Clone BS03756 Report

Search the DGRC for BS03756

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:37
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptHsp23-RA
Protein status:BS03756.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03756.3prime Sequence

591 bp (590 high quality bases) assembled on 2005-12-01

> BS03756.3prime
ATGGTCTAGAAAGCTTCTACTTATCGTTGCCATTGTCCTGCTCCACCGCC
TCCTTGGGATTCTCCTTCACATTGAGATGGGCGGGTCCCACCTGCTGGAT
CTGAACGATGCGCTCGTTGCCCTTATCCTCGATTGCCGGTGGCTTGGGCA
CCTTGATGGTCAGGACACCATCGGAGGACAAGGTGGAGGCCACCTTATCA
GCCTCATAACCGGGTGGCAGAGCATAGCGGCGGACAAAGTGACGAGTGAT
GAAGCCATGGTCATCTTCGCGCTCCTCATGGTTGCCCTCCACCAGGACGG
AGTTGTCCTGCACTTTGACCACCAGTTCGCTGGGCTTGAAGTGCGACACA
TCCATGCAGACCTGGAAGCCATCCTTTCCGATTTTCGACACGGCTCCCGA
CGATCCCGACGAGGCGCCCACCTGTTTCTCCAGCTGGCGCAGCTGCTGCT
CCATCGGTCCAACCAGGGCCAAGTAGGGATTCCTCTGGCGCTGGCAGTAG
TAGGGCTCATAGAAGGGCACCATCGACATTCGGCCCAAATCGTCGGCAAG
GCTCAACAACAATGGAATATTTGCCATGTCGACTGATAACT

BS03756.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4463-PA 561 Hsp23-RA 1..561 577..17 2805 100 Minus
CG4466-PA 642 Hsp27-RA 262..304 373..331 165 95.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp23-RB 884 CG4463-RB 117..678 577..16 2810 100 Minus
Hsp23-RA 849 CG4463-RA 117..678 577..16 2810 100 Minus
Hsp26-RB 1010 CG4183-RB 495..807 376..64 350 74.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9381998..9382559 577..16 2810 100 Minus
3L 28110227 3L 9376621..9376933 64..376 335 73.8 Plus
3L 28110227 3L 9384447..9384590 373..230 315 81.2 Minus
Blast to na_te.dros performed on 2015-02-01 09:32:14 has no hits.

BS03756.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:01 Download gff for BS03756.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp23-PA 1..561 17..577 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:48:29 Download gff for BS03756.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4463-PA 1..561 17..577 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:36:54 Download gff for BS03756.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 117..678 16..577 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:02:10 Download gff for BS03756.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 117..678 16..577 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:02:10 Download gff for BS03756.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9381998..9382559 16..577 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:36:54 Download gff for BS03756.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9375098..9375659 16..577 100   Minus

BS03756.5prime Sequence

591 bp (590 high quality bases) assembled on 2005-12-01

> BS03756.5prime
GAAGTTATCAGTCGACATGGCAAATATTCCATTGTTGTTGAGCCTTGCCG
ACGATTTGGGCCGAATGTCGATGGTGCCCTTCTATGAGCCCTACTACTGC
CAGCGCCAGAGGAATCCCTACTTGGCCCTGGTTGGACCGATGGAGCAGCA
GCTGCGCCAGCTGGAGAAACAGGTGGGCGCCTCGTCGGGATCGTCGGGAG
CCGTGTCGAAAATCGGAAAGGATGGCTTCCAGGTCTGCATGGATGTGTCG
CACTTCAAGCCCAGCGAACTGGTGGTCAAAGTGCAGGACAACTCCGTCCT
GGTGGAGGGCAACCATGAGGAGCGCGAAGATGACCATGGCTTCATCACTC
GTCACTTTGTCCGCCGCTATGCTCTGCCACCCGGTTATGAGGCTGATAAG
GTGGCCTCCACCTTGTCCTCCGATGGTGTCCTGACCATCAAGGTGCCCAA
GCCACCGGCAATCGAGGATAAGGGCAACGAGCGCATCGTTCAGATCCAGC
AGGTGGGACCCGCCCATCTCAATGTGAAGGAGAATCCCAAGGAGGCGGTG
GAGCAGGACAATGGCAACGATAAGTAGAAGCTTTCTAGACC

BS03756.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4463-PA 561 Hsp23-RA 1..561 17..577 2805 100 Plus
CG4466-PA 642 Hsp27-RA 262..304 221..263 165 95.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp23-RB 884 CG4463-RB 117..678 17..578 2810 100 Plus
Hsp23-RA 849 CG4463-RA 117..678 17..578 2810 100 Plus
Hsp26-RB 1010 CG4183-RB 495..807 218..530 350 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9381998..9382559 17..578 2810 100 Plus
3L 28110227 3L 9376621..9376933 530..218 335 73.8 Minus
3L 28110227 3L 9384447..9384590 221..364 315 81.2 Plus
Blast to na_te.dros performed on 2015-02-11 17:09:32 has no hits.

BS03756.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:02 Download gff for BS03756.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp23-PA 1..561 17..577 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:48:31 Download gff for BS03756.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4463-PA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:45:39 Download gff for BS03756.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 117..678 17..578 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:11 Download gff for BS03756.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 117..678 17..578 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:11 Download gff for BS03756.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9381998..9382559 17..578 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:45:39 Download gff for BS03756.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9375098..9375659 17..578 100   Plus

BS03756.complete Sequence

593 bp (593 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634763

> BS03756.complete
GAAGTTATCAGTCGACATGGCAAATATTCCATTGTTGTTGAGCCTTGCCG
ACGATTTGGGCCGAATGTCGATGGTGCCCTTCTATGAGCCCTACTACTGC
CAGCGCCAGAGGAATCCCTACTTGGCCCTGGTTGGACCGATGGAGCAGCA
GCTGCGCCAGCTGGAGAAACAGGTGGGCGCCTCGTCGGGATCGTCGGGAG
CCGTGTCGAAAATCGGAAAGGATGGCTTCCAGGTCTGCATGGATGTGTCG
CACTTCAAGCCCAGCGAACTGGTGGTCAAAGTGCAGGACAACTCCGTCCT
GGTGGAGGGCAACCATGAGGAGCGCGAAGATGACCATGGCTTCATCACTC
GTCACTTTGTCCGCCGCTATGCTCTGCCACCCGGTTATGAGGCTGATAAG
GTGGCCTCCACCTTGTCCTCCGATGGTGTCCTGACCATCAAGGTGCCCAA
GCCACCGGCAATCGAGGATAAGGGCAACGAGCGCATCGTTCAGATCCAGC
AGGTGGGACCCGCCCATCTCAATGTGAAGGAGAATCCCAAGGAGGCGGTG
GAGCAGGACAATGGCAACGATAAGTAGAAGCTTTCTAGACCAT

BS03756.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp23-RB 561 CG4463-PB 1..561 17..577 2805 100 Plus
Hsp23-RA 561 CG4463-PA 1..561 17..577 2805 100 Plus
Hsp26-RB 627 CG4183-PB 256..568 218..530 335 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp23-RB 884 CG4463-RB 117..678 17..578 2810 100 Plus
Hsp23-RA 849 CG4463-RA 117..678 17..578 2810 100 Plus
Hsp26-RB 1010 CG4183-RB 495..807 218..530 335 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9381998..9382559 17..578 2810 100 Plus
3L 28110227 3L 9376621..9376933 530..218 335 73.8 Minus
3L 28110227 3L 9384447..9384590 221..364 315 81.2 Plus
Blast to na_te.dros performed on 2014-11-28 00:58:00 has no hits.

BS03756.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:58 Download gff for BS03756.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:52 Download gff for BS03756.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 115..676 17..578 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:17 Download gff for BS03756.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 117..677 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:58 Download gff for BS03756.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 115..676 17..578 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:20 Download gff for BS03756.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 117..677 17..577 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:20 Download gff for BS03756.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9381998..9382558 17..577 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:17 Download gff for BS03756.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9375098..9375658 17..577 100   Plus

BS03756.pep Sequence

Translation from 16 to 576

> BS03756.pep
MANIPLLLSLADDLGRMSMVPFYEPYYCQRQRNPYLALVGPMEQQLRQLE
KQVGASSGSSGAVSKIGKDGFQVCMDVSHFKPSELVVKVQDNSVLVEGNH
EEREDDHGFITRHFVRRYALPPGYEADKVASTLSSDGVLTIKVPKPPAIE
DKGNERIVQIQQVGPAHLNVKENPKEAVEQDNGNDK*

BS03756.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp23-PB 186 CG4463-PB 1..186 1..186 966 100 Plus
Hsp23-PA 186 CG4463-PA 1..186 1..186 966 100 Plus
Hsp26-PB 208 CG4183-PB 80..201 62..183 457 68.9 Plus
Hsp26-PA 208 CG4183-PA 80..201 62..183 457 68.9 Plus
Hsp27-PB 213 CG4466-PB 54..196 29..177 422 57 Plus