Clone Sequence Records
BS03695.3prime Sequence
621 bp (620 high quality bases) assembled on 2005-12-01
> BS03695.3prime
ATGGTCTAGAAAGCTTTCAGCAACAATGGCCATCGTGACCGCTGTGGTTG
TGCGAGTGGCCATGTCCGCCGGATCTGTGGACCGCCTTCTCCTCCTCCTC
GCCTGACTGCTTCGCAGCCTTGGCCTGATCCTCATCGGCAAACTCGCTGA
GGTCGCGTCGCATGGCATATGCATCCTCGCCATCGGCATAGTACTTGGGC
TCCACCTCGATGATCTTGAACTTGAGGGCGTTGGTGTAGAGGTTCAGGGC
AGCCCGATTGCTCTTCCTCACGTGCAGGGACACGTACTGGGCATTGAAGC
ACTCGACCATGGCCTGGGAGGCCTGATTCATGAGCTTCTGGGCCAGGCCC
AATCGCCGATAGGAACGCTTGACCGCTAGCGAGGTGATGTGCCCATGGCG
GCTCTCCTCATTGGGCTCCGGCTCCTCCATCTTGGCCAGGACATAGCCCA
CAATGGCGCCCTTGTCGTCAACGGCCACGTAGCTAAGCTGAGGCCAGGTT
AGTCCGTGGTAAAAGTAGTACTTCATCTGGTAGTTTTCGGGTAGACACAG
CAGATTGCAGTGCTGCATGGTCATTAGGTCTTCCGGTTTTGCGCAGCGGA
TGTTCATGTCGACTGATAACT
BS03695.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11989-PA | 591 | Ard1-RA | 1..591 | 607..17 | 2955 | 100 | Minus |
CG11989-PB | 591 | Ard1-RB | 1..591 | 607..17 | 2955 | 100 | Minus |
CG11989-PC | 591 | Ard1-RC | 1..591 | 607..17 | 2955 | 100 | Minus |
CG11989-PE | 591 | Ard1-RE | 1..591 | 607..17 | 2955 | 100 | Minus |
CG11989-PD | 591 | Ard1-RD | 1..591 | 607..17 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vnc-RB | 1016 | CG11989-RB | 268..867 | 608..9 | 2970 | 99.7 | Minus |
vnc-RC | 1137 | CG11989-RC | 389..988 | 608..9 | 2970 | 99.7 | Minus |
vnc-RD | 1176 | CG11989-RD | 428..1027 | 608..9 | 2970 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9973275..9973874 | 608..9 | 2970 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-06 15:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2766..2827 | 117..58 | 106 | 67.7 | Minus |
BS03695.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:27 Download gff for
BS03695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ard1-PA | 1..591 | 17..607 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:26 Download gff for
BS03695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11989-PD | 1..591 | 17..607 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:13:13 Download gff for
BS03695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 424..1027 | 9..616 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:54:44 Download gff for
BS03695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 424..1027 | 9..616 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:54:44 Download gff for
BS03695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9973271..9973874 | 9..616 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:13:13 Download gff for
BS03695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9966371..9966974 | 9..616 | 99 | | Minus |
BS03695.5prime Sequence
621 bp (620 high quality bases) assembled on 2005-11-29
> BS03695.5prime
GAAGTTATCAGTCGACATGAACATCCGCTGCGCAAAACCGGAAGACCTAA
TGACCATGCAGCACTGCAATCTGCTGTGTCTACCCGAAAACTACCAGATG
AAGTACTACTTTTACCACGGACTAACCTGGCCTCAGCTTAGCTACGTGGC
CGTTGACGACAAGGGCGCCATTGTGGGCTATGTCCTGGCCAAGATGGAGG
AGCCGGAGCCCAATGAGGAGAGCCGCCATGGGCACATCACCTCGCTAGCG
GTCAAGCGTTCCTATCGGCGATTGGGCCTGGCCCAGAAGCTCATGAATCA
GGCCTCCCAGGCCATGGTCGAGTGCTTCAATGCCCAGTACGTGTCCCTGC
ACGTGAGGAAGAGCAATCGGGCTGCCCTGAACCTCTACACCAACGCCCTC
AAGTTCAAGATCATCGAGGTGGAGCCCAAGTACTATGCCGATGGCGAGGA
TGCATATGCCATGCGACGCGACCTCAGCGAGTTTGCCGATGAGGATCAGG
CCAAGGCTGCGAAGCAGTCAGGCGAGGAGGAGGAGAAGGCGGTCCACAGA
TCCGGCGGACATGGCCACTCGCACAACCACAGCGGTCACGATGGCCATTG
TTGCTGAAAGCTTTCTAGACC
BS03695.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11989-PA | 591 | Ard1-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
CG11989-PB | 591 | Ard1-RB | 1..591 | 17..607 | 2955 | 100 | Plus |
CG11989-PC | 591 | Ard1-RC | 1..591 | 17..607 | 2955 | 100 | Plus |
CG11989-PE | 591 | Ard1-RE | 1..591 | 17..607 | 2955 | 100 | Plus |
CG11989-PD | 591 | Ard1-RD | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vnc-RB | 1016 | CG11989-RB | 268..867 | 16..615 | 2970 | 99.7 | Plus |
vnc-RC | 1137 | CG11989-RC | 389..988 | 16..615 | 2970 | 99.7 | Plus |
vnc-RD | 1176 | CG11989-RD | 428..1027 | 16..615 | 2970 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9973275..9973874 | 16..615 | 2970 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-12 06:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2766..2827 | 507..566 | 106 | 67.7 | Plus |
BS03695.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:28 Download gff for
BS03695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ard1-PA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:27 Download gff for
BS03695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11989-PD | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:46 Download gff for
BS03695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 424..1027 | 8..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:28 Download gff for
BS03695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 424..1027 | 8..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:28 Download gff for
BS03695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9973271..9973874 | 8..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:46 Download gff for
BS03695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9966371..9966974 | 8..615 | 99 | | Plus |
BS03695.complete Sequence
623 bp (623 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634758
> BS03695.complete
GAAGTTATCAGTCGACATGAACATCCGCTGCGCAAAACCGGAAGACCTAA
TGACCATGCAGCACTGCAATCTGCTGTGTCTACCCGAAAACTACCAGATG
AAGTACTACTTTTACCACGGACTAACCTGGCCTCAGCTTAGCTACGTGGC
CGTTGACGACAAGGGCGCCATTGTGGGCTATGTCCTGGCCAAGATGGAGG
AGCCGGAGCCCAATGAGGAGAGCCGCCATGGGCACATCACCTCGCTAGCG
GTCAAGCGTTCCTATCGGCGATTGGGCCTGGCCCAGAAGCTCATGAATCA
GGCCTCCCAGGCCATGGTCGAGTGCTTCAATGCCCAGTACGTGTCCCTGC
ACGTGAGGAAGAGCAATCGGGCTGCCCTGAACCTCTACACCAACGCCCTC
AAGTTCAAGATCATCGAGGTGGAGCCCAAGTACTATGCCGATGGCGAGGA
TGCATATGCCATGCGACGCGACCTCAGCGAGTTTGCCGATGAGGATCAGG
CCAAGGCTGCGAAGCAGTCAGGCGAGGAGGAGGAGAAGGCGGTCCACAGA
TCCGGCGGACATGGCCACTCGCACAACCACAGCGGTCACGATGGCCATTG
TTGCTGAAAGCTTTCTAGACCAT
BS03695.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vnc-RB | 591 | CG11989-PB | 1..591 | 17..607 | 2955 | 100 | Plus |
vnc-RC | 591 | CG11989-PC | 1..591 | 17..607 | 2955 | 100 | Plus |
vnc-RD | 591 | CG11989-PD | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vnc-RB | 1016 | CG11989-RB | 268..867 | 16..615 | 2970 | 99.7 | Plus |
vnc-RC | 1137 | CG11989-RC | 389..988 | 16..615 | 2970 | 99.7 | Plus |
vnc-RD | 1176 | CG11989-RD | 428..1027 | 16..615 | 2970 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9973275..9973874 | 16..615 | 2970 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-27 07:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2766..2827 | 507..566 | 106 | 67.7 | Plus |
BS03695.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:46 Download gff for
BS03695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ard1-RC | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:55 Download gff for
BS03695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ard1-RC | 454..1057 | 8..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:19 Download gff for
BS03695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 429..1018 | 17..606 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:46 Download gff for
BS03695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ard1-RC | 454..1057 | 8..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:14 Download gff for
BS03695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 429..1018 | 17..606 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:14 Download gff for
BS03695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9973276..9973865 | 17..606 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:19 Download gff for
BS03695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9966376..9966965 | 17..606 | 100 | | Plus |
BS03695.pep Sequence
Translation from 16 to 606
> BS03695.pep
MNIRCAKPEDLMTMQHCNLLCLPENYQMKYYFYHGLTWPQLSYVAVDDKG
AIVGYVLAKMEEPEPNEESRHGHITSLAVKRSYRRLGLAQKLMNQASQAM
VECFNAQYVSLHVRKSNRAALNLYTNALKFKIIEVEPKYYADGEDAYAMR
RDLSEFADEDQAKAAKQSGEEEEKAVHRSGGHGHSHNHSGHDGHCC*
BS03695.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vnc-PB | 196 | CG11989-PB | 1..196 | 1..196 | 1054 | 100 | Plus |
vnc-PC | 196 | CG11989-PC | 1..196 | 1..196 | 1054 | 100 | Plus |
vnc-PD | 196 | CG11989-PD | 1..196 | 1..196 | 1054 | 100 | Plus |
vnc-PE | 196 | CG11989-PE | 1..196 | 1..196 | 1054 | 100 | Plus |
vnc-PA | 196 | CG11989-PA | 1..196 | 1..196 | 1054 | 100 | Plus |