Clone BS03708 Report

Search the DGRC for BS03708

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:37
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptNeos-RA
Protein status:BS03708.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03708.3prime Sequence

963 bp (906 high quality bases) assembled on 2005-12-01

> BS03708.3prime
ATGGTCTAGAAAGCTTCTATAAATACTCGGCTAAAATCTGTCTGAGATCC
GAGTTGTAAACACTTTCCAGGGCCGCCAACACTCGATCGTCAGCAAGTAG
CTCCATTAGCCTTCTGTCCTCCTTGACTGCCTCGAAAGTGGGATACATGA
GCTCGCTGGTGACATCGGTTACTGCCGGCTTGTTCATGATGCTAAGAATC
TTCTTCTGCAGCTCGATCTCTGGATCGGGAGCTTTTAGCTTGGCCAGAGC
ATTGGCCTCGCCCACCTCTCGCTTCAGTTGCTCCTCGCGTTCGCCTTCGA
GGTACTTAAGAATCACCTCGTACTGCGACGCGGTCAATGGATGATTGTCT
GCCAGCCTTTCCAGCAGCCCCTGCATTTCCTGGGGATGTCGTCGCTGTCC
CTTGTGTATGGATGTTGACGGCGGTAAGACGACAGCGTCGCGCTGTTTTT
TGAGCCTAAAATCGGTGGAGATCAGGGTGATGGCGTCCTCCAGCGGCATG
TTGCGATGCTCAGCGGGTACGCCATACAAAATGTTTACTGTGATGCTGTT
GTGTTCCTCGTGCTGCGGCGTGACCAATACCGCATACAAGCAGCCGCGCG
AAGAGATGTTGGCCAGGACCTTGCCTAGCAAGACGTCCTCGTTGGGAAAG
AGTACATCCACGCGCAGACTGGAATTCTTTAGCCGCTCCTCAATGTATTC
TGCGTATTTGGTATTCTCGCGATTTTGGACTATGATCTCGCAATCATTGA
TGAGGGGTTGACCTGCTGCCGCTGCCGCCGCTGACATCACAAGTCCACCC
TGAACTGTCACCTGGCCTCCTTGATTTGAATTTCTTTTGGCGATAGCATT
GGCCGCCTTCGATTTAATGCTGGCGTTGCGTACGGTGAGCATGTTTTGCT
TAAAAGTGGACTTGTGCAGGGCGGAGGCGGCTTTTATGGCCAGCTCCTCC
GTTTCAAACTGCA

BS03708.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8614-PA 1116 Neos-RA 170..1116 963..17 4685 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-RB 1260 CG8614-RB 228..1175 963..16 4710 99.8 Minus
Neos-RA 1449 CG8614-RA 417..1364 963..16 4710 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7242360..7243054 710..16 3475 100 Minus
3L 28110227 3L 7242044..7242296 963..711 1235 99.2 Minus
Blast to na_te.dros performed 2015-02-10 22:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 1768..1832 891..826 111 65.2 Minus

BS03708.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:41 Download gff for BS03708.3prime
Subject Subject Range Query Range Percent Splice Strand
Neos-PA 171..1116 17..962 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:44 Download gff for BS03708.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8614-PA 171..1116 17..962 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:30:42 Download gff for BS03708.3prime
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 418..1366 12..962 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:26 Download gff for BS03708.3prime
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 418..1366 12..962 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:26 Download gff for BS03708.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7242045..7242296 711..962 99 -> Minus
3L 7242360..7243056 12..710 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:30:42 Download gff for BS03708.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7235145..7235396 711..962 99 -> Minus
arm_3L 7235460..7236156 12..710 99   Minus

BS03708.5prime Sequence

879 bp (795 high quality bases) assembled on 2005-11-29

> BS03708.5prime
GAAGTTATCAGTCGACATGTCTGATCCAGGAAGCGCCGGCTACAACATAA
CCAAGGATCCGGCCCTGGCAAAGAGTCGAATCTTCTTGGGCAACCTGCCG
GTTTGCACGCGCGAGGAGCTGGTGAGCATTTGCCAGCCATATGGCAAAGT
GCTCGGTTCGATGGTCCAGAAGAACTACGGATTCGTGCAGTTTGAAACGG
AGGAGCTGGCCAATAAAGCCGCCTCCGCCCTGCACAAGTCCACTTTTAAG
CAAAACATGCTCACCGTACGCAACGCCAGCATTAAATCGAAGGCGGCCAA
TGCTATCGCCAAAAGAAATTCAAATCAAGGAGGCCAGGTGACAGTTCAGG
GTGGACTTGTGATGTCAGCGGCGGCAGCGGCAGCAGGTCAACCCCTCATC
AATGATTGCGAGATCATAGTCCAAAATCGCGAGAATACCAAATACGCAGA
ATACATTGAGGAGCGGCTAAAGAATTCCAGTCTGCGCGTGGATGTACTCT
TTCCCAACGAGGACGTCTTGCTAGGCAAGGTCCTGGCCAACATCTCTTCG
CGCGGCTGCTTGTATGCGGTATTGGTCACGCCGCAGCACGAGGAACACAA
CAGCATCACAGTAAACATTTTGTATGGCGTACCCGCTGAGCATCGCAACA
TGCCGCTGGAGGACGCCATCACCCTGATCTCCACCGATTTTAGGCTCAAA
AAACAGCGCGACGCTGTCGTCTTACCGCCGTCAACATCCATACACAAGGG
ACAGCGACGACATCCCCAGGAAATGCAGGGGCTGCTGGAAAGGCTGGCAG
ACAATCATCCATTGACCGCGTCGCAGTACGAGGTGATTCTTAAGTACCTC
GAAGGCGAACGCGAGGAGCAACTGAAGCG

BS03708.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8614-PA 1116 Neos-RA 1..863 17..879 4315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-RB 1260 CG8614-RB 59..921 17..879 4315 100 Plus
Neos-RA 1449 CG8614-RA 248..1110 17..879 4315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7242360..7242800 439..879 2205 100 Plus
3L 28110227 3L 7241875..7242296 17..438 2110 100 Plus
Blast to na_te.dros performed 2015-02-11 17:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 1768..1832 258..323 111 65.2 Plus

BS03708.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:42 Download gff for BS03708.5prime
Subject Subject Range Query Range Percent Splice Strand
Neos-PA 1..863 17..879 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:45 Download gff for BS03708.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8614-PA 1..863 17..879 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:51:48 Download gff for BS03708.5prime
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 245..1110 12..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:39 Download gff for BS03708.5prime
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 245..1110 12..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:39 Download gff for BS03708.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7241872..7242296 12..438 99 -> Plus
3L 7242360..7242800 439..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:51:48 Download gff for BS03708.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7234972..7235396 12..438 99 -> Plus
arm_3L 7235460..7235900 439..879 100   Plus

BS03708.complete Sequence

1148 bp (1148 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634759

> BS03708.complete
GAAGTTATCAGTCGACATGTCTGATCCAGGAAGCGCCGGCTACAACATAA
CCAAGGATCCGGCCCTGGCAAAGAGTCGAATCTTCTTGGGCAACCTGCCG
GTTTGCACGCGCGAGGAGCTGGTGAGCATTTGCCAGCCATATGGCAAAGT
GCTCGGTTCGATGGTCCAGAAGAACTACGGATTCGTGCAGTTTGAAACGG
AGGAGCTGGCCAATAAAGCCGCCTCCGCCCTGCACAAGTCCACTTTTAAG
CAAAACATGCTCACCGTACGCAACGCCAGCATTAAATCGAAGGCGGCCAA
TGCTATCGCCAAAAGAAATTCAAATCAAGGAGGCCAGGTGACAGTTCAGG
GTGGACTTGTGATGTCAGCGGCGGCAGCGGCAGCAGGTCAACCCCTCATC
AATGATTGCGAGATCATAGTCCAAAATCGCGAGAATACCAAATACGCAGA
ATACATTGAGGAGCGGCTAAAGAATTCCAGTCTGCGCGTGGATGTACTCT
TTCCCAACGAGGACGTCTTGCTAGGCAAGGTCCTGGCCAACATCTCTTCG
CGCGGCTGCTTGTATGCGGTATTGGTCACGCCGCAGCACGAGGAACACAA
CAGCATCACAGTAAACATTTTGTATGGCGTACCCGCTGAGCATCGCAACA
TGCCGCTGGAGGACGCCATCACCCTGATCTCCACCGATTTTAGGCTCAAA
AAACAGCGCGACGCTGTCGTCTTACCGCCGTCAACATCCATACACAAGGG
ACAGCGACGACATCCCCAGGAAATGCAGGGGCTGCTGGAAAGGCTGGCAG
ACAATCATCCATTGACCGCGTCGCAGTACGAGGTGATTCTTAAGTACCTC
GAAGGCGAACGCGAGGAGCAACTGAAGCGAGAGGTGGGCGAGGCCAATGC
TCTGGCCAAGCTAAAAGCTCCCGATCCAGAGATCGAGCTGCAGAAGAAGA
TTCTTAGCATCATGAACAAGCCGGCAGTAACCGATGTCACCAGCGAGCTC
ATGTATCCCACTTTCGAGGCAGTCAAGGAGGACAGAAGGCTAATGGAGCT
ACTTGCTGACGATCGAGTGTTGGCGGCCCTGGAAAGTGTTTACAACTCGG
ATCTCAGACAGATTTTAGCCGAGTATTTATAGAAGCTTTCTAGACCAT

BS03708.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-RA 1116 CG8614-PA 1..1116 17..1132 5580 100 Plus
Neos-RB 1116 CG8614-PB 1..1116 17..1132 5580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-RB 1260 CG8614-RB 59..1175 17..1133 5585 100 Plus
Neos-RA 1449 CG8614-RA 248..1364 17..1133 5585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7242360..7243054 439..1133 3475 100 Plus
3L 28110227 3L 7241875..7242296 17..438 2110 100 Plus
Blast to na_te.dros performed 2014-11-27 16:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 1768..1832 258..323 111 65.2 Plus

BS03708.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:28 Download gff for BS03708.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 1..1116 17..1132 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:33 Download gff for BS03708.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 181..1302 12..1137 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:09 Download gff for BS03708.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 248..1363 17..1132 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:28 Download gff for BS03708.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 181..1302 12..1137 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:37 Download gff for BS03708.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 248..1363 17..1132 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:37 Download gff for BS03708.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7241875..7242296 17..438 100 -> Plus
3L 7242360..7243053 439..1132 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:09 Download gff for BS03708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7234975..7235396 17..438 100 -> Plus
arm_3L 7235460..7236153 439..1132 100   Plus

BS03708.pep Sequence

Translation from 16 to 1131

> BS03708.pep
MSDPGSAGYNITKDPALAKSRIFLGNLPVCTREELVSICQPYGKVLGSMV
QKNYGFVQFETEELANKAASALHKSTFKQNMLTVRNASIKSKAANAIAKR
NSNQGGQVTVQGGLVMSAAAAAAGQPLINDCEIIVQNRENTKYAEYIEER
LKNSSLRVDVLFPNEDVLLGKVLANISSRGCLYAVLVTPQHEEHNSITVN
ILYGVPAEHRNMPLEDAITLISTDFRLKKQRDAVVLPPSTSIHKGQRRHP
QEMQGLLERLADNHPLTASQYEVILKYLEGEREEQLKREVGEANALAKLK
APDPEIELQKKILSIMNKPAVTDVTSELMYPTFEAVKEDRRLMELLADDR
VLAALESVYNSDLRQILAEYL*

BS03708.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-PB 371 CG8614-PB 1..371 1..371 1862 100 Plus
Neos-PA 371 CG8614-PA 1..371 1..371 1862 100 Plus
fz3-PB 646 CG16785-PB 1..95 1..95 230 49.5 Plus
CG14628-PA 141 CG14628-PA 1..97 1..97 217 45.4 Plus
CG18823-PA 106 CG18823-PA 9..82 15..88 188 48.6 Plus