Clone Sequence Records
BS03688.3prime Sequence
873 bp (817 high quality bases) assembled on 2005-12-01
> BS03688.3prime
ATGGTCTAGAAAGCTTCTATTTCTTGACCTTGTTCTTTAGGTTTTCAAGA
TAAGCTCCCATAACCTTCTGCACTCCCGGGCTAGAAGCTAGAGCTACAAA
GTCAGCAATATCTTTCTCGCGAATCATCTCAAACTCCTTAATGTTGTCGC
CACGGAACTGGAGCTTGGTCAGTCCGCGGGCCAAAGGATTGACCTTAGCA
AAGGTGCCGATGAAGGCAGCGCACTTCTCCAAGGCCTCTTCCTTGCTGCT
GGCGATCTCATCGATCAGGCCAACTTCAAAGGCCTCCTGTGTGGTGAACA
TACGTCCTTGGGTGAGAGCTCGCTCTGCCACCCGTTTGGGCAGTATGCTA
GCGAAGCCGGACATTAGCCACTTGGGTGCAATGATTCCTAGTTGGGCTTC
GTTTAATCCAATCAAAAAGTTGGGCCGCATCACTCGATACTCACAGGCAG
TGGCCAGCAGGCAACCGCCAGCGGGGGCGTGGCCATTGATGGCTGCTGCC
GTGGGCAAAGTTGTTCCATAGAGGGCAATCCATACATTCTGCAATTCGGT
CCAAACGGTTCGGAGTCGCTCCACGTCTGTGTTATACATTTCAAAGATGT
CCAGGCCAGCTGAGAACACATTGGAGCTGGCAGAGGTTAAAATGAGACCC
CGACTTTTATTGTTCTCAATTTCGCTAATGGAAGTCTGCAGGTCCAAAAG
CAGCTGGACATTTTGGCTATTCACCGGAGGCCGGTTCATCGTGAGAGTAG
CGATTCCTGTCTTATCGTTGATCTCCACTGTGGTCAGCTTGGTGGCGGTG
GACATTAATCTACTTGGAGCCCCGTGGGCCATCAATCTTAAGAAATTTGA
GCGCAGCATGTCGACTGATAACT
BS03688.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-PA | 843 | CG4594-RA | 1..843 | 859..17 | 4215 | 100 | Minus |
CG4598-PA | 846 | CG4598-RA | 55..131 | 805..729 | 185 | 89.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-RB | 1103 | CG4594-RB | 123..965 | 859..17 | 4215 | 100 | Minus |
CG4594-RA | 1099 | CG4594-RA | 119..961 | 859..17 | 4215 | 100 | Minus |
CG4598-RB | 1216 | CG4598-RB | 151..803 | 805..153 | 595 | 73.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9920854..9921321 | 484..17 | 2340 | 100 | Minus |
2L | 23513712 | 2L | 9920374..9920602 | 859..631 | 1145 | 100 | Minus |
2L | 23513712 | 2L | 9920654..9920801 | 631..484 | 740 | 100 | Minus |
2L | 23513712 | 2L | 9918935..9919101 | 805..639 | 325 | 79.6 | Minus |
2L | 23513712 | 2L | 9919379..9919707 | 481..153 | 265 | 72 | Minus |
Blast to na_te.dros performed on 2015-02-06 15:29:32 has no hits.
BS03688.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:16 Download gff for
BS03688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-PA | 1..843 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:11 Download gff for
BS03688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-PA | 1..843 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:13:16 Download gff for
BS03688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 113..961 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:54:48 Download gff for
BS03688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 113..961 | 17..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:54:48 Download gff for
BS03688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9920368..9920601 | 632..866 | 98 | -> | Minus |
2L | 9920654..9920800 | 485..631 | 100 | -> | Minus |
2L | 9920854..9921321 | 17..484 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:13:16 Download gff for
BS03688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9920368..9920601 | 632..866 | 98 | -> | Minus |
arm_2L | 9920654..9920800 | 485..631 | 100 | -> | Minus |
arm_2L | 9920854..9921321 | 17..484 | 100 | | Minus |
BS03688.5prime Sequence
872 bp (835 high quality bases) assembled on 2005-11-29
> BS03688.5prime
GAAGTTATCAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCC
ACGGGGCTCCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTG
GAGATCAACGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCC
GGTGAATAGCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTA
GCGAAATTGAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGC
TCCAATGTGTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGA
CGTGGAGCGACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTG
CCCTCTATGGAACAACTTTGCCCACGGCAGCAGCCATCAATGGCCACGCC
CCCGCTGGCGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCG
GCCCAACTTTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCAC
CCAAGTGGCTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCA
GAGCGAGCTCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGA
AGTTGGCCTGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGA
AGTGCGCTGCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGC
GGACTGACCAAGCTCCAGTTCCGTGGCGACAACATTAAGGAGTTTGAGAT
GATTCGCGAGAAAGATATTGCTGACTTTGTAGCTCTAGCTTCTAGCCCGG
GAGTGCAGAAGGTTATGGGAGCTTATCTTGAAAACTAAAGAACAAGGTCA
AGAAATAGAAGCTTTCTAGACC
BS03688.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-PA | 843 | CG4594-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
CG4598-PA | 846 | CG4598-RA | 55..131 | 71..147 | 185 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-RB | 1103 | CG4594-RB | 123..965 | 17..858 | 4190 | 99.9 | Plus |
CG4594-RA | 1099 | CG4594-RA | 119..961 | 17..858 | 4190 | 99.9 | Plus |
CG4598-RB | 1216 | CG4598-RB | 151..803 | 71..723 | 595 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9920854..9921321 | 392..858 | 2290 | 99.8 | Plus |
2L | 23513712 | 2L | 9920374..9920602 | 17..245 | 1145 | 100 | Plus |
2L | 23513712 | 2L | 9920654..9920801 | 245..392 | 740 | 100 | Plus |
2L | 23513712 | 2L | 9918935..9919101 | 71..237 | 325 | 79.6 | Plus |
2L | 23513712 | 2L | 9919379..9919707 | 395..723 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:10:01 has no hits.
BS03688.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:17 Download gff for
BS03688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-PA | 1..843 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:12 Download gff for
BS03688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-PA | 1..843 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:52 Download gff for
BS03688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 113..961 | 10..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:33 Download gff for
BS03688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 113..961 | 10..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:33 Download gff for
BS03688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9920368..9920601 | 10..244 | 98 | -> | Plus |
2L | 9920654..9920800 | 245..391 | 100 | -> | Plus |
2L | 9920854..9921321 | 392..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:52 Download gff for
BS03688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9920368..9920601 | 10..244 | 98 | -> | Plus |
arm_2L | 9920654..9920800 | 245..391 | 100 | -> | Plus |
arm_2L | 9920854..9921321 | 392..858 | 99 | | Plus |
BS03688.complete Sequence
875 bp (875 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634757
> BS03688.complete
GAAGTTATCAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCC
ACGGGGCTCCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTG
GAGATCAACGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCC
GGTGAATAGCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTA
GCGAAATTGAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGC
TCCAATGTGTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGA
CGTGGAGCGACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTG
CCCTCTATGGAACAACTTTGCCCACGGCAGCAGCCATCAATGGCCACGCC
CCCGCTGGCGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCG
GCCCAACTTTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCAC
CCAAGTGGCTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCA
GAGCGAGCTCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGA
AGTTGGCCTGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGA
AGTGCGCTGCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGC
GGACTGACCAAGCTCCAGTTCCGTGGCGACAACATTAAGGAGTTTGAGAT
GATTCGCGAGAAAGATATTGCTGACTTTGTAGCTCTAGCTTCTAGCCCGG
GAGTGCAGAAGGTTATGGGAGCTTATCTTGAAAACCTAAAGAACAAGGTC
AAGAAATAGAAGCTTTCTAGACCAT
BS03688.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-RB | 843 | CG4594-PB | 1..843 | 17..859 | 4215 | 100 | Plus |
CG4594-RA | 843 | CG4594-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
CG4598-RB | 846 | CG4598-PB | 55..707 | 71..723 | 595 | 72.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-RB | 1103 | CG4594-RB | 123..965 | 17..859 | 4215 | 100 | Plus |
CG4594-RA | 1099 | CG4594-RA | 119..961 | 17..859 | 4215 | 100 | Plus |
CG4598-RB | 1216 | CG4598-RB | 151..803 | 71..723 | 595 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9920854..9921321 | 392..859 | 2340 | 100 | Plus |
2L | 23513712 | 2L | 9920374..9920602 | 17..245 | 1145 | 100 | Plus |
2L | 23513712 | 2L | 9920654..9920801 | 245..392 | 740 | 100 | Plus |
2L | 23513712 | 2L | 9918935..9919101 | 71..237 | 325 | 79.6 | Plus |
2L | 23513712 | 2L | 9919379..9919707 | 395..723 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:55:25 has no hits.
BS03688.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:31 Download gff for
BS03688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:30 Download gff for
BS03688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 18..866 | 10..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:41 Download gff for
BS03688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 119..955 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:32 Download gff for
BS03688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 18..866 | 10..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:41 Download gff for
BS03688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 119..955 | 17..853 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:41 Download gff for
BS03688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9920374..9920601 | 17..244 | 100 | -> | Plus |
2L | 9920654..9920800 | 245..391 | 100 | -> | Plus |
2L | 9920854..9921315 | 392..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:41 Download gff for
BS03688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9920374..9920601 | 17..244 | 100 | -> | Plus |
arm_2L | 9920654..9920800 | 245..391 | 100 | -> | Plus |
arm_2L | 9920854..9921315 | 392..853 | 100 | | Plus |
BS03688.pep Sequence
Translation from 16 to 858
> BS03688.pep
MLRSNFLRLMAHGAPSRLMSTATKLTTVEINDKTGIATLTMNRPPVNSQN
VQLLLDLQTSISEIENNKSRGLILTSASSNVFSAGLDIFEMYNTDVERLR
TVWTELQNVWIALYGTTLPTAAAINGHAPAGGCLLATACEYRVMRPNFLI
GLNEAQLGIIAPKWLMSGFASILPKRVAERALTQGRMFTTQEAFEVGLID
EIASSKEEALEKCAAFIGTFAKVNPLARGLTKLQFRGDNIKEFEMIREKD
IADFVALASSPGVQKVMGAYLENLKNKVKK*
BS03688.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-PB | 280 | CG4594-PB | 1..280 | 1..280 | 1406 | 100 | Plus |
CG4594-PA | 280 | CG4594-PA | 1..280 | 1..280 | 1406 | 100 | Plus |
CG4598-PB | 281 | CG4598-PB | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4598-PA | 281 | CG4598-PA | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4592-PB | 287 | CG4592-PB | 23..286 | 7..277 | 755 | 54.6 | Plus |