Clone Sequence Records
BS03704.3prime Sequence
882 bp (794 high quality bases) assembled on 2005-12-01
> BS03704.3prime
ATGGTCTAGAAAGCTTCTAACTGTAAAGATCATCGTCGCCGTTGTCGCCG
GGCGAGTTAACTGGCAAGTTGTTACCAGATCCTGAGGTGTTGCCGGTTTG
ACCGGGGAATCTGAAGTTCTGTCCGAATCCACGGGACTGCTGCAAAGTCT
GGGCAAACATCTCGTACTTCCTGATGTCATTATCGGACACCGAACGGCGA
GCGAACTTCATGGCCTCCTCGAAGTGGGCGCTGGTAATCTCCGGCACTGG
ATCGTCCTCGTCCATGTCCATCGCGGAGTTCTGATTTTCGGCGCGCTCCT
TCTCGCGACGAATTTCAGCCTCGATGGCCTGTCGGATGGCCAGCTTGCAA
GCCCGCTGGCAGATCTCGGTCAGATCGGCGCCAGAGAAGCCCTGCGTCAC
CTTGGCGATGTAGGTAAGGTCTACTTCCTTGGCCAGCGGCGACTTGCGCA
AGTTAGCCTTCAGGATAGCCTCACGCGATTTGTCGTCGGGCAGCGGAATA
TAGATCAACTGATCCAGACGGCCCGGACGGAGGATGGCCGGATCGATAAT
GTCCGGGCGATTGGTGGCTCCGATGATGAACACATTCTTCTTGGCTCCCA
TGCCATCCATTTCGGTAAGGATCTGATTGATCACACGATCAGCGGCGCCG
CCAGCATCGCCGACATTACCGCCACGGGCTTTGGCGATCGAGTCCAGCTC
GTCAAAGAAGAGCACACAAGGAGCCGCCGAGCGAGCCTTATCGAAGATGT
CGCGCACGTTGGCCTCAGACTCGCCGAACCACATGGTCAGCAGCTCGGGA
CCCTTGACTGAGATGAAGTTCGCCTGGCACTCGTTGGCAATGGCCTTGGC
CAGCAGCGTCTTACCGCAACCAGGGGGTCCGT
BS03704.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2331-PA | 2406 | TER94-RA | 1541..2406 | 882..17 | 4230 | 99.5 | Minus |
| CG2331-PB | 894 | TER94-RB | 29..894 | 882..17 | 4230 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RD | 3125 | CG2331-RD | 1778..2644 | 882..16 | 4275 | 99.5 | Minus |
| TER94-RC | 3058 | CG2331-RC | 1711..2577 | 882..16 | 4275 | 99.5 | Minus |
| TER94-RA | 3016 | CG2331-RA | 1669..2535 | 882..16 | 4275 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9992080..9992696 | 882..266 | 3040 | 99.5 | Minus |
| 2R | 25286936 | 2R | 9992763..9992917 | 265..111 | 760 | 99.4 | Minus |
| 2R | 25286936 | 2R | 9992981..9993078 | 113..16 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:53:50 has no hits.
BS03704.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:36 Download gff for
BS03704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-PB | 29..894 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:37 Download gff for
BS03704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2331-PB | 29..894 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:08 Download gff for
BS03704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 1669..2542 | 6..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:46:50 Download gff for
BS03704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 1669..2542 | 6..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:46:50 Download gff for
BS03704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9992763..9992917 | 111..265 | 99 | -> | Minus |
| 2R | 9992080..9992696 | 266..882 | 99 | -> | Minus |
| 2R | 9992984..9993085 | 6..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:08 Download gff for
BS03704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5879585..5880201 | 266..882 | 99 | -> | Minus |
| arm_2R | 5880268..5880422 | 111..265 | 99 | -> | Minus |
| arm_2R | 5880489..5880590 | 6..110 | 97 | | Minus |
BS03704.5prime Sequence
780 bp (768 high quality bases) assembled on 2005-12-01
> BS03704.5prime
GAAGTTATCAGTCGACATGGCAGATTCCAAGGGTGAAGATCTGGCTACGG
CGATCCTGAAGCGCAAGGACCGTCCCAACCGACTGATTGTGGAAGAGGCG
CAGAATGACGACAACTCTGTGGTGTCGCTATCGCAGGCGAAGATGGATGA
GCTGCAGCTCTTCCGTGGCGACACCGTGATTCTGAAGGGTAAGCGCCGAA
AGGAGACGGTGTGCATCGTGCTCTCGGACGACACCTGTCCCGACGAGAAG
ATCCGCATGAACCGCGTGGTGCGCAACAACCTGTGCGTCCATCTTTCAGA
TGTGGTTTCCGTGCAGTCCTGCCCGGACGTCAAGTACGGCAAACGGGTGC
GCATCCTGCCCATCGACGAAAGCACCGAAGGCGTTACCGGCAACCTGTTC
GAGATCTATCTGAAGCCGTACTTCCTAGAGGCCTATCGGCCAATCCACAT
GGGCGACAACTTTATTGTGCGCGCCGCCATGCGTCCTATTGAGTTCAAGG
TGGTGCTGACCGACCCGGAGCCCTACTGCATCGTAGCTCCCGAGACTGTA
ATCTTCTGCGACGGTGATCCAATCAAGCGCGAGGAGGAGGAGGAGTCCCT
AAACGCCGTTGGCTACGATGATATCGGTGGTTGCCGCAAGCAGCTGGCCC
AGATCAAGGAGATGGTTGAGTTGCCTTTGCGGCATCCATCGCTCTTCAAG
GCCATTGGTGTGAAGCCACCGCGTGGTATTCTTATGTACGGTCCCCCGGG
TACCGGTAAGACCCTGATTGCCAGGGCTGT
BS03704.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2331-PA | 2406 | TER94-RA | 1..764 | 17..780 | 3745 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RA | 3016 | CG2331-RA | 128..892 | 16..780 | 3780 | 99.6 | Plus |
| TER94-RE | 3055 | CG2331-RE | 183..934 | 29..780 | 3700 | 99.5 | Plus |
| TER94-RC | 3058 | CG2331-RC | 183..934 | 29..780 | 3700 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9990657..9991303 | 134..780 | 3190 | 99.5 | Plus |
| 2R | 25286936 | 2R | 9990470..9990574 | 33..137 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:46:37 has no hits.
BS03704.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:37 Download gff for
BS03704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-PA | 1..764 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:38 Download gff for
BS03704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2331-PA | 1..764 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:03:55 Download gff for
BS03704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 121..892 | 10..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:46:39 Download gff for
BS03704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 121..892 | 10..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:46:39 Download gff for
BS03704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9990471..9990573 | 34..136 | 100 | -> | Plus |
| 2R | 9990660..9991303 | 137..780 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:03:55 Download gff for
BS03704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5877976..5878078 | 34..136 | 100 | -> | Plus |
| arm_2R | 5878165..5878808 | 137..780 | 99 | | Plus |
BS03704.complete Sequence
2438 bp assembled on 2010-05-10
GenBank Submission: KX794758
> BS03704.complete
GAAGTTATCAGTCGACATGGCAGATTCCAAGGGTGAAGATCTGGCTACGG
CGATCCTGAAGCGCAAGGACCGTCCCAACCGACTGATTGTGGAAGAGGCG
CAGAATGACGACAACTCTGTGGTGTCGCTATCGCAGGCGAAGATGGATGA
GCTGCAGCTCTTCCGTGGCGACACCGTGATTCTGAAGGGTAAGCGCCGAA
AGGAGACGGTGTGCATCGTGCTCTCGGACGACACCTGTCCCGACGAGAAG
ATCCGCATGAACCGCGTGGTGCGCAACAACCTGTGCGTCCATCTTTCAGA
TGTGGTTTCCGTGCAGTCCTGCCCGGACGTCAAGTACGGCAAACGGGTGC
GCATCCTGCCCATCGACGAAAGCACCGAAGGCGTTACCGGCAACCTGTTC
GAGATCTATCTGAAGCCGTACTTCCTAGAGGCCTATCGGCCAATCCACAT
GGGCGACAACTTTATTGTGCGCGCCGCCATGCGTCCTATTGAGTTCAAGG
TGGTGCTGACCGACCCGGAGCCCTACTGCATCGTAGCTCCCGAGACTGTA
ATCTTCTGCGACGGTGATCCAATCAAGCGCGAGGAGGAGGAGGAGTCCCT
AAACGCCGTTGGCTACGATGATATCGGTGGTTGCCGCAAGCAGCTGGCCC
AGATCAAGGAGATGGTTGAGTTGCCTTTGCGGCATCCATCGCTCTTCAAG
GCCATTGGTGTGAAGCCACCGCGTGGTATTCTTATGTACGGTCCCCCGGG
TACCGGTAAGACCCTGATTGCCAGGGCTGTGGCCAACGAGACCGGAGCCT
TTTTCTTCCTGATTAACGGACCGGAGATCATGTCCAAACTGGCCGGAGAG
TCGGAATCGAATCTGCGTAAGGCCTTCGAGGAAGCCGAGAAAAACTCGCC
GGCTATCATCTTCATCGATGAGATCGACGCTATTGCCCCCAAGCGTGACA
AGACCCACGGTGAGGTGGAGCGTCGCATTGTGTCGCAGCTTTTGACCCTG
ATGGATGGCATGAAGAAGAGCTCCCATCTGATCGTTATGGCTGCTACCAA
CAGGCCCAACTCCATTGACCCGGCCCTGCGTCGCTTTGGACGTTTTGATC
GTGAGATTGACATCGGCATTCCAGATGCCACTGGTCGGCTGGAGGTGCTG
CGCATTCACACCAAGAACATGAAGCTGCATGATGATGTTGACCTGGAGCA
GATTGCTGCCGAATCCCACGGACATGTGGGCGCTGATCTGGCTTCACTCT
GCTCTGAGGCTGCCCTTCAGCAAATCCGTGAGAAGATGGACCTCATCGAT
TTGGAAGACGATAAGATCGATGCCGAGGTGCTGGCGTCGCTGGCCGTGAC
AATGGAGAACTTCCGCTACGCTATGACCAAGTCCAGTCCATCGGCGCTGC
GTGAAACTGTTGTTGAGGTGCCCAACACCACCTGGACAGACATCGGCGGT
CTGGAGAGCGTCAAGAAGGAATTGCAGGAGCTGGTGCAATACCCAGTGGA
GCATCCGGACAAGTTCTTGAAGTTTGGCATGCAGCCCAGTCGCGGTGTCC
TTTTCTACGGACCCCCTGGTTGCGGTAAGACGCTGCTGGCCAAGGCCATT
GCCAACGAGTGCCAGGCGAACTTCATCTCAGTCAAGGGTCCCGAGCTGCT
GACCATGTGGTTCGGCGAGTCTGAGGCCAACGTGCGCGACATCTTCGATA
AGGCTCGCTCGGCGGCTCCTTGTGTGCTCTTCTTTGACGAGCTGGACTCG
ATCGCCAAAGCCCGTGGCGGTAATGTCGGCGATGCTGGCGGCGCCGCTGA
TCGTGTGATCAATCAGATCCTTACCGAAATGGATGGCATGGGAGCCAAGA
AGAATGTGTTCATCATCGGAGCCACCAATCGCCCGGACATTATCGATCCG
GCCATCCTCCGTCCGGGCCGTCTGGATCAGTTGATCTATATTCCGCTGCC
CGACGACAAATCGCGTGAGGCTATCCTGAAGGCTAACTTGCGCAAGTCGC
CGCTGGCCAAGGAAGTAGACCTTACCTACATCGCCAAGGTGACGCAGGGC
TTCTCTGGCGCCGATCTGACCGAGATCTGCCAGCGGGCTTGCAAGCTGGC
CATCCGACAGGCCATCGAGGCTGAAATTCGTCGCGAGAAGGAGCGCGCCG
AAAATCAGAACTCCGCGATGGACATGGACGAGGACGATCCAGTGCCGGAG
ATTACCAGCGCCCACTTCGAGGAGGCCATGAAGTTCGCTCGCCGTTCGGT
GTCCGATAATGACATCAGGAAGTACGAGATGTTTGCCCAGACTTTGCAGC
AGTCCCGTGGATTCGGACAGAACTTCAGATTCCCCGGTCAAACCGGCAAC
ACCTCAGGATCTGGTAACAACTTGCCAGTTAACTCGCCCGGCGACAACGG
CGACGATGATCTTTACAGTTAGAAGCTTTCTAGACCAT
BS03704.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RA | 2406 | CG2331-PA | 1..2406 | 17..2422 | 11880 | 99.6 | Plus |
| TER94-RC | 2481 | CG2331-PC | 88..2481 | 29..2422 | 11805 | 99.5 | Plus |
| TER94-RE | 2478 | CG2331-PE | 88..2478 | 29..2422 | 11725 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RA | 3016 | CG2331-RA | 128..2535 | 16..2423 | 11890 | 99.6 | Plus |
| TER94-RC | 3058 | CG2331-RC | 183..2577 | 29..2423 | 11810 | 99.5 | Plus |
| TER94-RD | 3125 | CG2331-RD | 255..2644 | 34..2423 | 11800 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9990657..9992696 | 134..2173 | 10065 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9992763..9992917 | 2174..2328 | 760 | 99.4 | Plus |
| 2R | 25286936 | 2R | 9990470..9990574 | 33..137 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 9992981..9993078 | 2326..2423 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:28:35 has no hits.
BS03704.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:54:51 Download gff for
BS03704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 127..2532 | 17..2422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:41 Download gff for
BS03704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 129..2534 | 17..2422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:45 Download gff for
BS03704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 129..2534 | 17..2422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:45 Download gff for
BS03704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9989287..9989303 | 17..33 | 100 | -> | Plus |
| 2R | 9990471..9990573 | 34..136 | 100 | -> | Plus |
| 2R | 9990660..9992696 | 137..2173 | 99 | -> | Plus |
| 2R | 9992763..9992917 | 2174..2328 | 99 | -> | Plus |
| 2R | 9992984..9993077 | 2329..2422 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:41 Download gff for
BS03704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5876792..5876808 | 17..33 | 100 | -> | Plus |
| arm_2R | 5877976..5878078 | 34..136 | 100 | -> | Plus |
| arm_2R | 5878165..5880201 | 137..2173 | 99 | -> | Plus |
| arm_2R | 5880268..5880422 | 2174..2328 | 99 | -> | Plus |
| arm_2R | 5880489..5880582 | 2329..2422 | 100 | | Plus |
BS03704.pep Sequence
Translation from 16 to 2421
> BS03704.pep
MADSKGEDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFR
GDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQ
SCPDVKYGKRVRILPIDESTEGVTGNLFEIYLKPYFLEAYRPIHMGDNFI
VRAAMRPIEFKVVLTDPEPYCIVAPETVIFCDGDPIKREEEEESLNAVGY
DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTL
IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFI
DEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSI
DPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLHDDVDLEQIAAES
HGHVGADLASLCSEAALQQIREKMDLIDLEDDKIDAEVLASLAVTMENFR
YAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKF
LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG
ESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQ
ILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSR
EAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAI
EAEIRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDI
RKYEMFAQTLQQSRGFGQNFRFPGQTGNTSGSGNNLPVNSPGDNGDDDLY
S*
BS03704.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-PA | 801 | CG2331-PA | 1..801 | 1..801 | 4110 | 100 | Plus |
| TER94-PC | 826 | CG2331-PC | 30..826 | 5..801 | 4083 | 99.9 | Plus |
| TER94-PE | 825 | CG2331-PE | 30..825 | 5..801 | 4066 | 99.7 | Plus |
| TER94-PD | 759 | CG2331-PD | 1..759 | 43..801 | 3907 | 100 | Plus |
| CG5776-PB | 799 | CG5776-PB | 255..766 | 184..703 | 974 | 37.3 | Plus |
