Clone BS03710 Report

Search the DGRC for BS03710

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:37
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptSec13-RA
Protein status:BS03710.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03710.3prime Sequence

933 bp (827 high quality bases) assembled on 2005-12-01

> BS03710.3prime
ATGGTCTAGAAAGCTTTCAGTTGGAGAGCTGCGAGTTGGACAGGTTCGAG
CTATGCTCCGAATCGGAGGAAGGACCTGGATGCGATGGCGCCTGTTGTTG
GTGCTGTTGTAGCGCCTGCTGCTGCTGGGAGTGGGAATGCGGAAGGTGCG
AGGGCTGCTTCGACTGGATGGCCGTACCCGACTCGTAGTTGATGCGGATC
CATTGGCCCTCCGTGTTCTCCTTCCACAATGTGACATTGTTGTCCCCACC
GGTGACGGCAAGAATGTTGCCGGTGGTTGACCACGAGATGCTCCACACGG
CATCGTCGAATGTGTGCAGCACAGTCGAGGTCCACTCGGATAGATCTGCG
TTGCTGCTCCACACAATCACATGGCGATCCTGCGAAGCCGTGGCAATCTG
CGAGCGGGGCAATCCGATCGACGGCGCCCAGGCCACGTCGCGCACCCAAT
CCGAGTGCGCCTCCAGTCGGTGCTCCTCCACCCAGCGGTCGTTGTCCTCC
CGCCAAATCTTCACTAAATTATCGCAACCACCGCTCACTAGGCGCTTTAC
GGCCGCCGAACGCGAAGTTACGCGCTGGTCAAATGCTGGATCTGGTGCCT
GGGCGGGGCACCACGAGATGGCATTCACTCCGATCGTGTGCGCATTCGGT
ATCTTCTTGGCATCCCACACACCGTACTCCGTGTTGCAGGTGAGCACCGA
TACCGAGCCATCCGAACTGGCGCAGGCCAACACCAATCCGTACTCGGATG
GCGCGAAGTCCACCGAGTTTACCGAGGAGTCGTGGTTGCTGTATTCGTAG
AGCTTAGTCCAATCCCGGGGCGTTGTGGACTTCCAGACGATCACCTTGCG
GTCGTANGAGCACGATGCCAGTATGTTGCCAAACTTGGGATGTGCCCAGG
CCACCTGCCACACTGGTCCCTGGTGTCCCTTGA

BS03710.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6773-PA 1071 sec13-RA 155..1071 933..17 4566 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Sec13-RB 1809 CG6773-RB 543..1459 933..17 4574 99.9 Minus
Sec13-RA 1343 CG6773-RA 258..1174 933..17 4574 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23357398..23358181 800..17 3920 100 Minus
3R 32079331 3R 23356820..23356952 933..801 654 99.2 Minus
Blast to na_te.dros performed 2015-02-06 15:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6803 159..79 135 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6815 166..88 134 63.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2384 166..92 132 64 Minus
roo 9092 roo DM_ROO 9092bp 1043..1123 165..86 132 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2665 161..93 129 65.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6782 127..79 128 73.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2499..2541 127..85 125 76.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2396 127..77 120 70.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6843 161..93 113 65.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6836 206..88 112 58.1 Minus

BS03710.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:44 Download gff for BS03710.3prime
Subject Subject Range Query Range Percent Splice Strand
sec13-PA 156..1071 17..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:48 Download gff for BS03710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6773-PA 156..1071 17..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:12:56 Download gff for BS03710.3prime
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 259..1176 13..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:54:16 Download gff for BS03710.3prime
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 259..1176 13..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:54:16 Download gff for BS03710.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23356821..23356952 801..932 99 -> Minus
3R 23357398..23358183 13..800 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:12:56 Download gff for BS03710.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19182543..19182674 801..932 99 -> Minus
arm_3R 19183120..19183905 13..800 99   Minus

BS03710.5prime Sequence

823 bp (754 high quality bases) assembled on 2005-11-29

> BS03710.5prime
GAAGTTATCAGTCGACATGGTGAGCCTGCTGCAAGAGATCGACACCGAGC
ACGAGGACATGGTCCACCACGCAGCGCTGGACTTCTACGGCCTACTGTTG
GCCACCTGCTCCTCGGACGGCAGCGTCCGCATCTTTCACTCGCGCAAAAA
CAATAAGGCGCTCGCCGAGCTCAAGGGACACCAGGGACCAGTGTGGCAGG
TGGCCTGGGCACATCCCAAGTTTGGCAACATACTGGCATCGTGCTCCTAC
GACCGCAAGGTGATCGTCTGGAAGTCCACAACGCCCCGGGATTGGACTAA
GCTCTACGAATACAGCAACCACGACTCCTCGGTAAACTCGGTGGACTTCG
CGCCATCCGAGTACGGATTGGTGTTGGCCTGCGCCAGTTCGGATGGCTCG
GTATCGGTGCTCACCTGCAACACGGAGTACGGTGTGTGGGATGCCAAGAA
GATACCGAATGCGCACACGATCGGAGTGAATGCCATCTCGTGGTGCCCCG
CCCAGGCACCAGATCCAGCATTTGACCAGCGCGTAACTTCGCGTTCGGCG
GCCGTAAAGCGCCTAGTGAGCGGTGGTTGCGATAATTTAGTGAAGATTTG
GCGGGAGGACAACGACCGCTGGGTGGAGGAGCACCGACTGGAGGCGCACT
CGGATTGGGTGCGCGACGTGGCCTGGGCGCCGTCGATCGGATTGCCCCGC
TCGCAGATTGCCACGGCTTCGCAGGATCGCCATGTGATTGTGTGGAGCAG
CAACGCAAATCTATCCGAGTGGACCTCGACTGTGCTGCACACATTCGACG
ATGCCGTGTGGAGCATCTCGTGG

BS03710.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6773-PA 1071 sec13-RA 1..807 17..823 4010 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
Sec13-RB 1809 CG6773-RB 389..1195 17..823 4020 99.9 Plus
Sec13-RA 1343 CG6773-RA 104..910 17..823 4020 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23357398..23357917 304..823 2585 99.8 Plus
3R 32079331 3R 23356666..23356952 17..303 1435 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:24:39 has no hits.

BS03710.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:30:45 Download gff for BS03710.5prime
Subject Subject Range Query Range Percent Splice Strand
sec13-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:46:49 Download gff for BS03710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6773-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:10:59 Download gff for BS03710.5prime
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 93..910 5..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:42 Download gff for BS03710.5prime
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 93..910 5..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:42 Download gff for BS03710.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23356655..23356952 5..303 98 -> Plus
3R 23357398..23357917 304..823 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:10:59 Download gff for BS03710.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19182377..19182674 5..303 98 -> Plus
arm_3R 19183120..19183639 304..823 99   Plus

BS03710.complete Sequence

1103 bp (1103 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634760

> BS03710.complete
GAAGTTATCAGTCGACATGGTGAGCCTGCTGCAAGAGATCGACACCGAGC
ACGAGGACATGGTCCACCACGCAGCGCTGGACTTCTACGGCCTACTGTTG
GCCACCTGCTCCTCGGACGGCAGCGTCCGCATCTTTCACTCGCGCAAAAA
CAATAAGGCGCTCGCCGAGCTCAAGGGACACCAGGGACCAGTGTGGCAGG
TGGCCTGGGCACATCCCAAGTTTGGCAACATACTGGCATCGTGCTCCTAC
GACCGCAAGGTGATCGTCTGGAAGTCCACAACGCCCCGGGATTGGACTAA
GCTCTACGAATACAGCAACCACGACTCCTCGGTAAACTCGGTGGACTTCG
CGCCATCCGAGTACGGATTGGTGTTGGCCTGCGCCAGTTCGGATGGCTCG
GTATCGGTGCTCACCTGCAACACGGAGTACGGTGTGTGGGATGCCAAGAA
GATACCGAATGCGCACACGATCGGAGTGAATGCCATCTCGTGGTGCCCCG
CCCAGGCACCAGATCCAGCATTTGACCAGCGCGTAACTTCGCGTTCGGCG
GCCGTAAAGCGCCTAGTGAGCGGTGGTTGCGATAATTTAGTGAAGATTTG
GCGGGAGGACAACGACCGCTGGGTGGAGGAGCACCGACTGGAGGCGCACT
CGGATTGGGTGCGCGACGTGGCCTGGGCGCCGTCGATCGGATTGCCCCGC
TCGCAGATTGCCACGGCTTCGCAGGATCGCCATGTGATTGTGTGGAGCAG
CAACGCAGATCTATCCGAGTGGACCTCGACTGTGCTGCACACATTCGACG
ATGCCGTGTGGAGCATCTCGTGGTCAACCACCGGCAACATTCTTGCCGTC
ACCGGTGGGGACAACAATGTCACATTGTGGAAGGAGAACACGGAGGGCCA
ATGGATCCGCATCAACTACGAGTCGGGTACGGCCATCCAGTCGAAGCAGC
CCTCGCACCTTCCGCATTCCCACTCCCAGCAGCAGCAGGCGCTACAACAG
CACCAACAACAGGCGCCATCGCATCCAGGTCCTTCCTCCGATTCGGAGCA
TAGCTCGAACCTGTCCAACTCGCAGCTCTCCAACTGAAAGCTTTCTAGAC
CAT

BS03710.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Sec13-RB 1071 CG6773-PB 1..1071 17..1087 5355 100 Plus
Sec13-RA 1071 CG6773-PA 1..1071 17..1087 5355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sec13-RB 1809 CG6773-RB 389..1459 17..1087 5355 100 Plus
Sec13-RA 1343 CG6773-RA 104..1174 17..1087 5355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23357398..23358181 304..1087 3920 100 Plus
3R 32079331 3R 23356666..23356952 17..303 1435 100 Plus
Blast to na_te.dros performed 2014-11-27 13:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6803 945..1025 135 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6815 938..1016 134 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2384 938..1012 132 64 Plus
roo 9092 roo DM_ROO 9092bp 1043..1123 939..1018 132 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2665 943..1011 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6782 977..1025 128 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2499..2541 977..1019 125 76.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2396 977..1027 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6843 943..1011 113 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6836 898..1016 112 58.1 Plus

BS03710.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:08 Download gff for BS03710.complete
Subject Subject Range Query Range Percent Splice Strand
sec13-RA 1..1071 17..1087 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:02 Download gff for BS03710.complete
Subject Subject Range Query Range Percent Splice Strand
sec13-RA 88..1171 5..1091 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:06 Download gff for BS03710.complete
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 104..1173 17..1086 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:08 Download gff for BS03710.complete
Subject Subject Range Query Range Percent Splice Strand
sec13-RA 88..1171 5..1091 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:27 Download gff for BS03710.complete
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 104..1173 17..1086 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:27 Download gff for BS03710.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23356666..23356952 17..303 100 -> Plus
3R 23357398..23358180 304..1086 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:06 Download gff for BS03710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19182388..19182674 17..303 100 -> Plus
arm_3R 19183120..19183902 304..1086 100   Plus

BS03710.pep Sequence

Translation from 16 to 1086

> BS03710.pep
MVSLLQEIDTEHEDMVHHAALDFYGLLLATCSSDGSVRIFHSRKNNKALA
ELKGHQGPVWQVAWAHPKFGNILASCSYDRKVIVWKSTTPRDWTKLYEYS
NHDSSVNSVDFAPSEYGLVLACASSDGSVSVLTCNTEYGVWDAKKIPNAH
TIGVNAISWCPAQAPDPAFDQRVTSRSAAVKRLVSGGCDNLVKIWREDND
RWVEEHRLEAHSDWVRDVAWAPSIGLPRSQIATASQDRHVIVWSSNADLS
EWTSTVLHTFDDAVWSISWSTTGNILAVTGGDNNVTLWKENTEGQWIRIN
YESGTAIQSKQPSHLPHSHSQQQQALQQHQQQAPSHPGPSSDSEHSSNLS
NSQLSN*

BS03710.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Sec13-PB 356 CG6773-PB 1..356 1..356 1920 100 Plus
Sec13-PA 356 CG6773-PA 1..356 1..356 1920 100 Plus
Nup44A-PA 354 CG8722-PA 4..307 5..296 357 27.7 Plus
Nup44A-PC 354 CG8722-PC 4..307 5..296 357 27.7 Plus
Nup44A-PB 354 CG8722-PB 4..307 5..296 357 27.7 Plus