Clone Sequence Records
BS03710.3prime Sequence
933 bp (827 high quality bases) assembled on 2005-12-01
> BS03710.3prime
ATGGTCTAGAAAGCTTTCAGTTGGAGAGCTGCGAGTTGGACAGGTTCGAG
CTATGCTCCGAATCGGAGGAAGGACCTGGATGCGATGGCGCCTGTTGTTG
GTGCTGTTGTAGCGCCTGCTGCTGCTGGGAGTGGGAATGCGGAAGGTGCG
AGGGCTGCTTCGACTGGATGGCCGTACCCGACTCGTAGTTGATGCGGATC
CATTGGCCCTCCGTGTTCTCCTTCCACAATGTGACATTGTTGTCCCCACC
GGTGACGGCAAGAATGTTGCCGGTGGTTGACCACGAGATGCTCCACACGG
CATCGTCGAATGTGTGCAGCACAGTCGAGGTCCACTCGGATAGATCTGCG
TTGCTGCTCCACACAATCACATGGCGATCCTGCGAAGCCGTGGCAATCTG
CGAGCGGGGCAATCCGATCGACGGCGCCCAGGCCACGTCGCGCACCCAAT
CCGAGTGCGCCTCCAGTCGGTGCTCCTCCACCCAGCGGTCGTTGTCCTCC
CGCCAAATCTTCACTAAATTATCGCAACCACCGCTCACTAGGCGCTTTAC
GGCCGCCGAACGCGAAGTTACGCGCTGGTCAAATGCTGGATCTGGTGCCT
GGGCGGGGCACCACGAGATGGCATTCACTCCGATCGTGTGCGCATTCGGT
ATCTTCTTGGCATCCCACACACCGTACTCCGTGTTGCAGGTGAGCACCGA
TACCGAGCCATCCGAACTGGCGCAGGCCAACACCAATCCGTACTCGGATG
GCGCGAAGTCCACCGAGTTTACCGAGGAGTCGTGGTTGCTGTATTCGTAG
AGCTTAGTCCAATCCCGGGGCGTTGTGGACTTCCAGACGATCACCTTGCG
GTCGTANGAGCACGATGCCAGTATGTTGCCAAACTTGGGATGTGCCCAGG
CCACCTGCCACACTGGTCCCTGGTGTCCCTTGA
BS03710.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6773-PA | 1071 | sec13-RA | 155..1071 | 933..17 | 4566 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec13-RB | 1809 | CG6773-RB | 543..1459 | 933..17 | 4574 | 99.9 | Minus |
Sec13-RA | 1343 | CG6773-RA | 258..1174 | 933..17 | 4574 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23357398..23358181 | 800..17 | 3920 | 100 | Minus |
3R | 32079331 | 3R | 23356820..23356952 | 933..801 | 654 | 99.2 | Minus |
Blast to na_te.dros performed 2015-02-06 15:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6803 | 159..79 | 135 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6815 | 166..88 | 134 | 63.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2384 | 166..92 | 132 | 64 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1043..1123 | 165..86 | 132 | 64.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2665 | 161..93 | 129 | 65.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6782 | 127..79 | 128 | 73.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2541 | 127..85 | 125 | 76.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2396 | 127..77 | 120 | 70.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6843 | 161..93 | 113 | 65.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6836 | 206..88 | 112 | 58.1 | Minus |
BS03710.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:44 Download gff for
BS03710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sec13-PA | 156..1071 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:48 Download gff for
BS03710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6773-PA | 156..1071 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:12:56 Download gff for
BS03710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 259..1176 | 13..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:54:16 Download gff for
BS03710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 259..1176 | 13..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:54:16 Download gff for
BS03710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23356821..23356952 | 801..932 | 99 | -> | Minus |
3R | 23357398..23358183 | 13..800 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:12:56 Download gff for
BS03710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19182543..19182674 | 801..932 | 99 | -> | Minus |
arm_3R | 19183120..19183905 | 13..800 | 99 | | Minus |
BS03710.5prime Sequence
823 bp (754 high quality bases) assembled on 2005-11-29
> BS03710.5prime
GAAGTTATCAGTCGACATGGTGAGCCTGCTGCAAGAGATCGACACCGAGC
ACGAGGACATGGTCCACCACGCAGCGCTGGACTTCTACGGCCTACTGTTG
GCCACCTGCTCCTCGGACGGCAGCGTCCGCATCTTTCACTCGCGCAAAAA
CAATAAGGCGCTCGCCGAGCTCAAGGGACACCAGGGACCAGTGTGGCAGG
TGGCCTGGGCACATCCCAAGTTTGGCAACATACTGGCATCGTGCTCCTAC
GACCGCAAGGTGATCGTCTGGAAGTCCACAACGCCCCGGGATTGGACTAA
GCTCTACGAATACAGCAACCACGACTCCTCGGTAAACTCGGTGGACTTCG
CGCCATCCGAGTACGGATTGGTGTTGGCCTGCGCCAGTTCGGATGGCTCG
GTATCGGTGCTCACCTGCAACACGGAGTACGGTGTGTGGGATGCCAAGAA
GATACCGAATGCGCACACGATCGGAGTGAATGCCATCTCGTGGTGCCCCG
CCCAGGCACCAGATCCAGCATTTGACCAGCGCGTAACTTCGCGTTCGGCG
GCCGTAAAGCGCCTAGTGAGCGGTGGTTGCGATAATTTAGTGAAGATTTG
GCGGGAGGACAACGACCGCTGGGTGGAGGAGCACCGACTGGAGGCGCACT
CGGATTGGGTGCGCGACGTGGCCTGGGCGCCGTCGATCGGATTGCCCCGC
TCGCAGATTGCCACGGCTTCGCAGGATCGCCATGTGATTGTGTGGAGCAG
CAACGCAAATCTATCCGAGTGGACCTCGACTGTGCTGCACACATTCGACG
ATGCCGTGTGGAGCATCTCGTGG
BS03710.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6773-PA | 1071 | sec13-RA | 1..807 | 17..823 | 4010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec13-RB | 1809 | CG6773-RB | 389..1195 | 17..823 | 4020 | 99.9 | Plus |
Sec13-RA | 1343 | CG6773-RA | 104..910 | 17..823 | 4020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23357398..23357917 | 304..823 | 2585 | 99.8 | Plus |
3R | 32079331 | 3R | 23356666..23356952 | 17..303 | 1435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:24:39 has no hits.
BS03710.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:45 Download gff for
BS03710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sec13-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:49 Download gff for
BS03710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6773-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:10:59 Download gff for
BS03710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 93..910 | 5..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:42 Download gff for
BS03710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 93..910 | 5..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:42 Download gff for
BS03710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23356655..23356952 | 5..303 | 98 | -> | Plus |
3R | 23357398..23357917 | 304..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:10:59 Download gff for
BS03710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19182377..19182674 | 5..303 | 98 | -> | Plus |
arm_3R | 19183120..19183639 | 304..823 | 99 | | Plus |
BS03710.complete Sequence
1103 bp (1103 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634760
> BS03710.complete
GAAGTTATCAGTCGACATGGTGAGCCTGCTGCAAGAGATCGACACCGAGC
ACGAGGACATGGTCCACCACGCAGCGCTGGACTTCTACGGCCTACTGTTG
GCCACCTGCTCCTCGGACGGCAGCGTCCGCATCTTTCACTCGCGCAAAAA
CAATAAGGCGCTCGCCGAGCTCAAGGGACACCAGGGACCAGTGTGGCAGG
TGGCCTGGGCACATCCCAAGTTTGGCAACATACTGGCATCGTGCTCCTAC
GACCGCAAGGTGATCGTCTGGAAGTCCACAACGCCCCGGGATTGGACTAA
GCTCTACGAATACAGCAACCACGACTCCTCGGTAAACTCGGTGGACTTCG
CGCCATCCGAGTACGGATTGGTGTTGGCCTGCGCCAGTTCGGATGGCTCG
GTATCGGTGCTCACCTGCAACACGGAGTACGGTGTGTGGGATGCCAAGAA
GATACCGAATGCGCACACGATCGGAGTGAATGCCATCTCGTGGTGCCCCG
CCCAGGCACCAGATCCAGCATTTGACCAGCGCGTAACTTCGCGTTCGGCG
GCCGTAAAGCGCCTAGTGAGCGGTGGTTGCGATAATTTAGTGAAGATTTG
GCGGGAGGACAACGACCGCTGGGTGGAGGAGCACCGACTGGAGGCGCACT
CGGATTGGGTGCGCGACGTGGCCTGGGCGCCGTCGATCGGATTGCCCCGC
TCGCAGATTGCCACGGCTTCGCAGGATCGCCATGTGATTGTGTGGAGCAG
CAACGCAGATCTATCCGAGTGGACCTCGACTGTGCTGCACACATTCGACG
ATGCCGTGTGGAGCATCTCGTGGTCAACCACCGGCAACATTCTTGCCGTC
ACCGGTGGGGACAACAATGTCACATTGTGGAAGGAGAACACGGAGGGCCA
ATGGATCCGCATCAACTACGAGTCGGGTACGGCCATCCAGTCGAAGCAGC
CCTCGCACCTTCCGCATTCCCACTCCCAGCAGCAGCAGGCGCTACAACAG
CACCAACAACAGGCGCCATCGCATCCAGGTCCTTCCTCCGATTCGGAGCA
TAGCTCGAACCTGTCCAACTCGCAGCTCTCCAACTGAAAGCTTTCTAGAC
CAT
BS03710.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec13-RB | 1071 | CG6773-PB | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Sec13-RA | 1071 | CG6773-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec13-RB | 1809 | CG6773-RB | 389..1459 | 17..1087 | 5355 | 100 | Plus |
Sec13-RA | 1343 | CG6773-RA | 104..1174 | 17..1087 | 5355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23357398..23358181 | 304..1087 | 3920 | 100 | Plus |
3R | 32079331 | 3R | 23356666..23356952 | 17..303 | 1435 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6803 | 945..1025 | 135 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6815 | 938..1016 | 134 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2384 | 938..1012 | 132 | 64 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1043..1123 | 939..1018 | 132 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2665 | 943..1011 | 129 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6782 | 977..1025 | 128 | 73.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2541 | 977..1019 | 125 | 76.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2396 | 977..1027 | 120 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6843 | 943..1011 | 113 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6836 | 898..1016 | 112 | 58.1 | Plus |
BS03710.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:08 Download gff for
BS03710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sec13-RA | 1..1071 | 17..1087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:02 Download gff for
BS03710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sec13-RA | 88..1171 | 5..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:06 Download gff for
BS03710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 104..1173 | 17..1086 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:08 Download gff for
BS03710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sec13-RA | 88..1171 | 5..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:27 Download gff for
BS03710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 104..1173 | 17..1086 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:27 Download gff for
BS03710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23356666..23356952 | 17..303 | 100 | -> | Plus |
3R | 23357398..23358180 | 304..1086 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:06 Download gff for
BS03710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19182388..19182674 | 17..303 | 100 | -> | Plus |
arm_3R | 19183120..19183902 | 304..1086 | 100 | | Plus |
BS03710.pep Sequence
Translation from 16 to 1086
> BS03710.pep
MVSLLQEIDTEHEDMVHHAALDFYGLLLATCSSDGSVRIFHSRKNNKALA
ELKGHQGPVWQVAWAHPKFGNILASCSYDRKVIVWKSTTPRDWTKLYEYS
NHDSSVNSVDFAPSEYGLVLACASSDGSVSVLTCNTEYGVWDAKKIPNAH
TIGVNAISWCPAQAPDPAFDQRVTSRSAAVKRLVSGGCDNLVKIWREDND
RWVEEHRLEAHSDWVRDVAWAPSIGLPRSQIATASQDRHVIVWSSNADLS
EWTSTVLHTFDDAVWSISWSTTGNILAVTGGDNNVTLWKENTEGQWIRIN
YESGTAIQSKQPSHLPHSHSQQQQALQQHQQQAPSHPGPSSDSEHSSNLS
NSQLSN*
BS03710.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec13-PB | 356 | CG6773-PB | 1..356 | 1..356 | 1920 | 100 | Plus |
Sec13-PA | 356 | CG6773-PA | 1..356 | 1..356 | 1920 | 100 | Plus |
Nup44A-PA | 354 | CG8722-PA | 4..307 | 5..296 | 357 | 27.7 | Plus |
Nup44A-PC | 354 | CG8722-PC | 4..307 | 5..296 | 357 | 27.7 | Plus |
Nup44A-PB | 354 | CG8722-PB | 4..307 | 5..296 | 357 | 27.7 | Plus |