Clone Sequence Records
BS03727.3prime Sequence
935 bp (835 high quality bases) assembled on 2005-12-01
> BS03727.3prime
ATGGTCTAGAAAGCTTTCACTTGCCACCAAAGCCGCTCATCAGGTTCCCC
AGGCCACCCAAACCGCCCGCAGCTCCCTGCTGCAGTTGCCTCATCATGTT
CTGGATACCACCAACGCCGCCCATCTGTTGCAGCATCCGGGGATCGATCA
TCTTCGCTATCTGCTGGTTGAGCTTGGCCATCTGTGTTGGATTCACATTC
TTGGTCATGTCGCCCTGCTTGAACAGTCCCTTAACGCCGCCCATCTTCTT
TACTACCGCCGAAAATTTCGTATAGTGTGCAATCAGTTCCTTGACCTCGC
GCTCCATGACACCAGCTCCCTGGGCCACACGAACGCAGCGGTTTGGCTGC
TTGCTAAAGAGCTTTGCTCCGTCGCGATTGTCCAGTTCATTATCCGACAT
ACTGTCCATCATCGTCATCATACGCTTAACGCGCGCCATCGACTCCTGTT
CGCCGCCCTTGGTCATAAAGTCCTGCGAGAAACCGGGTATCATGTTCATG
AACTGGGAGAAGGGGCCCATCTTCATGATGTTCTGGAACTGCTCGTACAT
GTCGCGGATGGTGAAATGACCGTGCTTGATCTTTTCTAACAGCTCATCGT
TTCCGTCTAGCTTCAGCTCGTTTACCTTATCTATCAGTCCTTCGATGTCA
CCCATTCCAAGCAGTTTGCTCACAAAGGGTTTCGTCTTGAACGGCTCCAG
ATCGTCGATGTGTTCGCCCGTACCGATGAAGATGATGGGCGACTGTGTGG
CTGCCACTGCGGACAGAGCTCCGCCTCCCTTGGCGTGGCCATCCAACTTG
GTTATGATCACCGAACCGATGTCCACCTTGTCTTTGAGGGCTTTCGCTTG
AGCCCTCGCAGCCTGTCCGATGGTGGCGTCCATCACGAAGATTATGTTGT
CGGGACTGACGGCATTGGACACTGCCCACATCTCC
BS03727.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4659-PA | 1527 | Srp54k-RA | 690..1527 | 854..17 | 3965 | 98.9 | Minus |
| CG4659-PA | 1527 | Srp54k-RA | 609..684 | 935..860 | 355 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp54k-RA | 2015 | CG4659-RA | 777..1695 | 935..17 | 4400 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5153847..5154457 | 627..17 | 2980 | 99.2 | Minus |
| 3L | 28110227 | 3L | 5153454..5153765 | 935..624 | 1410 | 96.8 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:43:37 has no hits.
BS03727.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:31:11 Download gff for
BS03727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4659-PA | 609..1527 | 17..935 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:47:25 Download gff for
BS03727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4659-PA | 609..1527 | 17..935 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:03:10 Download gff for
BS03727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp54k-RA | 777..1697 | 13..935 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:45 Download gff for
BS03727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp54k-RA | 777..1697 | 13..935 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:45 Download gff for
BS03727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5153454..5153763 | 626..935 | 97 | -> | Minus |
| 3L | 5153849..5154459 | 13..625 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:03:10 Download gff for
BS03727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5146554..5146863 | 626..935 | 97 | -> | Minus |
| arm_3L | 5146949..5147559 | 13..625 | 98 | | Minus |
BS03727.5prime Sequence
902 bp (728 high quality bases) assembled on 2005-11-29
> BS03727.5prime
GAAGTTATCAGTCGACATGGTTCTCGCGGATTTGGGTCGCAAGATAACAA
CGGCGCTGCACTCGCTCAGCAAGGCGACCGTAATCAATGAGGAGGCACTG
AATTCCATGCTGAAGGAGATCTGCGCAGCGCTCCTGGAGGCTGATGTGAA
TATCCGACTGGTTAAGCAGCTGCGCGAGAATGTGCGTGCCGTTATTGATT
TCGATGAGATGGCCGGTGGCCTGAACAAGAGGCGAATGATCCAATCGGCT
GTGTTCAAGGAGCTCGTCAAACTGGTCGATCCCGGCGTGAAACCCTACCA
ACCCATCAAGGGCAAGGCCAATGTGGTCATGTTTGTGGGTCTGCAGGGCT
CCGGTAAGACCACCACCTGTACCAAGCTGGCCTATCACTACCAGAAGCGC
AACTGGAAGTCGTGTCTCGTGTGCGCGGATACCTTCCGTGCTGGTGCTTA
CGATCAGGTCAAGCAGAACGCCACCAAGGCGCGCATTCCGTTCTACGGCA
GCTACACGGAAATCGATCCCGTGGTCATTGCCCAGGACGGTGTGGATATG
TTCAAACGCGAGGGTTTCGAGATGATCATTGTGGACACCTCGGGTCGGCA
CAAGCAGGAGGAATCACTGTTCGAGGAGATGTTGGCAGTGTCCAATGCCG
TCAGTCCCGACAACATAATCTTCGTGATGGACGCCACCATCGGACAGGCT
TGCGAGGCTCAAGCGAAAGCCTTCAAAGACAAGGTGGACATCGGTTCGGT
GATCATAACCAAGTTGGATGGCCACGCCAAGGGAGGCGGAGCTCTGTCCG
CAGTGGCAGCCACACAGTCGCCCATCATCTTCATCGGTACGGGCGAACAC
ATCGACGATCTGGAGCCGTTCAAGACGAAACCCTTTGTGAGCAAACTGCT
TG
BS03727.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4659-PA | 1527 | Srp54k-RA | 1..886 | 17..902 | 4330 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp54k-RA | 2015 | CG4659-RA | 169..1054 | 17..902 | 4370 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5152846..5153731 | 17..902 | 4370 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-11 15:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 1841..1921 | 272..190 | 112 | 64.3 | Minus |
BS03727.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:31:12 Download gff for
BS03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4659-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:47:26 Download gff for
BS03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4659-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:31:11 Download gff for
BS03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp54k-RA | 169..1054 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:56 Download gff for
BS03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp54k-RA | 169..1054 | 17..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:56 Download gff for
BS03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5152846..5153731 | 17..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:31:11 Download gff for
BS03727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5145946..5146831 | 17..902 | 99 | | Plus |
BS03727.complete Sequence
1559 bp (1559 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634762
> BS03727.complete
GAAGTTATCAGTCGACATGGTTCTCGCGGATTTGGGTCGCAAGATAACAA
CGGCGCTGCACTCGCTCAGCAAGGCGACCGTAATCAATGAGGAGGCACTG
AATTCCATGCTGAAGGAGATCTGCGCAGCGCTCCTGGAGGCTGATGTGAA
TATCCGACTGGTTAAGCAGCTGCGCGAGAATGTGCGTGCCGTTATTGATT
TCGATGAGATGGCCGGTGGCCTGAACAAGAGGCGAATGATCCAATCGGCT
GTGTTCAAGGAGCTCGTCAAACTGGTCGATCCCGGCGTGAAACCCTACCA
ACCCATCAAGGGCAAGGCCAATGTGGTCATGTTTGTGGGTCTGCAGGGCT
CCGGTAAGACCACCACCTGTACCAAGCTGGCCTATCACTACCAGAAGCGC
AACTGGAAGTCGTGTCTCGTGTGCGCGGATACCTTCCGTGCTGGTGCTTA
CGATCAGGTCAAGCAGAACGCCACCAAGGCGCGCATTCCGTTCTACGGCA
GCTACACGGAAATCGATCCCGTGGTCATTGCCCAGGACGGTGTGGATATG
TTCAAACGCGAGGGTTTCGAGATGATCATTGTGGACACCTCGGGTCGGCA
CAAGCAGGAGGAATCACTGTTCGAGGAGATGTTGGCAGTGTCCAATGCCG
TCAGTCCCGACAACATAATCTTCGTGATGGACGCCACCATCGGACAGGCT
TGCGAGGCTCAAGCGAAAGCCTTCAAAGACAAGGTGGACATCGGTTCGGT
GATCATAACCAAGTTGGATGGCCACGCCAAGGGAGGCGGAGCTCTGTCCG
CAGTGGCAGCCACACAGTCGCCCATCATCTTCATCGGTACGGGCGAACAC
ATCGACGATCTGGAGCCGTTCAAGACGAAACCCTTTGTGAGCAAACTGCT
TGGAATGGGTGACATCGAAGGACTGATAGATAAGGTAAACGAGCTGAAGC
TAGACGGAAACGATGAGCTGTTAGAAAAGATCAAGCACGGTCATTTCACC
ATCCGCGACATGTACGAGCAGTTCCAGAACATCATGAAGATGGGCCCCTT
CTCCCAGTTCATGAACATGATACCCGGTTTCTCGCAGGACTTTATGACCA
AGGGCGGCGAACAGGAGTCGATGGCGCGCGTTAAGCGTATGATGACGATG
ATGGACAGTATGTCGGATAATGAACTGGACAATCGCGACGGAGCAAAGCT
CTTTAGCAAGCAGCCAAACCGCTGCGTTCGTGTGGCCCAGGGAGCTGGTG
TCATGGAGCGCGAGGTCAAGGAACTGATTGCACACTATACGAAATTTTCG
GCGGTAGTAAAGAAGATGGGCGGCGTTAAGGGACTGTTCAAGCAGGGCGA
CATGACCAAGAATGTGAATCCAACACAGATGGCCAAGCTCAACCAGCAGA
TAGCGAAGATGATCGATCCCCGGATGCTGCAACAGATGGGCGGCGTTGGT
GGTATCCAGAACATGATGAGGCAACTGCAGCAGGGAGCTGCGGGCGGTTT
GGGTGGCCTGGGGAACCTGATGAGCGGCTTTGGTGGCAAGTGAAAGCTTT
CTAGACCAT
BS03727.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp54k-RA | 1527 | CG4659-PA | 1..1527 | 17..1543 | 7500 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp54k-RA | 2015 | CG4659-RA | 169..1695 | 17..1543 | 7500 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5152846..5153765 | 17..936 | 4540 | 99.6 | Plus |
| 3L | 28110227 | 3L | 5153847..5154457 | 933..1543 | 2980 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:59:14 has no hits.
BS03727.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:56 Download gff for
BS03727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp54k-RA | 1..1527 | 17..1543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:51 Download gff for
BS03727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp54k-RA | 278..1806 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:07 Download gff for
BS03727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp54k-RA | 169..1694 | 17..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:56 Download gff for
BS03727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp54k-RA | 278..1806 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:24 Download gff for
BS03727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp54k-RA | 169..1694 | 17..1542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:24 Download gff for
BS03727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5152846..5153763 | 17..934 | 99 | -> | Plus |
| 3L | 5153849..5154456 | 935..1542 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:07 Download gff for
BS03727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5145946..5146863 | 17..934 | 99 | -> | Plus |
| arm_3L | 5146949..5147556 | 935..1542 | 99 | | Plus |
BS03727.pep Sequence
Translation from 16 to 1542
> BS03727.pep
MVLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVK
QLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPIKGK
ANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQ
NATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEES
LFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKL
DGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDI
EGLIDKVNELKLDGNDELLEKIKHGHFTIRDMYEQFQNIMKMGPFSQFMN
MIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFSKQP
NRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMTKNV
NPTQMAKLNQQIAKMIDPRMLQQMGGVGGIQNMMRQLQQGAAGGLGGLGN
LMSGFGGK*
BS03727.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp54k-PA | 508 | CG4659-PA | 1..508 | 1..508 | 2593 | 100 | Plus |
| Gtp-bp-PA | 614 | CG2522-PA | 315..613 | 28..295 | 221 | 22.7 | Plus |
