Clone BS03695 Report

Search the DGRC for BS03695

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:95
Vector:pDNR-Dual
Associated Gene/Transcriptvnc-RA
Protein status:BS03695.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03695.3prime Sequence

621 bp (620 high quality bases) assembled on 2005-12-01

> BS03695.3prime
ATGGTCTAGAAAGCTTTCAGCAACAATGGCCATCGTGACCGCTGTGGTTG
TGCGAGTGGCCATGTCCGCCGGATCTGTGGACCGCCTTCTCCTCCTCCTC
GCCTGACTGCTTCGCAGCCTTGGCCTGATCCTCATCGGCAAACTCGCTGA
GGTCGCGTCGCATGGCATATGCATCCTCGCCATCGGCATAGTACTTGGGC
TCCACCTCGATGATCTTGAACTTGAGGGCGTTGGTGTAGAGGTTCAGGGC
AGCCCGATTGCTCTTCCTCACGTGCAGGGACACGTACTGGGCATTGAAGC
ACTCGACCATGGCCTGGGAGGCCTGATTCATGAGCTTCTGGGCCAGGCCC
AATCGCCGATAGGAACGCTTGACCGCTAGCGAGGTGATGTGCCCATGGCG
GCTCTCCTCATTGGGCTCCGGCTCCTCCATCTTGGCCAGGACATAGCCCA
CAATGGCGCCCTTGTCGTCAACGGCCACGTAGCTAAGCTGAGGCCAGGTT
AGTCCGTGGTAAAAGTAGTACTTCATCTGGTAGTTTTCGGGTAGACACAG
CAGATTGCAGTGCTGCATGGTCATTAGGTCTTCCGGTTTTGCGCAGCGGA
TGTTCATGTCGACTGATAACT

BS03695.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11989-PA 591 Ard1-RA 1..591 607..17 2955 100 Minus
CG11989-PB 591 Ard1-RB 1..591 607..17 2955 100 Minus
CG11989-PC 591 Ard1-RC 1..591 607..17 2955 100 Minus
CG11989-PE 591 Ard1-RE 1..591 607..17 2955 100 Minus
CG11989-PD 591 Ard1-RD 1..591 607..17 2955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
vnc-RB 1016 CG11989-RB 268..867 608..9 2970 99.7 Minus
vnc-RC 1137 CG11989-RC 389..988 608..9 2970 99.7 Minus
vnc-RD 1176 CG11989-RD 428..1027 608..9 2970 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9973275..9973874 608..9 2970 99.7 Minus
Blast to na_te.dros performed 2015-02-06 15:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 2766..2827 117..58 106 67.7 Minus

BS03695.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:27 Download gff for BS03695.3prime
Subject Subject Range Query Range Percent Splice Strand
Ard1-PA 1..591 17..607 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:26 Download gff for BS03695.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11989-PD 1..591 17..607 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:13:13 Download gff for BS03695.3prime
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 424..1027 9..616 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:54:44 Download gff for BS03695.3prime
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 424..1027 9..616 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:54:44 Download gff for BS03695.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9973271..9973874 9..616 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:13:13 Download gff for BS03695.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9966371..9966974 9..616 99   Minus

BS03695.5prime Sequence

621 bp (620 high quality bases) assembled on 2005-11-29

> BS03695.5prime
GAAGTTATCAGTCGACATGAACATCCGCTGCGCAAAACCGGAAGACCTAA
TGACCATGCAGCACTGCAATCTGCTGTGTCTACCCGAAAACTACCAGATG
AAGTACTACTTTTACCACGGACTAACCTGGCCTCAGCTTAGCTACGTGGC
CGTTGACGACAAGGGCGCCATTGTGGGCTATGTCCTGGCCAAGATGGAGG
AGCCGGAGCCCAATGAGGAGAGCCGCCATGGGCACATCACCTCGCTAGCG
GTCAAGCGTTCCTATCGGCGATTGGGCCTGGCCCAGAAGCTCATGAATCA
GGCCTCCCAGGCCATGGTCGAGTGCTTCAATGCCCAGTACGTGTCCCTGC
ACGTGAGGAAGAGCAATCGGGCTGCCCTGAACCTCTACACCAACGCCCTC
AAGTTCAAGATCATCGAGGTGGAGCCCAAGTACTATGCCGATGGCGAGGA
TGCATATGCCATGCGACGCGACCTCAGCGAGTTTGCCGATGAGGATCAGG
CCAAGGCTGCGAAGCAGTCAGGCGAGGAGGAGGAGAAGGCGGTCCACAGA
TCCGGCGGACATGGCCACTCGCACAACCACAGCGGTCACGATGGCCATTG
TTGCTGAAAGCTTTCTAGACC

BS03695.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11989-PA 591 Ard1-RA 1..591 17..607 2955 100 Plus
CG11989-PB 591 Ard1-RB 1..591 17..607 2955 100 Plus
CG11989-PC 591 Ard1-RC 1..591 17..607 2955 100 Plus
CG11989-PE 591 Ard1-RE 1..591 17..607 2955 100 Plus
CG11989-PD 591 Ard1-RD 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
vnc-RB 1016 CG11989-RB 268..867 16..615 2970 99.7 Plus
vnc-RC 1137 CG11989-RC 389..988 16..615 2970 99.7 Plus
vnc-RD 1176 CG11989-RD 428..1027 16..615 2970 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9973275..9973874 16..615 2970 99.7 Plus
Blast to na_te.dros performed 2015-02-12 06:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 2766..2827 507..566 106 67.7 Plus

BS03695.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:28 Download gff for BS03695.5prime
Subject Subject Range Query Range Percent Splice Strand
Ard1-PA 1..591 17..607 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:27 Download gff for BS03695.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11989-PD 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:46 Download gff for BS03695.5prime
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 424..1027 8..615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:28 Download gff for BS03695.5prime
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 424..1027 8..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:28 Download gff for BS03695.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9973271..9973874 8..615 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:46 Download gff for BS03695.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9966371..9966974 8..615 99   Plus

BS03695.complete Sequence

623 bp (623 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634758

> BS03695.complete
GAAGTTATCAGTCGACATGAACATCCGCTGCGCAAAACCGGAAGACCTAA
TGACCATGCAGCACTGCAATCTGCTGTGTCTACCCGAAAACTACCAGATG
AAGTACTACTTTTACCACGGACTAACCTGGCCTCAGCTTAGCTACGTGGC
CGTTGACGACAAGGGCGCCATTGTGGGCTATGTCCTGGCCAAGATGGAGG
AGCCGGAGCCCAATGAGGAGAGCCGCCATGGGCACATCACCTCGCTAGCG
GTCAAGCGTTCCTATCGGCGATTGGGCCTGGCCCAGAAGCTCATGAATCA
GGCCTCCCAGGCCATGGTCGAGTGCTTCAATGCCCAGTACGTGTCCCTGC
ACGTGAGGAAGAGCAATCGGGCTGCCCTGAACCTCTACACCAACGCCCTC
AAGTTCAAGATCATCGAGGTGGAGCCCAAGTACTATGCCGATGGCGAGGA
TGCATATGCCATGCGACGCGACCTCAGCGAGTTTGCCGATGAGGATCAGG
CCAAGGCTGCGAAGCAGTCAGGCGAGGAGGAGGAGAAGGCGGTCCACAGA
TCCGGCGGACATGGCCACTCGCACAACCACAGCGGTCACGATGGCCATTG
TTGCTGAAAGCTTTCTAGACCAT

BS03695.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
vnc-RB 591 CG11989-PB 1..591 17..607 2955 100 Plus
vnc-RC 591 CG11989-PC 1..591 17..607 2955 100 Plus
vnc-RD 591 CG11989-PD 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
vnc-RB 1016 CG11989-RB 268..867 16..615 2970 99.7 Plus
vnc-RC 1137 CG11989-RC 389..988 16..615 2970 99.7 Plus
vnc-RD 1176 CG11989-RD 428..1027 16..615 2970 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9973275..9973874 16..615 2970 99.7 Plus
Blast to na_te.dros performed 2014-11-27 07:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 2766..2827 507..566 106 67.7 Plus

BS03695.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:46 Download gff for BS03695.complete
Subject Subject Range Query Range Percent Splice Strand
Ard1-RC 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:55 Download gff for BS03695.complete
Subject Subject Range Query Range Percent Splice Strand
Ard1-RC 454..1057 8..615 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:19 Download gff for BS03695.complete
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 429..1018 17..606 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:46 Download gff for BS03695.complete
Subject Subject Range Query Range Percent Splice Strand
Ard1-RC 454..1057 8..615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:14 Download gff for BS03695.complete
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 429..1018 17..606 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:14 Download gff for BS03695.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9973276..9973865 17..606 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:19 Download gff for BS03695.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9966376..9966965 17..606 100   Plus

BS03695.pep Sequence

Translation from 16 to 606

> BS03695.pep
MNIRCAKPEDLMTMQHCNLLCLPENYQMKYYFYHGLTWPQLSYVAVDDKG
AIVGYVLAKMEEPEPNEESRHGHITSLAVKRSYRRLGLAQKLMNQASQAM
VECFNAQYVSLHVRKSNRAALNLYTNALKFKIIEVEPKYYADGEDAYAMR
RDLSEFADEDQAKAAKQSGEEEEKAVHRSGGHGHSHNHSGHDGHCC*

BS03695.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
vnc-PB 196 CG11989-PB 1..196 1..196 1054 100 Plus
vnc-PC 196 CG11989-PC 1..196 1..196 1054 100 Plus
vnc-PD 196 CG11989-PD 1..196 1..196 1054 100 Plus
vnc-PE 196 CG11989-PE 1..196 1..196 1054 100 Plus
vnc-PA 196 CG11989-PA 1..196 1..196 1054 100 Plus