Clone Sequence Records
BS03708.3prime Sequence
963 bp (906 high quality bases) assembled on 2005-12-01
> BS03708.3prime
ATGGTCTAGAAAGCTTCTATAAATACTCGGCTAAAATCTGTCTGAGATCC
GAGTTGTAAACACTTTCCAGGGCCGCCAACACTCGATCGTCAGCAAGTAG
CTCCATTAGCCTTCTGTCCTCCTTGACTGCCTCGAAAGTGGGATACATGA
GCTCGCTGGTGACATCGGTTACTGCCGGCTTGTTCATGATGCTAAGAATC
TTCTTCTGCAGCTCGATCTCTGGATCGGGAGCTTTTAGCTTGGCCAGAGC
ATTGGCCTCGCCCACCTCTCGCTTCAGTTGCTCCTCGCGTTCGCCTTCGA
GGTACTTAAGAATCACCTCGTACTGCGACGCGGTCAATGGATGATTGTCT
GCCAGCCTTTCCAGCAGCCCCTGCATTTCCTGGGGATGTCGTCGCTGTCC
CTTGTGTATGGATGTTGACGGCGGTAAGACGACAGCGTCGCGCTGTTTTT
TGAGCCTAAAATCGGTGGAGATCAGGGTGATGGCGTCCTCCAGCGGCATG
TTGCGATGCTCAGCGGGTACGCCATACAAAATGTTTACTGTGATGCTGTT
GTGTTCCTCGTGCTGCGGCGTGACCAATACCGCATACAAGCAGCCGCGCG
AAGAGATGTTGGCCAGGACCTTGCCTAGCAAGACGTCCTCGTTGGGAAAG
AGTACATCCACGCGCAGACTGGAATTCTTTAGCCGCTCCTCAATGTATTC
TGCGTATTTGGTATTCTCGCGATTTTGGACTATGATCTCGCAATCATTGA
TGAGGGGTTGACCTGCTGCCGCTGCCGCCGCTGACATCACAAGTCCACCC
TGAACTGTCACCTGGCCTCCTTGATTTGAATTTCTTTTGGCGATAGCATT
GGCCGCCTTCGATTTAATGCTGGCGTTGCGTACGGTGAGCATGTTTTGCT
TAAAAGTGGACTTGTGCAGGGCGGAGGCGGCTTTTATGGCCAGCTCCTCC
GTTTCAAACTGCA
BS03708.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8614-PA | 1116 | Neos-RA | 170..1116 | 963..17 | 4685 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Neos-RB | 1260 | CG8614-RB | 228..1175 | 963..16 | 4710 | 99.8 | Minus |
Neos-RA | 1449 | CG8614-RA | 417..1364 | 963..16 | 4710 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7242360..7243054 | 710..16 | 3475 | 100 | Minus |
3L | 28110227 | 3L | 7242044..7242296 | 963..711 | 1235 | 99.2 | Minus |
Blast to na_te.dros performed 2015-02-10 22:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 1768..1832 | 891..826 | 111 | 65.2 | Minus |
BS03708.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:41 Download gff for
BS03708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neos-PA | 171..1116 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:44 Download gff for
BS03708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8614-PA | 171..1116 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:30:42 Download gff for
BS03708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neos-RA | 418..1366 | 12..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:26 Download gff for
BS03708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neos-RA | 418..1366 | 12..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:26 Download gff for
BS03708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7242045..7242296 | 711..962 | 99 | -> | Minus |
3L | 7242360..7243056 | 12..710 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:30:42 Download gff for
BS03708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7235145..7235396 | 711..962 | 99 | -> | Minus |
arm_3L | 7235460..7236156 | 12..710 | 99 | | Minus |
BS03708.5prime Sequence
879 bp (795 high quality bases) assembled on 2005-11-29
> BS03708.5prime
GAAGTTATCAGTCGACATGTCTGATCCAGGAAGCGCCGGCTACAACATAA
CCAAGGATCCGGCCCTGGCAAAGAGTCGAATCTTCTTGGGCAACCTGCCG
GTTTGCACGCGCGAGGAGCTGGTGAGCATTTGCCAGCCATATGGCAAAGT
GCTCGGTTCGATGGTCCAGAAGAACTACGGATTCGTGCAGTTTGAAACGG
AGGAGCTGGCCAATAAAGCCGCCTCCGCCCTGCACAAGTCCACTTTTAAG
CAAAACATGCTCACCGTACGCAACGCCAGCATTAAATCGAAGGCGGCCAA
TGCTATCGCCAAAAGAAATTCAAATCAAGGAGGCCAGGTGACAGTTCAGG
GTGGACTTGTGATGTCAGCGGCGGCAGCGGCAGCAGGTCAACCCCTCATC
AATGATTGCGAGATCATAGTCCAAAATCGCGAGAATACCAAATACGCAGA
ATACATTGAGGAGCGGCTAAAGAATTCCAGTCTGCGCGTGGATGTACTCT
TTCCCAACGAGGACGTCTTGCTAGGCAAGGTCCTGGCCAACATCTCTTCG
CGCGGCTGCTTGTATGCGGTATTGGTCACGCCGCAGCACGAGGAACACAA
CAGCATCACAGTAAACATTTTGTATGGCGTACCCGCTGAGCATCGCAACA
TGCCGCTGGAGGACGCCATCACCCTGATCTCCACCGATTTTAGGCTCAAA
AAACAGCGCGACGCTGTCGTCTTACCGCCGTCAACATCCATACACAAGGG
ACAGCGACGACATCCCCAGGAAATGCAGGGGCTGCTGGAAAGGCTGGCAG
ACAATCATCCATTGACCGCGTCGCAGTACGAGGTGATTCTTAAGTACCTC
GAAGGCGAACGCGAGGAGCAACTGAAGCG
BS03708.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8614-PA | 1116 | Neos-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Neos-RB | 1260 | CG8614-RB | 59..921 | 17..879 | 4315 | 100 | Plus |
Neos-RA | 1449 | CG8614-RA | 248..1110 | 17..879 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7242360..7242800 | 439..879 | 2205 | 100 | Plus |
3L | 28110227 | 3L | 7241875..7242296 | 17..438 | 2110 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 1768..1832 | 258..323 | 111 | 65.2 | Plus |
BS03708.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:42 Download gff for
BS03708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neos-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:45 Download gff for
BS03708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8614-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:51:48 Download gff for
BS03708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neos-RA | 245..1110 | 12..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:39 Download gff for
BS03708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neos-RA | 245..1110 | 12..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:39 Download gff for
BS03708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7241872..7242296 | 12..438 | 99 | -> | Plus |
3L | 7242360..7242800 | 439..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:51:48 Download gff for
BS03708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7234972..7235396 | 12..438 | 99 | -> | Plus |
arm_3L | 7235460..7235900 | 439..879 | 100 | | Plus |
BS03708.complete Sequence
1148 bp (1148 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634759
> BS03708.complete
GAAGTTATCAGTCGACATGTCTGATCCAGGAAGCGCCGGCTACAACATAA
CCAAGGATCCGGCCCTGGCAAAGAGTCGAATCTTCTTGGGCAACCTGCCG
GTTTGCACGCGCGAGGAGCTGGTGAGCATTTGCCAGCCATATGGCAAAGT
GCTCGGTTCGATGGTCCAGAAGAACTACGGATTCGTGCAGTTTGAAACGG
AGGAGCTGGCCAATAAAGCCGCCTCCGCCCTGCACAAGTCCACTTTTAAG
CAAAACATGCTCACCGTACGCAACGCCAGCATTAAATCGAAGGCGGCCAA
TGCTATCGCCAAAAGAAATTCAAATCAAGGAGGCCAGGTGACAGTTCAGG
GTGGACTTGTGATGTCAGCGGCGGCAGCGGCAGCAGGTCAACCCCTCATC
AATGATTGCGAGATCATAGTCCAAAATCGCGAGAATACCAAATACGCAGA
ATACATTGAGGAGCGGCTAAAGAATTCCAGTCTGCGCGTGGATGTACTCT
TTCCCAACGAGGACGTCTTGCTAGGCAAGGTCCTGGCCAACATCTCTTCG
CGCGGCTGCTTGTATGCGGTATTGGTCACGCCGCAGCACGAGGAACACAA
CAGCATCACAGTAAACATTTTGTATGGCGTACCCGCTGAGCATCGCAACA
TGCCGCTGGAGGACGCCATCACCCTGATCTCCACCGATTTTAGGCTCAAA
AAACAGCGCGACGCTGTCGTCTTACCGCCGTCAACATCCATACACAAGGG
ACAGCGACGACATCCCCAGGAAATGCAGGGGCTGCTGGAAAGGCTGGCAG
ACAATCATCCATTGACCGCGTCGCAGTACGAGGTGATTCTTAAGTACCTC
GAAGGCGAACGCGAGGAGCAACTGAAGCGAGAGGTGGGCGAGGCCAATGC
TCTGGCCAAGCTAAAAGCTCCCGATCCAGAGATCGAGCTGCAGAAGAAGA
TTCTTAGCATCATGAACAAGCCGGCAGTAACCGATGTCACCAGCGAGCTC
ATGTATCCCACTTTCGAGGCAGTCAAGGAGGACAGAAGGCTAATGGAGCT
ACTTGCTGACGATCGAGTGTTGGCGGCCCTGGAAAGTGTTTACAACTCGG
ATCTCAGACAGATTTTAGCCGAGTATTTATAGAAGCTTTCTAGACCAT
BS03708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Neos-RA | 1116 | CG8614-PA | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Neos-RB | 1116 | CG8614-PB | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Neos-RB | 1260 | CG8614-RB | 59..1175 | 17..1133 | 5585 | 100 | Plus |
Neos-RA | 1449 | CG8614-RA | 248..1364 | 17..1133 | 5585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7242360..7243054 | 439..1133 | 3475 | 100 | Plus |
3L | 28110227 | 3L | 7241875..7242296 | 17..438 | 2110 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 1768..1832 | 258..323 | 111 | 65.2 | Plus |
BS03708.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:28 Download gff for
BS03708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neos-RA | 1..1116 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:33 Download gff for
BS03708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neos-RA | 181..1302 | 12..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:09 Download gff for
BS03708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neos-RA | 248..1363 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:28 Download gff for
BS03708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neos-RA | 181..1302 | 12..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:37 Download gff for
BS03708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neos-RA | 248..1363 | 17..1132 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:37 Download gff for
BS03708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7241875..7242296 | 17..438 | 100 | -> | Plus |
3L | 7242360..7243053 | 439..1132 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:09 Download gff for
BS03708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7234975..7235396 | 17..438 | 100 | -> | Plus |
arm_3L | 7235460..7236153 | 439..1132 | 100 | | Plus |
BS03708.pep Sequence
Translation from 16 to 1131
> BS03708.pep
MSDPGSAGYNITKDPALAKSRIFLGNLPVCTREELVSICQPYGKVLGSMV
QKNYGFVQFETEELANKAASALHKSTFKQNMLTVRNASIKSKAANAIAKR
NSNQGGQVTVQGGLVMSAAAAAAGQPLINDCEIIVQNRENTKYAEYIEER
LKNSSLRVDVLFPNEDVLLGKVLANISSRGCLYAVLVTPQHEEHNSITVN
ILYGVPAEHRNMPLEDAITLISTDFRLKKQRDAVVLPPSTSIHKGQRRHP
QEMQGLLERLADNHPLTASQYEVILKYLEGEREEQLKREVGEANALAKLK
APDPEIELQKKILSIMNKPAVTDVTSELMYPTFEAVKEDRRLMELLADDR
VLAALESVYNSDLRQILAEYL*
BS03708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Neos-PB | 371 | CG8614-PB | 1..371 | 1..371 | 1862 | 100 | Plus |
Neos-PA | 371 | CG8614-PA | 1..371 | 1..371 | 1862 | 100 | Plus |
fz3-PB | 646 | CG16785-PB | 1..95 | 1..95 | 230 | 49.5 | Plus |
CG14628-PA | 141 | CG14628-PA | 1..97 | 1..97 | 217 | 45.4 | Plus |
CG18823-PA | 106 | CG18823-PA | 9..82 | 15..88 | 188 | 48.6 | Plus |