Clone Sequence Records
BS03791.3prime Sequence
344 bp (317 high quality bases) assembled on 2005-12-01
> BS03791.3prime
ATGGTCTAGAAAGCTTCTATTTGGCTGCCTCTTTGGCGGCCAGCTTGTCC
TGGAAGCGGCGACGCTTCTGGGCGATGTACACCACCCAGATGAAGGAGAT
GATGGCCATGCTGATGGACCGGAACATCGGGGGCACGTAGGCGAAGTTGA
GGTACACGAACACGGACAGGTACTGCCAGTTGGCCTTCAGCAGAGGCCAG
TAGAGCTTCTCAACATTCTTCAATGCAGTGCTGGGAGACTTGCCCTCGAA
CAGGGCCAAGAAGAACAGGGACAGTGCCTGGTAAATCGGAGCATAGACCA
GTCGCTCGGACAGGAACAGGAAGAATCTTCGGAAGCGCACATCC
BS03791.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7970-PA | 576 | CG7970-RA | 249..576 | 344..17 | 1640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7970-RC | 1270 | CG7970-RC | 567..894 | 344..17 | 1640 | 100 | Minus |
CG7970-RB | 900 | CG7970-RB | 323..650 | 344..17 | 1640 | 100 | Minus |
CG7970-RA | 889 | CG7970-RA | 312..639 | 344..17 | 1640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1653633..1653862 | 246..17 | 1150 | 100 | Minus |
3L | 28110227 | 3L | 1653476..1653576 | 344..244 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:31:13 has no hits.
BS03791.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:52 Download gff for
BS03791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-PA | 249..576 | 17..344 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:38 Download gff for
BS03791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-PA | 249..576 | 17..344 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:47:43 Download gff for
BS03791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-RA | 312..642 | 12..344 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:00:59 Download gff for
BS03791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-RA | 312..642 | 12..344 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:00:59 Download gff for
BS03791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1653476..1653575 | 245..344 | 100 | -> | Minus |
3L | 1653635..1653865 | 12..244 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:47:43 Download gff for
BS03791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1653476..1653575 | 245..344 | 100 | -> | Minus |
arm_3L | 1653635..1653865 | 12..244 | 99 | | Minus |
BS03791.5prime Sequence
283 bp (263 high quality bases) assembled on 2005-12-01
> BS03791.5prime
GAAGTTATCAGTCGACATGGTTCTCTCCAAGCCCCTGTACTCGCTCTTCG
GCACTTATCTGGAGCAGCTCTTCAACCACCCGGTCCGCACCAAATCCATT
ACGGCATGCGTTCTGGCCACCTCGGCTAATGTCACCTCCCAGCGTTTGGC
GGGCGCCAAGACCCTCAACCAGCAGAGCGTATTCGCCTACGGACTCTTTG
GACTGATCTTCGGCGGTAGTGTGCCGCACTACTTCTACACGACGGTGGAG
CGACTCTTCAGCCAGGATGTGCGCTTCCGAAAA
BS03791.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7970-PA | 576 | CG7970-RA | 1..265 | 17..281 | 1325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7970-RC | 1270 | CG7970-RC | 317..583 | 15..281 | 1335 | 100 | Plus |
CG7970-RB | 900 | CG7970-RB | 73..339 | 15..281 | 1335 | 100 | Plus |
CG7970-RA | 889 | CG7970-RA | 62..328 | 15..281 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1653317..1653492 | 106..281 | 880 | 100 | Plus |
3L | 28110227 | 3L | 1653164..1653254 | 15..105 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:48:44 has no hits.
BS03791.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:53 Download gff for
BS03791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-PA | 1..263 | 17..279 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:39 Download gff for
BS03791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-PA | 1..263 | 17..279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:17:25 Download gff for
BS03791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-RA | 62..326 | 15..279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:13 Download gff for
BS03791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-RA | 62..326 | 15..279 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:13 Download gff for
BS03791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1653164..1653254 | 15..105 | 100 | -> | Plus |
3L | 1653317..1653490 | 106..279 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:17:25 Download gff for
BS03791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1653164..1653254 | 15..105 | 100 | -> | Plus |
arm_3L | 1653317..1653490 | 106..279 | 100 | | Plus |
BS03791.complete Sequence
608 bp assembled on 2007-10-17
GenBank Submission: FJ634766
> BS03791.complete
GAAGTTATCAGTCGACATGGTTCTCTCCAAGCCCCTGTACTCGCTCTTCG
GCACTTATCTGGAGCAGCTCTTCAACCACCCGGTCCGCACCAAATCCATT
ACGGCATGCGTTCTGGCCACCTCGGCTAATGTCACCTCCCAGCGTTTGGC
GGGCGCCAAGACCCTCAACCAGCAGAGCGTATTCGCCTACGGACTCTTTG
GACTGATCTTCGGCGGTAGTGTGCCGCACTACTTCTACACGACGGTGGAG
CGACTCTTCAGCCAGGATGTGCGCTTCCGAAGATTCTTCCTGTTCCTGTC
CGAGCGACTGGTCTATGCTCCGATTTACCAGGCACTGTCCCTGTTCTTCT
TGGCCCTGTTCGAGGGCAAGTCTCCCAGCACTGCATTGAAGAATGTTGAG
AAGCTCTACTGGCCTCTGCTGAAGGCCAACTGGCAGTACCTGTCCGTGTT
CGTGTACCTCAACTTCGCCTACGTGCCCCCGATGTTCCGGTCCATCAGCA
TGGCCATCATCTCCTTCATCTGGGTGGTGTACATCGCCCAGAAGCGTCGC
CGCTTCCAGGACAAGCTGGCCGCCAAAGAGGCAGCCAAATAGAAGCTTTC
TAGACCAT
BS03791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7970-RC | 768 | CG7970-PC | 191..768 | 15..592 | 2890 | 100 | Plus |
CG7970-RB | 576 | CG7970-PB | 1..576 | 17..592 | 2880 | 100 | Plus |
CG7970-RA | 576 | CG7970-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7970-RC | 1270 | CG7970-RC | 317..894 | 15..592 | 2890 | 100 | Plus |
CG7970-RB | 900 | CG7970-RB | 73..650 | 15..592 | 2890 | 100 | Plus |
CG7970-RA | 889 | CG7970-RA | 62..639 | 15..592 | 2890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1653317..1653576 | 106..365 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 1653633..1653862 | 363..592 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 1653164..1653254 | 15..105 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:25:39 has no hits.
BS03791.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:27 Download gff for
BS03791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:29 Download gff for
BS03791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-RA | 62..642 | 15..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:44 Download gff for
BS03791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-RA | 64..633 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:00 Download gff for
BS03791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-RA | 64..633 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:02 Download gff for
BS03791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7970-RA | 64..633 | 17..586 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:02 Download gff for
BS03791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1653635..1653856 | 365..586 | 100 | | Plus |
3L | 1653317..1653575 | 106..364 | 100 | -> | Plus |
3L | 1653166..1653254 | 17..105 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:44 Download gff for
BS03791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1653166..1653254 | 17..105 | 100 | -> | Plus |
arm_3L | 1653317..1653575 | 106..364 | 100 | -> | Plus |
arm_3L | 1653635..1653856 | 365..586 | 100 | | Plus |
BS03791.pep Sequence
Translation from 16 to 591
> BS03791.pep
MVLSKPLYSLFGTYLEQLFNHPVRTKSITACVLATSANVTSQRLAGAKTL
NQQSVFAYGLFGLIFGGSVPHYFYTTVERLFSQDVRFRRFFLFLSERLVY
APIYQALSLFFLALFEGKSPSTALKNVEKLYWPLLKANWQYLSVFVYLNF
AYVPPMFRSISMAIISFIWVVYIAQKRRRFQDKLAAKEAAK*
BS03791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7970-PB | 191 | CG7970-PB | 1..191 | 1..191 | 975 | 100 | Plus |
CG7970-PA | 191 | CG7970-PA | 1..191 | 1..191 | 975 | 100 | Plus |
CG7970-PC | 255 | CG7970-PC | 65..255 | 1..191 | 975 | 100 | Plus |