Clone BS03726 Report

Search the DGRC for BS03726

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:37
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptTsp96F-RA
Protein status:BS03726.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03726.3prime Sequence

837 bp (836 high quality bases) assembled on 2005-12-01

> BS03726.3prime
ATGGTCTAGAAAGCTTTCAGGCCTTGTAGTGCTGATTCCTCACCGCGCAG
CAGAGGCTCAGGGCGAAAGTCAGGGACAGCAGCTCCAGCAGAATGACAGC
GGCGGTGACGGCGAAAATGGTGACCCAGTTCTCGTAGATGATTTCAATCA
GCTTGTCCACGCAGCCCTGCTGATAAATGGCGTTGTTCAATGGGCCACCA
AATTTCAGGCGTCTGGACAGCTCACACTCATTATCCTTTAGATTATCCTT
GCAGCAGGACTCGGGTATGTTATAGAAGACATTCATGGAAGACACGGCGA
TCTCCACAATATTTGTGCGATCCACATTATTAAACCGACTCGTGGCCCAA
TCTCCAGGTCCATCGGCGCCGCAGCATTTCAAATTCTTTTGCAGCGTATC
AAAGGTGACGGTGCGCGAACTCATCGTGGACTGGCCGTACTCCTCCTGGA
CTGACGACTTGACAGCCGCCCGCACGATGTCATCCAGCTTGTCTTTGTTG
TGGAAGGCCCATGCTCCGGCTGCAATTTGTGCCACCATCACGATGAGTAT
GACACAGAAGAACGAAACCAGCAGACATTGCGACTCACGACAGACTCCGC
AACAGCCAAAGAATGCGCCCAATGTGATCAGTATGCCGATGGCGAGGAAA
ACATACAGGGCTATGTGATAATGATTGTAGTTCTGTGTCATCGACAGCAT
AAATGTGGGATCCGTCAGCATCCAAACGGAGGTCACCACGATGGTCAGTC
CGATGAGCCAGAATAAAATGTTTATAAGGACCATCAGATATTTGACGCAC
GAACAGCAGCCGTTGAGACCCATGTCGACTGATAACT

BS03726.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6120-PA 807 Tsp96F-RA 1..807 823..17 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-RC 3343 CG6120-RC 346..1153 824..17 4040 100 Minus
Tsp96F-RB 2709 CG6120-RB 346..1153 824..17 4040 100 Minus
Tsp96F-RA 2709 CG6120-RA 346..1153 824..17 4040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25875658..25875874 166..382 1085 100 Plus
3R 32079331 3R 25876532..25876727 563..758 980 100 Plus
3R 32079331 3R 25875945..25876125 383..563 905 100 Plus
3R 32079331 3R 25875090..25875243 17..170 770 100 Plus
3R 32079331 3R 25881016..25881082 758..824 335 100 Plus
Blast to na_te.dros performed on 2015-02-03 13:46:32 has no hits.

BS03726.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:31:08 Download gff for BS03726.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6120-PA 1..807 17..823 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:47:22 Download gff for BS03726.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6120-PA 1..807 17..823 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:03:42 Download gff for BS03726.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 338..1158 11..833 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:10 Download gff for BS03726.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 338..1158 11..833 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:10 Download gff for BS03726.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25875085..25875239 11..166 98 <- Plus
3R 25875659..25875874 167..382 100 <- Plus
3R 25875945..25876124 383..562 100 <- Plus
3R 25876532..25876726 563..757 100 <- Plus
3R 25881016..25881090 758..833 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:03:42 Download gff for BS03726.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21700807..21700961 11..166 98 <- Plus
arm_3R 21701381..21701596 167..382 100 <- Plus
arm_3R 21701667..21701846 383..562 100 <- Plus
arm_3R 21702254..21702448 563..757 100 <- Plus
arm_3R 21706738..21706812 758..833 96   Plus

BS03726.5prime Sequence

832 bp (705 high quality bases) assembled on 2005-11-29

> BS03726.5prime
GAAGTTATCAGTCGACATGGGTCTCAACGGCTGCTGTTCGTGCGTCAAAT
ATCTGATGGTCCTTATAAACATTTTATTCTGGCTCATCGGACTGACCATC
GTGGTGACCTCCGTTTGGATGCTGACGGATCCCACATTTATGCTGTCGAT
GACACAGAACTACAATCATTATCACATAGCCCTGTATGTTTTCCTCGCCA
TCGGCATACTGATCACATTGGGCGCATTCTTTGGCTGTTGCGGAGTCTGT
CGTGAGTCGCAATGTCTGCTGGTTTCGTTCTTCTGTGTCATACTCATCGT
GATGGTGGCACAAATTGCAGCCGGAGCATGGGCCTTCCACAACAAAGACA
AGCTGGATGACATCGTGCGGGCGGCTGTCAAGTCGTCAGTCCAGGAGGAG
TACGGCCAGTCCACGATGAGTTCGCGCACCGTCACCTTTGATACGCTGCA
AAAGAATTTGAAATGCTGCGGCGCCGATGGACCTGGAGATTGGGCCACGA
GTCGGTTTAATAATGTGGATCGCACAAATATTGTGGAGATCGCCGTGTCT
TCCATGAATGTCTTCTATAACATACCCGAGTCCTGCTGCAAGGATAATCT
AAAGGATAATGAGTGTGAGCTGTCCAGACGCCTGAAATTTGGTGGCCCAT
TGAACAACGCCATTTATCAGCAGGGCTGCGTGGACAAGCTGATTGAAATC
ATCTACGAGAACTGGGTCACCATTTTCGCCGTCACCGCCGCTGTCATTCT
GCTGGAGCTGCTGTCCCTGACTTTCGCCCTGAGCCTCTGCTGCGCGGTGA
GGAATCAGCACTAACAGGCCTGAAAGCTTTCT

BS03726.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6120-PA 807 Tsp96F-RA 1..797 17..813 3985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-RC 3343 CG6120-RC 346..1153 16..823 4010 99.8 Plus
Tsp96F-RB 2709 CG6120-RB 346..1153 16..823 4010 99.8 Plus
Tsp96F-RA 2709 CG6120-RA 346..1153 16..823 4010 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25875658..25875874 674..458 1085 100 Minus
3R 32079331 3R 25876532..25876727 277..82 980 100 Minus
3R 32079331 3R 25875945..25876125 457..277 905 100 Minus
3R 32079331 3R 25875090..25875243 823..670 740 98.7 Minus
3R 32079331 3R 25881016..25881082 82..16 335 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:14:57 has no hits.

BS03726.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:31:10 Download gff for BS03726.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6120-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:47:23 Download gff for BS03726.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6120-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:05 Download gff for BS03726.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 338..1158 7..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:51 Download gff for BS03726.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 338..1158 7..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:51 Download gff for BS03726.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25875096..25875239 674..817 98 <- Minus
3R 25875659..25875874 458..673 100 <- Minus
3R 25875945..25876124 278..457 100 <- Minus
3R 25876532..25876726 83..277 100 <- Minus
3R 25881016..25881090 7..82 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:05 Download gff for BS03726.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21700818..21700961 674..817 98 <- Minus
arm_3R 21701381..21701596 458..673 100 <- Minus
arm_3R 21701667..21701846 278..457 100 <- Minus
arm_3R 21702254..21702448 83..277 100 <- Minus
arm_3R 21706738..21706812 7..82 96   Minus

BS03726.complete Sequence

839 bp (839 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634761

> BS03726.complete
GAAGTTATCAGTCGACATGGGTCTCAACGGCTGCTGTTCGTGCGTCAAAT
ATCTGATGGTCCTTATAAACATTTTATTCTGGCTCATCGGACTGACCATC
GTGGTGACCTCCGTTTGGATGCTGACGGATCCCACATTTATGCTGTCGAT
GACACAGAACTACAATCATTATCACATAGCCCTGTATGTTTTCCTCGCCA
TCGGCATACTGATCACATTGGGCGCATTCTTTGGCTGTTGCGGAGTCTGT
CGTGAGTCGCAATGTCTGCTGGTTTCGTTCTTCTGTGTCATACTCATCGT
GATGGTGGCACAAATTGCAGCCGGAGCATGGGCCTTCCACAACAAAGACA
AGCTGGATGACATCGTGCGGGCGGCTGTCAAGTCGTCAGTCCAGGAGGAG
TACGGCCAGTCCACGATGAGTTCGCGCACCGTCACCTTTGATACGCTGCA
AAAGAATTTGAAATGCTGCGGCGCCGATGGACCTGGAGATTGGGCCACGA
GTCGGTTTAATAATGTGGATCGCACAAATATTGTGGAGATCGCCGTGTCT
TCCATGAATGTCTTCTATAACATACCCGAGTCCTGCTGCAAGGATAATCT
AAAGGATAATGAGTGTGAGCTGTCCAGACGCCTGAAATTTGGTGGCCCAT
TGAACAACGCCATTTATCAGCAGGGCTGCGTGGACAAGCTGATTGAAATC
ATCTACGAGAACTGGGTCACCATTTTCGCCGTCACCGCCGCTGTCATTCT
GCTGGAGCTGCTGTCCCTGACTTTCGCCCTGAGCCTCTGCTGCGCGGTGA
GGAATCAGCACTACAAGGCCTGAAAGCTTTCTAGACCAT

BS03726.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-RC 807 CG6120-PC 1..807 17..823 4035 100 Plus
Tsp96F-RB 855 CG6120-PB 1..807 17..823 4035 100 Plus
Tsp96F-RA 807 CG6120-PA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-RC 3343 CG6120-RC 346..1153 16..823 4040 100 Plus
Tsp96F-RB 2709 CG6120-RB 346..1153 16..823 4040 100 Plus
Tsp96F-RA 2709 CG6120-RA 346..1153 16..823 4040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25875658..25875874 674..458 1085 100 Minus
3R 32079331 3R 25876532..25876727 277..82 980 100 Minus
3R 32079331 3R 25875945..25876125 457..277 905 100 Minus
3R 32079331 3R 25875090..25875243 823..670 770 100 Minus
3R 32079331 3R 25881016..25881082 82..16 335 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:18:03 has no hits.

BS03726.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:55 Download gff for BS03726.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:49 Download gff for BS03726.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 351..1171 7..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:30 Download gff for BS03726.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 347..1152 17..822 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:55 Download gff for BS03726.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 351..1171 7..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:16 Download gff for BS03726.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 347..1152 17..822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:16 Download gff for BS03726.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25875659..25875874 458..673 100 <- Minus
3R 25875945..25876124 278..457 100 <- Minus
3R 25876532..25876726 83..277 100 <- Minus
3R 25881016..25881081 17..82 100   Minus
3R 25875091..25875239 674..822 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:30 Download gff for BS03726.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21700813..21700961 674..822 100 <- Minus
arm_3R 21701381..21701596 458..673 100 <- Minus
arm_3R 21701667..21701846 278..457 100 <- Minus
arm_3R 21702254..21702448 83..277 100 <- Minus
arm_3R 21706738..21706803 17..82 100   Minus

BS03726.pep Sequence

Translation from 16 to 822

> BS03726.pep
MGLNGCCSCVKYLMVLINILFWLIGLTIVVTSVWMLTDPTFMLSMTQNYN
HYHIALYVFLAIGILITLGAFFGCCGVCRESQCLLVSFFCVILIVMVAQI
AAGAWAFHNKDKLDDIVRAAVKSSVQEEYGQSTMSSRTVTFDTLQKNLKC
CGADGPGDWATSRFNNVDRTNIVEIAVSSMNVFYNIPESCCKDNLKDNEC
ELSRRLKFGGPLNNAIYQQGCVDKLIEIIYENWVTIFAVTAAVILLELLS
LTFALSLCCAVRNQHYKA*

BS03726.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-PC 268 CG6120-PC 1..268 1..268 1417 100 Plus
Tsp96F-PA 268 CG6120-PA 1..268 1..268 1417 100 Plus
Tsp96F-PB 284 CG6120-PB 1..268 1..268 1417 100 Plus
Tsp26A-PC 277 CG9093-PC 18..275 9..267 263 28.4 Plus
Tsp47F-PB 239 CG9033-PB 7..239 8..267 260 25.3 Plus