Clone BS03791 Report

Search the DGRC for BS03791

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:37
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG7970-RA
Protein status:BS03791.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03791.3prime Sequence

344 bp (317 high quality bases) assembled on 2005-12-01

> BS03791.3prime
ATGGTCTAGAAAGCTTCTATTTGGCTGCCTCTTTGGCGGCCAGCTTGTCC
TGGAAGCGGCGACGCTTCTGGGCGATGTACACCACCCAGATGAAGGAGAT
GATGGCCATGCTGATGGACCGGAACATCGGGGGCACGTAGGCGAAGTTGA
GGTACACGAACACGGACAGGTACTGCCAGTTGGCCTTCAGCAGAGGCCAG
TAGAGCTTCTCAACATTCTTCAATGCAGTGCTGGGAGACTTGCCCTCGAA
CAGGGCCAAGAAGAACAGGGACAGTGCCTGGTAAATCGGAGCATAGACCA
GTCGCTCGGACAGGAACAGGAAGAATCTTCGGAAGCGCACATCC

BS03791.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7970-PA 576 CG7970-RA 249..576 344..17 1640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7970-RC 1270 CG7970-RC 567..894 344..17 1640 100 Minus
CG7970-RB 900 CG7970-RB 323..650 344..17 1640 100 Minus
CG7970-RA 889 CG7970-RA 312..639 344..17 1640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1653633..1653862 246..17 1150 100 Minus
3L 28110227 3L 1653476..1653576 344..244 505 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:31:13 has no hits.

BS03791.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:52 Download gff for BS03791.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7970-PA 249..576 17..344 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:38 Download gff for BS03791.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7970-PA 249..576 17..344 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:47:43 Download gff for BS03791.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7970-RA 312..642 12..344 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:00:59 Download gff for BS03791.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7970-RA 312..642 12..344 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:00:59 Download gff for BS03791.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1653476..1653575 245..344 100 -> Minus
3L 1653635..1653865 12..244 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:47:43 Download gff for BS03791.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1653476..1653575 245..344 100 -> Minus
arm_3L 1653635..1653865 12..244 99   Minus

BS03791.5prime Sequence

283 bp (263 high quality bases) assembled on 2005-12-01

> BS03791.5prime
GAAGTTATCAGTCGACATGGTTCTCTCCAAGCCCCTGTACTCGCTCTTCG
GCACTTATCTGGAGCAGCTCTTCAACCACCCGGTCCGCACCAAATCCATT
ACGGCATGCGTTCTGGCCACCTCGGCTAATGTCACCTCCCAGCGTTTGGC
GGGCGCCAAGACCCTCAACCAGCAGAGCGTATTCGCCTACGGACTCTTTG
GACTGATCTTCGGCGGTAGTGTGCCGCACTACTTCTACACGACGGTGGAG
CGACTCTTCAGCCAGGATGTGCGCTTCCGAAAA

BS03791.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7970-PA 576 CG7970-RA 1..265 17..281 1325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7970-RC 1270 CG7970-RC 317..583 15..281 1335 100 Plus
CG7970-RB 900 CG7970-RB 73..339 15..281 1335 100 Plus
CG7970-RA 889 CG7970-RA 62..328 15..281 1335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1653317..1653492 106..281 880 100 Plus
3L 28110227 3L 1653164..1653254 15..105 455 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:48:44 has no hits.

BS03791.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:53 Download gff for BS03791.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7970-PA 1..263 17..279 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:39 Download gff for BS03791.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7970-PA 1..263 17..279 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:17:25 Download gff for BS03791.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7970-RA 62..326 15..279 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:13 Download gff for BS03791.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7970-RA 62..326 15..279 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:13 Download gff for BS03791.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1653164..1653254 15..105 100 -> Plus
3L 1653317..1653490 106..279 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:17:25 Download gff for BS03791.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1653164..1653254 15..105 100 -> Plus
arm_3L 1653317..1653490 106..279 100   Plus

BS03791.complete Sequence

608 bp assembled on 2007-10-17

GenBank Submission: FJ634766

> BS03791.complete
GAAGTTATCAGTCGACATGGTTCTCTCCAAGCCCCTGTACTCGCTCTTCG
GCACTTATCTGGAGCAGCTCTTCAACCACCCGGTCCGCACCAAATCCATT
ACGGCATGCGTTCTGGCCACCTCGGCTAATGTCACCTCCCAGCGTTTGGC
GGGCGCCAAGACCCTCAACCAGCAGAGCGTATTCGCCTACGGACTCTTTG
GACTGATCTTCGGCGGTAGTGTGCCGCACTACTTCTACACGACGGTGGAG
CGACTCTTCAGCCAGGATGTGCGCTTCCGAAGATTCTTCCTGTTCCTGTC
CGAGCGACTGGTCTATGCTCCGATTTACCAGGCACTGTCCCTGTTCTTCT
TGGCCCTGTTCGAGGGCAAGTCTCCCAGCACTGCATTGAAGAATGTTGAG
AAGCTCTACTGGCCTCTGCTGAAGGCCAACTGGCAGTACCTGTCCGTGTT
CGTGTACCTCAACTTCGCCTACGTGCCCCCGATGTTCCGGTCCATCAGCA
TGGCCATCATCTCCTTCATCTGGGTGGTGTACATCGCCCAGAAGCGTCGC
CGCTTCCAGGACAAGCTGGCCGCCAAAGAGGCAGCCAAATAGAAGCTTTC
TAGACCAT

BS03791.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7970-RC 768 CG7970-PC 191..768 15..592 2890 100 Plus
CG7970-RB 576 CG7970-PB 1..576 17..592 2880 100 Plus
CG7970-RA 576 CG7970-PA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7970-RC 1270 CG7970-RC 317..894 15..592 2890 100 Plus
CG7970-RB 900 CG7970-RB 73..650 15..592 2890 100 Plus
CG7970-RA 889 CG7970-RA 62..639 15..592 2890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1653317..1653576 106..365 1300 100 Plus
3L 28110227 3L 1653633..1653862 363..592 1150 100 Plus
3L 28110227 3L 1653164..1653254 15..105 455 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:25:39 has no hits.

BS03791.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:27 Download gff for BS03791.complete
Subject Subject Range Query Range Percent Splice Strand
CG7970-RA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:29 Download gff for BS03791.complete
Subject Subject Range Query Range Percent Splice Strand
CG7970-RA 62..642 15..597 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:44 Download gff for BS03791.complete
Subject Subject Range Query Range Percent Splice Strand
CG7970-RA 64..633 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:00 Download gff for BS03791.complete
Subject Subject Range Query Range Percent Splice Strand
CG7970-RA 64..633 17..586 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:02 Download gff for BS03791.complete
Subject Subject Range Query Range Percent Splice Strand
CG7970-RA 64..633 17..586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:02 Download gff for BS03791.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1653635..1653856 365..586 100   Plus
3L 1653317..1653575 106..364 100 -> Plus
3L 1653166..1653254 17..105 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:44 Download gff for BS03791.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1653166..1653254 17..105 100 -> Plus
arm_3L 1653317..1653575 106..364 100 -> Plus
arm_3L 1653635..1653856 365..586 100   Plus

BS03791.pep Sequence

Translation from 16 to 591

> BS03791.pep
MVLSKPLYSLFGTYLEQLFNHPVRTKSITACVLATSANVTSQRLAGAKTL
NQQSVFAYGLFGLIFGGSVPHYFYTTVERLFSQDVRFRRFFLFLSERLVY
APIYQALSLFFLALFEGKSPSTALKNVEKLYWPLLKANWQYLSVFVYLNF
AYVPPMFRSISMAIISFIWVVYIAQKRRRFQDKLAAKEAAK*

BS03791.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7970-PB 191 CG7970-PB 1..191 1..191 975 100 Plus
CG7970-PA 191 CG7970-PA 1..191 1..191 975 100 Plus
CG7970-PC 255 CG7970-PC 65..255 1..191 975 100 Plus