Clone Sequence Records
BS03726.3prime Sequence
837 bp (836 high quality bases) assembled on 2005-12-01
> BS03726.3prime
ATGGTCTAGAAAGCTTTCAGGCCTTGTAGTGCTGATTCCTCACCGCGCAG
CAGAGGCTCAGGGCGAAAGTCAGGGACAGCAGCTCCAGCAGAATGACAGC
GGCGGTGACGGCGAAAATGGTGACCCAGTTCTCGTAGATGATTTCAATCA
GCTTGTCCACGCAGCCCTGCTGATAAATGGCGTTGTTCAATGGGCCACCA
AATTTCAGGCGTCTGGACAGCTCACACTCATTATCCTTTAGATTATCCTT
GCAGCAGGACTCGGGTATGTTATAGAAGACATTCATGGAAGACACGGCGA
TCTCCACAATATTTGTGCGATCCACATTATTAAACCGACTCGTGGCCCAA
TCTCCAGGTCCATCGGCGCCGCAGCATTTCAAATTCTTTTGCAGCGTATC
AAAGGTGACGGTGCGCGAACTCATCGTGGACTGGCCGTACTCCTCCTGGA
CTGACGACTTGACAGCCGCCCGCACGATGTCATCCAGCTTGTCTTTGTTG
TGGAAGGCCCATGCTCCGGCTGCAATTTGTGCCACCATCACGATGAGTAT
GACACAGAAGAACGAAACCAGCAGACATTGCGACTCACGACAGACTCCGC
AACAGCCAAAGAATGCGCCCAATGTGATCAGTATGCCGATGGCGAGGAAA
ACATACAGGGCTATGTGATAATGATTGTAGTTCTGTGTCATCGACAGCAT
AAATGTGGGATCCGTCAGCATCCAAACGGAGGTCACCACGATGGTCAGTC
CGATGAGCCAGAATAAAATGTTTATAAGGACCATCAGATATTTGACGCAC
GAACAGCAGCCGTTGAGACCCATGTCGACTGATAACT
BS03726.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6120-PA | 807 | Tsp96F-RA | 1..807 | 823..17 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-RC | 3343 | CG6120-RC | 346..1153 | 824..17 | 4040 | 100 | Minus |
Tsp96F-RB | 2709 | CG6120-RB | 346..1153 | 824..17 | 4040 | 100 | Minus |
Tsp96F-RA | 2709 | CG6120-RA | 346..1153 | 824..17 | 4040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25875658..25875874 | 166..382 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 25876532..25876727 | 563..758 | 980 | 100 | Plus |
3R | 32079331 | 3R | 25875945..25876125 | 383..563 | 905 | 100 | Plus |
3R | 32079331 | 3R | 25875090..25875243 | 17..170 | 770 | 100 | Plus |
3R | 32079331 | 3R | 25881016..25881082 | 758..824 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:46:32 has no hits.
BS03726.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:31:08 Download gff for
BS03726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6120-PA | 1..807 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:47:22 Download gff for
BS03726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6120-PA | 1..807 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:03:42 Download gff for
BS03726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 338..1158 | 11..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:10 Download gff for
BS03726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 338..1158 | 11..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:10 Download gff for
BS03726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25875085..25875239 | 11..166 | 98 | <- | Plus |
3R | 25875659..25875874 | 167..382 | 100 | <- | Plus |
3R | 25875945..25876124 | 383..562 | 100 | <- | Plus |
3R | 25876532..25876726 | 563..757 | 100 | <- | Plus |
3R | 25881016..25881090 | 758..833 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:03:42 Download gff for
BS03726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21700807..21700961 | 11..166 | 98 | <- | Plus |
arm_3R | 21701381..21701596 | 167..382 | 100 | <- | Plus |
arm_3R | 21701667..21701846 | 383..562 | 100 | <- | Plus |
arm_3R | 21702254..21702448 | 563..757 | 100 | <- | Plus |
arm_3R | 21706738..21706812 | 758..833 | 96 | | Plus |
BS03726.5prime Sequence
832 bp (705 high quality bases) assembled on 2005-11-29
> BS03726.5prime
GAAGTTATCAGTCGACATGGGTCTCAACGGCTGCTGTTCGTGCGTCAAAT
ATCTGATGGTCCTTATAAACATTTTATTCTGGCTCATCGGACTGACCATC
GTGGTGACCTCCGTTTGGATGCTGACGGATCCCACATTTATGCTGTCGAT
GACACAGAACTACAATCATTATCACATAGCCCTGTATGTTTTCCTCGCCA
TCGGCATACTGATCACATTGGGCGCATTCTTTGGCTGTTGCGGAGTCTGT
CGTGAGTCGCAATGTCTGCTGGTTTCGTTCTTCTGTGTCATACTCATCGT
GATGGTGGCACAAATTGCAGCCGGAGCATGGGCCTTCCACAACAAAGACA
AGCTGGATGACATCGTGCGGGCGGCTGTCAAGTCGTCAGTCCAGGAGGAG
TACGGCCAGTCCACGATGAGTTCGCGCACCGTCACCTTTGATACGCTGCA
AAAGAATTTGAAATGCTGCGGCGCCGATGGACCTGGAGATTGGGCCACGA
GTCGGTTTAATAATGTGGATCGCACAAATATTGTGGAGATCGCCGTGTCT
TCCATGAATGTCTTCTATAACATACCCGAGTCCTGCTGCAAGGATAATCT
AAAGGATAATGAGTGTGAGCTGTCCAGACGCCTGAAATTTGGTGGCCCAT
TGAACAACGCCATTTATCAGCAGGGCTGCGTGGACAAGCTGATTGAAATC
ATCTACGAGAACTGGGTCACCATTTTCGCCGTCACCGCCGCTGTCATTCT
GCTGGAGCTGCTGTCCCTGACTTTCGCCCTGAGCCTCTGCTGCGCGGTGA
GGAATCAGCACTAACAGGCCTGAAAGCTTTCT
BS03726.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6120-PA | 807 | Tsp96F-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:15:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-RC | 3343 | CG6120-RC | 346..1153 | 16..823 | 4010 | 99.8 | Plus |
Tsp96F-RB | 2709 | CG6120-RB | 346..1153 | 16..823 | 4010 | 99.8 | Plus |
Tsp96F-RA | 2709 | CG6120-RA | 346..1153 | 16..823 | 4010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25875658..25875874 | 674..458 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 25876532..25876727 | 277..82 | 980 | 100 | Minus |
3R | 32079331 | 3R | 25875945..25876125 | 457..277 | 905 | 100 | Minus |
3R | 32079331 | 3R | 25875090..25875243 | 823..670 | 740 | 98.7 | Minus |
3R | 32079331 | 3R | 25881016..25881082 | 82..16 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:14:57 has no hits.
BS03726.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:31:10 Download gff for
BS03726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6120-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:47:23 Download gff for
BS03726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6120-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:05 Download gff for
BS03726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 338..1158 | 7..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:51 Download gff for
BS03726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 338..1158 | 7..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:51 Download gff for
BS03726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25875096..25875239 | 674..817 | 98 | <- | Minus |
3R | 25875659..25875874 | 458..673 | 100 | <- | Minus |
3R | 25875945..25876124 | 278..457 | 100 | <- | Minus |
3R | 25876532..25876726 | 83..277 | 100 | <- | Minus |
3R | 25881016..25881090 | 7..82 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:05 Download gff for
BS03726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21700818..21700961 | 674..817 | 98 | <- | Minus |
arm_3R | 21701381..21701596 | 458..673 | 100 | <- | Minus |
arm_3R | 21701667..21701846 | 278..457 | 100 | <- | Minus |
arm_3R | 21702254..21702448 | 83..277 | 100 | <- | Minus |
arm_3R | 21706738..21706812 | 7..82 | 96 | | Minus |
BS03726.complete Sequence
839 bp (839 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634761
> BS03726.complete
GAAGTTATCAGTCGACATGGGTCTCAACGGCTGCTGTTCGTGCGTCAAAT
ATCTGATGGTCCTTATAAACATTTTATTCTGGCTCATCGGACTGACCATC
GTGGTGACCTCCGTTTGGATGCTGACGGATCCCACATTTATGCTGTCGAT
GACACAGAACTACAATCATTATCACATAGCCCTGTATGTTTTCCTCGCCA
TCGGCATACTGATCACATTGGGCGCATTCTTTGGCTGTTGCGGAGTCTGT
CGTGAGTCGCAATGTCTGCTGGTTTCGTTCTTCTGTGTCATACTCATCGT
GATGGTGGCACAAATTGCAGCCGGAGCATGGGCCTTCCACAACAAAGACA
AGCTGGATGACATCGTGCGGGCGGCTGTCAAGTCGTCAGTCCAGGAGGAG
TACGGCCAGTCCACGATGAGTTCGCGCACCGTCACCTTTGATACGCTGCA
AAAGAATTTGAAATGCTGCGGCGCCGATGGACCTGGAGATTGGGCCACGA
GTCGGTTTAATAATGTGGATCGCACAAATATTGTGGAGATCGCCGTGTCT
TCCATGAATGTCTTCTATAACATACCCGAGTCCTGCTGCAAGGATAATCT
AAAGGATAATGAGTGTGAGCTGTCCAGACGCCTGAAATTTGGTGGCCCAT
TGAACAACGCCATTTATCAGCAGGGCTGCGTGGACAAGCTGATTGAAATC
ATCTACGAGAACTGGGTCACCATTTTCGCCGTCACCGCCGCTGTCATTCT
GCTGGAGCTGCTGTCCCTGACTTTCGCCCTGAGCCTCTGCTGCGCGGTGA
GGAATCAGCACTACAAGGCCTGAAAGCTTTCTAGACCAT
BS03726.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-RC | 807 | CG6120-PC | 1..807 | 17..823 | 4035 | 100 | Plus |
Tsp96F-RB | 855 | CG6120-PB | 1..807 | 17..823 | 4035 | 100 | Plus |
Tsp96F-RA | 807 | CG6120-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-RC | 3343 | CG6120-RC | 346..1153 | 16..823 | 4040 | 100 | Plus |
Tsp96F-RB | 2709 | CG6120-RB | 346..1153 | 16..823 | 4040 | 100 | Plus |
Tsp96F-RA | 2709 | CG6120-RA | 346..1153 | 16..823 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25875658..25875874 | 674..458 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 25876532..25876727 | 277..82 | 980 | 100 | Minus |
3R | 32079331 | 3R | 25875945..25876125 | 457..277 | 905 | 100 | Minus |
3R | 32079331 | 3R | 25875090..25875243 | 823..670 | 770 | 100 | Minus |
3R | 32079331 | 3R | 25881016..25881082 | 82..16 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:18:03 has no hits.
BS03726.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:55 Download gff for
BS03726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:49 Download gff for
BS03726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 351..1171 | 7..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:30 Download gff for
BS03726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 347..1152 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:55 Download gff for
BS03726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 351..1171 | 7..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:16 Download gff for
BS03726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 347..1152 | 17..822 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:16 Download gff for
BS03726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25875659..25875874 | 458..673 | 100 | <- | Minus |
3R | 25875945..25876124 | 278..457 | 100 | <- | Minus |
3R | 25876532..25876726 | 83..277 | 100 | <- | Minus |
3R | 25881016..25881081 | 17..82 | 100 | | Minus |
3R | 25875091..25875239 | 674..822 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:30 Download gff for
BS03726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21700813..21700961 | 674..822 | 100 | <- | Minus |
arm_3R | 21701381..21701596 | 458..673 | 100 | <- | Minus |
arm_3R | 21701667..21701846 | 278..457 | 100 | <- | Minus |
arm_3R | 21702254..21702448 | 83..277 | 100 | <- | Minus |
arm_3R | 21706738..21706803 | 17..82 | 100 | | Minus |
BS03726.pep Sequence
Translation from 16 to 822
> BS03726.pep
MGLNGCCSCVKYLMVLINILFWLIGLTIVVTSVWMLTDPTFMLSMTQNYN
HYHIALYVFLAIGILITLGAFFGCCGVCRESQCLLVSFFCVILIVMVAQI
AAGAWAFHNKDKLDDIVRAAVKSSVQEEYGQSTMSSRTVTFDTLQKNLKC
CGADGPGDWATSRFNNVDRTNIVEIAVSSMNVFYNIPESCCKDNLKDNEC
ELSRRLKFGGPLNNAIYQQGCVDKLIEIIYENWVTIFAVTAAVILLELLS
LTFALSLCCAVRNQHYKA*
BS03726.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-PC | 268 | CG6120-PC | 1..268 | 1..268 | 1417 | 100 | Plus |
Tsp96F-PA | 268 | CG6120-PA | 1..268 | 1..268 | 1417 | 100 | Plus |
Tsp96F-PB | 284 | CG6120-PB | 1..268 | 1..268 | 1417 | 100 | Plus |
Tsp26A-PC | 277 | CG9093-PC | 18..275 | 9..267 | 263 | 28.4 | Plus |
Tsp47F-PB | 239 | CG9033-PB | 7..239 | 8..267 | 260 | 25.3 | Plus |