Clone Sequence Records
BS03758.3prime Sequence
624 bp (623 high quality bases) assembled on 2005-12-01
> BS03758.3prime
ATGGTCTAGAAAGCTTCTAAATAACTATATCATCGATTTGCTCGTCGTTC
AGGGCGCGCAGATTGCATTTGCATAGGTAGGCCAGAATGCGTTTCTCCGC
CTTAATTCGGTTTGCTTCGCCCAGTCCTTCAAGCAGGGCTTCTATCCTCT
TTTCTGCTTGAGCCACTGGCGTTGCATGGGCAGGATTTGTGGGTGGTGCT
GGTGCAGCTCCCGCAACGGCCAGCTGCTCATCCATGGCCTCCTGGAGCGG
ATCCTCATCATCGTTGACCTCGTCGCTGGATTTCAGTGTGCTCCTACTCA
GATCACCCGAATTTCGGTGATTAATCGGATGGTGGTGATGCTGCAGGAAT
TTCAAATGCGGCAGAAGACTCCAATCGGAGCCAGTGCCTCCGGCCTTTTC
TTTGGCCAGCTCCCGACGCTGTTTGGCCACCAGATGATTCCAACGACTGA
CACAGGCACTAGCTTCTGAATTTAATGAAGTGGCGATGCTGCTCCAGATT
TCCGGATGTCGCTTCTTATGCGCTTCGTAGGGTGCGTTTCTAAGTTCGCG
CTCATAAAGCTTGGGATTAGCCCTAACCAGCTCAATAAGTCGCGTGTCGA
ACTGCGACATGTCGACTGATAACT
BS03758.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-PA | 594 | CG6683-RA | 1..594 | 610..17 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-RA | 990 | CG6683-RA | 75..668 | 610..17 | 2970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8514196..8514643 | 17..464 | 2240 | 100 | Plus |
| 3L | 28110227 | 3L | 8514700..8514847 | 463..610 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:46:15 has no hits.
BS03758.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:04 Download gff for
BS03758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:48:35 Download gff for
BS03758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:03:56 Download gff for
BS03758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 67..675 | 11..620 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:52 Download gff for
BS03758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 67..675 | 11..620 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:52 Download gff for
BS03758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8514189..8514641 | 11..462 | 99 | <- | Plus |
| 3L | 8514700..8514855 | 463..620 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:03:56 Download gff for
BS03758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8507289..8507741 | 11..462 | 99 | <- | Plus |
| arm_3L | 8507800..8507955 | 463..620 | 97 | | Plus |
BS03758.5prime Sequence
624 bp (623 high quality bases) assembled on 2005-11-29
> BS03758.5prime
GAAGTTATCAGTCGACATGTCGCAGTTCGACACGCGACTTATTGAGCTGG
TTAGGGCTAATCCCAAGCTTTATGAGCGCGAACTTAGAAACGCACCCTAC
GAAGCGCATAAGAAGCGACATCCGGAAATCTGGAGCAGCATCGCCACTTC
ATTAAATTCAGAAGCTAGTGCCTGTGTCAGTCGTTGGAATCATCTGGTGG
CCAAACAGCGTCGGGAGCTGGCCAAAGAAAAGGCCGGAGGCACTGGCTCC
GATTGGAGTCTTCTGCCGCATTTGAAATTCCTGCAGCATCACCACCATCC
GATTAATCACCGAAATTCGGGTGATCTGAGTAGGAGCACACTGAAATCCA
GCGACGAGGTCAACGATGATGAGGATCCGCTCCAGGAGGCCATGGATGAG
CAGCTGGCCGTTGCGGGAGCTGCACCAGCACCACCCACAAATCCTGCCCA
TGCAACGCCAGTGGCTCAAGCAGAAAAGAGGATAGAAGCCCTGCTTGAAG
GACTGGGCGAAGCAAACCGAATTAAGGCGGAGAAACGCATTCTGGCCTAC
CTATGCAAATGCAATCTGCGCGCCCTGAACGACGAGCAAATCGATGATAT
AGTTATTTAGAAGCTTTCTAGACC
BS03758.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-PA | 594 | CG6683-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-RA | 990 | CG6683-RA | 75..668 | 17..610 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8514196..8514643 | 610..163 | 2240 | 100 | Minus |
| 3L | 28110227 | 3L | 8514700..8514847 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:27:34 has no hits.
BS03758.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:05 Download gff for
BS03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:48:36 Download gff for
BS03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:44 Download gff for
BS03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 67..675 | 7..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:25 Download gff for
BS03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 67..675 | 7..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:25 Download gff for
BS03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8514189..8514641 | 165..616 | 99 | <- | Minus |
| 3L | 8514700..8514855 | 7..164 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:44 Download gff for
BS03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8507800..8507955 | 7..164 | 97 | | Minus |
| arm_3L | 8507289..8507741 | 165..616 | 99 | <- | Minus |
BS03758.complete Sequence
626 bp (626 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634764
> BS03758.complete
GAAGTTATCAGTCGACATGTCGCAGTTCGACACGCGACTTATTGAGCTGG
TTAGGGCTAATCCCAAGCTTTATGAGCGCGAACTTAGAAACGCACCCTAC
GAAGCGCATAAGAAGCGACATCCGGAAATCTGGAGCAGCATCGCCACTTC
ATTAAATTCAGAAGCTAGTGCCTGTGTCAGTCGTTGGAATCATCTGGTGG
CCAAACAGCGTCGGGAGCTGGCCAAAGAAAAGGCCGGAGGCACTGGCTCC
GATTGGAGTCTTCTGCCGCATTTGAAATTCCTGCAGCATCACCACCATCC
GATTAATCACCGAAATTCGGGTGATCTGAGTAGGAGCACACTGAAATCCA
GCGACGAGGTCAACGATGATGAGGATCCGCTCCAGGAGGCCATGGATGAG
CAGCTGGCCGTTGCGGGAGCTGCACCAGCACCACCCACAAATCCTGCCCA
TGCAACGCCAGTGGCTCAAGCAGAAAAGAGGATAGAAGCCCTGCTTGAAG
GACTGGGCGAAGCAAACCGAATTAAGGCGGAGAAACGCATTCTGGCCTAC
CTATGCAAATGCAATCTGCGCGCCCTGAACGACGAGCAAATCGATGATAT
AGTTATTTAGAAGCTTTCTAGACCAT
BS03758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-RA | 594 | CG6683-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-RA | 990 | CG6683-RA | 75..668 | 17..610 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8514196..8514643 | 610..163 | 2240 | 100 | Minus |
| 3L | 28110227 | 3L | 8514700..8514847 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:25:49 has no hits.
BS03758.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:54 Download gff for
BS03758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 37..645 | 7..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:36 Download gff for
BS03758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 75..668 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:59 Download gff for
BS03758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 37..645 | 7..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:14 Download gff for
BS03758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 75..668 | 17..610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:14 Download gff for
BS03758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8514196..8514641 | 165..610 | 100 | <- | Minus |
| 3L | 8514700..8514847 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:36 Download gff for
BS03758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8507296..8507741 | 165..610 | 100 | <- | Minus |
| arm_3L | 8507800..8507947 | 17..164 | 100 | | Minus |
BS03758.pep Sequence
Translation from 16 to 609
> BS03758.pep
MSQFDTRLIELVRANPKLYERELRNAPYEAHKKRHPEIWSSIATSLNSEA
SACVSRWNHLVAKQRRELAKEKAGGTGSDWSLLPHLKFLQHHHHPINHRN
SGDLSRSTLKSSDEVNDDEDPLQEAMDEQLAVAGAAPAPPTNPAHATPVA
QAEKRIEALLEGLGEANRIKAEKRILAYLCKCNLRALNDEQIDDIVI*
BS03758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-PA | 197 | CG6683-PA | 1..197 | 1..197 | 1027 | 100 | Plus |
| CG9948-PC | 218 | CG9948-PC | 11..218 | 4..197 | 205 | 28.8 | Plus |
| CG9948-PB | 218 | CG9948-PB | 11..218 | 4..197 | 205 | 28.8 | Plus |
| CG9948-PA | 218 | CG9948-PA | 11..218 | 4..197 | 205 | 28.8 | Plus |
