTCACCGGAGGCCGGTTCATCGTGAGAGTAG
CGATTCCTGTCTTATCGTTGATCTCCACTGTGGTCAGCTTGGTGGCGGTG
GACATTAATCTACTTGGAGCCCCGTGGGCCATCAATCTTAAGAAATTTGA
GCGCAGCATGTCGACTGATAACT

BS03688.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-PA 843 CG4594-RA 1..843 859..17 4215 100 Minus
CG4598-PA 846 CG4598-RA 55..131 805..729 185 89.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-RB 1103 CG4594-RB 123..965 859..17 4215 100 Minus
CG4594-RA 1099 CG4594-RA 119..961 859..17 4215 100 Minus
CG4598-RB 1216 CG4598-RB 151..803 805..153 595 73.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9920854..9921321 484..17 2340 100 Minus
2L 23513712 2L 9920374..9920602 859..631 1145 100 Minus
2L 23513712 2L 9920654..9920801 631..484 740 100 Minus
2L 23513712 2L 9918935..9919101 805..639 325 79.6 Minus
2L 23513712 2L 9919379..9919707 481..153 265 72 Minus
Blast to na_te.dros performed on 2015-02-06 15:29:32 has no hits.

BS03688.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:16 Download gff for BS03688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-PA 1..843 17..859 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:11 Download gff for BS03688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-PA 1..843 17..859 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:13:16 Download gff for BS03688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 113..961 17..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:54:48 Download gff for BS03688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 113..961 17..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:54:48 Download gff for BS03688.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9920368..9920601 632..866 98 -> Minus
2L 9920654..9920800 485..631 100 -> Minus
2L 9920854..9921321 17..484 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:13:16 Download gff for BS03688.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9920368..9920601 632..866 98 -> Minus
arm_2L 9920654..9920800 485..631 100 -> Minus
arm_2L 9920854..9921321 17..484 100   Minus

BS03688.5prime Sequence

872 bp (835 high quality bases) assembled on 2005-11-29

> BS03688.5prime
GAAGTTATCAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCC
ACGGGGCTCCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTG
GAGATCAACGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCC
GGTGAATAGCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTA
GCGAAATTGAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGC
TCCAATGTGTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGA
CGTGGAGCGACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTG
CCCTCTATGGAACAACTTTGCCCACGGCAGCAGCCATCAATGGCCACGCC
CCCGCTGGCGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCG
GCCCAACTTTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCAC
CCAAGTGGCTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCA
GAGCGAGCTCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGA
AGTTGGCCTGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGA
AGTGCGCTGCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGC
GGACTGACCAAGCTCCAGTTCCGTGGCGACAACATTAAGGAGTTTGAGAT
GATTCGCGAGAAAGATATTGCTGACTTTGTAGCTCTAGCTTCTAGCCCGG
GAGTGCAGAAGGTTATGGGAGCTTATCTTGAAAACTAAAGAACAAGGTCA
AGAAATAGAAGCTTTCTAGACC

BS03688.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-PA 843 CG4594-RA 1..819 17..835 4095 100 Plus
CG4598-PA 846 CG4598-RA 55..131 71..147 185 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-RB 1103 CG4594-RB 123..965 17..858 4190 99.9 Plus
CG4594-RA 1099 CG4594-RA 119..961 17..858 4190 99.9 Plus
CG4598-RB 1216 CG4598-RB 151..803 71..723 595 73.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9920854..9921321 392..858 2290 99.8 Plus
2L 23513712 2L 9920374..9920602 17..245 1145 100 Plus
2L 23513712 2L 9920654..9920801 245..392 740 100 Plus
2L 23513712 2L 9918935..9919101 71..237 325 79.6 Plus
2L 23513712 2L 9919379..9919707 395..723 265 72 Plus
Blast to na_te.dros performed on 2015-02-02 12:10:01 has no hits.

BS03688.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:17 Download gff for BS03688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-PA 1..843 17..858 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:12 Download gff for BS03688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-PA 1..843 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:52 Download gff for BS03688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 113..961 10..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:33 Download gff for BS03688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 113..961 10..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:33 Download gff for BS03688.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9920368..9920601 10..244 98 -> Plus
2L 9920654..9920800 245..391 100 -> Plus
2L 9920854..9921321 392..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:52 Download gff for BS03688.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9920368..9920601 10..244 98 -> Plus
arm_2L 9920654..9920800 245..391 100 -> Plus
arm_2L 9920854..9921321 392..858 99   Plus

BS03688.complete Sequence

875 bp (875 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634757

> BS03688.complete
GAAGTTATCAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCC
ACGGGGCTCCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTG
GAGATCAACGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCC
GGTGAATAGCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTA
GCGAAATTGAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGC
TCCAATGTGTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGA
CGTGGAGCGACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTG
CCCTCTATGGAACAACTTTGCCCACGGCAGCAGCCATCAATGGCCACGCC
CCCGCTGGCGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCG
GCCCAACTTTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCAC
CCAAGTGGCTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCA
GAGCGAGCTCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGA
AGTTGGCCTGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGA
AGTGCGCTGCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGC
GGACTGACCAAGCTCCAGTTCCGTGGCGACAACATTAAGGAGTTTGAGAT
GATTCGCGAGAAAGATATTGCTGACTTTGTAGCTCTAGCTTCTAGCCCGG
GAGTGCAGAAGGTTATGGGAGCTTATCTTGAAAACCTAAAGAACAAGGTC
AAGAAATAGAAGCTTTCTAGACCAT

BS03688.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-RB 843 CG4594-PB 1..843 17..859 4215 100 Plus
CG4594-RA 843 CG4594-PA 1..843 17..859 4215 100 Plus
CG4598-RB 846 CG4598-PB 55..707 71..723 595 72.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-RB 1103 CG4594-RB 123..965 17..859 4215 100 Plus
CG4594-RA 1099 CG4594-RA 119..961 17..859 4215 100 Plus
CG4598-RB 1216 CG4598-RB 151..803 71..723 595 72.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9920854..9921321 392..859 2340 100 Plus
2L 23513712 2L 9920374..9920602 17..245 1145 100 Plus
2L 23513712 2L 9920654..9920801 245..392 740 100 Plus
2L 23513712 2L 9918935..9919101 71..237 325 79.6 Plus
2L 23513712 2L 9919379..9919707 395..723 265 72 Plus
Blast to na_te.dros performed on 2014-11-27 00:55:25 has no hits.

BS03688.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:31 Download gff for BS03688.complete
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:30 Download gff for BS03688.complete
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 18..866 10..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:41 Download gff for BS03688.complete
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 119..955 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:32 Download gff for BS03688.complete
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 18..866 10..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:41 Download gff for BS03688.complete
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 119..955 17..853 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:41 Download gff for BS03688.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9920374..9920601 17..244 100 -> Plus
2L 9920654..9920800 245..391 100 -> Plus
2L 9920854..9921315 392..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:41 Download gff for BS03688.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9920374..9920601 17..244 100 -> Plus
arm_2L 9920654..9920800 245..391 100 -> Plus
arm_2L 9920854..9921315 392..853 100   Plus

BS03688.pep Sequence

Translation from 16 to 858

> BS03688.pep
MLRSNFLRLMAHGAPSRLMSTATKLTTVEINDKTGIATLTMNRPPVNSQN
VQLLLDLQTSISEIENNKSRGLILTSASSNVFSAGLDIFEMYNTDVERLR
TVWTELQNVWIALYGTTLPTAAAINGHAPAGGCLLATACEYRVMRPNFLI
GLNEAQLGIIAPKWLMSGFASILPKRVAERALTQGRMFTTQEAFEVGLID
EIASSKEEALEKCAAFIGTFAKVNPLARGLTKLQFRGDNIKEFEMIREKD
IADFVALASSPGVQKVMGAYLENLKNKVKK*

BS03688.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-PB 280 CG4594-PB 1..280 1..280 1406 100 Plus
CG4594-PA 280 CG4594-PA 1..280 1..280 1406 100 Plus
CG4598-PB 281 CG4598-PB 1..280 1..280 1001 67.1 Plus
CG4598-PA 281 CG4598-PA 1..280 1..280 1001 67.1 Plus
CG4592-PB 287 CG4592-PB 23..286 7..277 755 54.6 Plus