Clone Sequence Records
BS03792.3prime Sequence
600 bp (599 high quality bases) assembled on 2005-12-01
> BS03792.3prime
ATGGTCTAGAAAGCTTCTAGTTGAGAAACCGTATGGACATCTTCTGATCC
ACGTCGGTGCGGTCCAGAGCTTTGCAGAAGTCCTCGAACGAGATCTTGCC
CTGGCAGCACAGGTCCGCCTCCAGGATCGTCCTCTCCGCAATGCTGACCA
ACTGGTCCTGGCTAATGTTCGCCCCGACCATCATGTGCAGGATGGAGAGC
AGCTCGTCTCTGCTGATCACACCATCGTCATCCAGATCGTACATCTTGAA
GGCGAACTTCAGCTTCTCCTCCCGGCTGTTGAGCTTACTTTGCTTGTTAT
CCCTCAGCGGCCGGAAGTGGGCCAGGACGTTCATGAACTGCCGGAAGTTC
ACCCGATCGTCGTTGCTCTCAGCGAAAAAGGAATGAACTATCCGCTCGCA
CAGCGGATTAATGGCCAGTTCCGGGATACGCATCAGATCCTCCCGGGACA
AGGTTCCGCAATCATTGCGATCCAAGGAGGTGAAGCGCGAGTAAAGTCGC
TCGATTTGGTTGGGGGTGAAGCCAGTCTCCTCCTGGATTTGCGCGATCTC
CTCGTTCCGCAGGAAAAGCGACGACTTATTGCCCATGTCGACTGATAACT
BS03792.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2185-PA | 570 | CG2185-RA | 1..570 | 586..17 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elm-RB | 1321 | CG2185-RB | 139..709 | 587..17 | 2855 | 100 | Minus |
elm-RA | 1128 | CG2185-RA | 139..709 | 587..17 | 2855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5653252..5653754 | 17..519 | 2515 | 100 | Plus |
3R | 32079331 | 3R | 5654656..5654723 | 520..587 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:03:14 has no hits.
BS03792.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:55 Download gff for
BS03792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2185-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:40 Download gff for
BS03792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2185-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:10:55 Download gff for
BS03792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elm-RA | 134..716 | 8..592 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:03 Download gff for
BS03792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elm-RA | 134..716 | 8..592 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:03 Download gff for
BS03792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5653245..5653754 | 8..519 | 99 | <- | Plus |
3R | 5654656..5654728 | 520..592 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:10:55 Download gff for
BS03792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1478967..1479476 | 8..519 | 99 | <- | Plus |
arm_3R | 1480378..1480450 | 520..592 | 97 | | Plus |
BS03792.5prime Sequence
600 bp (599 high quality bases) assembled on 2005-11-29
> BS03792.5prime
GAAGTTATCAGTCGACATGGGCAATAAGTCGTCGCTTTTCCTGCGGAACG
AGGAGATCGCGCAAATCCAGGAGGAGACTGGCTTCACCCCCAACCAAATC
GAGCGACTTTACTCGCGCTTCACCTCCTTGGATCGCAATGATTGCGGAAC
CTTGTCCCGGGAGGATCTGATGCGTATCCCGGAACTGGCCATTAATCCGC
TGTGCGAGCGGATAGTTCATTCCTTTTTCGCTGAGAGCAACGACGATCGG
GTGAACTTCCGGCAGTTCATGAACGTCCTGGCCCACTTCCGGCCGCTGAG
GGATAACAAGCAAAGTAAGCTCAACAGCCGGGAGGAGAAGCTGAAGTTCG
CCTTCAAGATGTACGATCTGGATGACGATGGTGTGATCAGCAGAGACGAG
CTGCTCTCCATCCTGCACATGATGGTCGGGGCGAACATTAGCCAGGACCA
GTTGGTCAGCATTGCGGAGAGGACGATCCTGGAGGCGGACCTGTGCTGCC
AGGGCAAGATCTCGTTCGAGGACTTCTGCAAAGCTCTGGACCGCACCGAC
GTGGATCAGAAGATGTCCATACGGTTTCTCAACTAGAAGCTTTCTAGACC
BS03792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2185-PA | 570 | CG2185-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elm-RB | 1321 | CG2185-RB | 139..709 | 16..586 | 2855 | 100 | Plus |
elm-RA | 1128 | CG2185-RA | 139..709 | 16..586 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5653252..5653754 | 586..84 | 2515 | 100 | Minus |
3R | 32079331 | 3R | 5654656..5654723 | 83..16 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:23:33 has no hits.
BS03792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:56 Download gff for
BS03792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2185-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:42 Download gff for
BS03792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2185-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:16 Download gff for
BS03792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elm-RA | 134..716 | 11..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:14 Download gff for
BS03792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elm-RA | 134..716 | 11..595 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:14 Download gff for
BS03792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5653245..5653754 | 84..595 | 99 | <- | Minus |
3R | 5654656..5654728 | 11..83 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:16 Download gff for
BS03792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1478967..1479476 | 84..595 | 99 | <- | Minus |
arm_3R | 1480378..1480450 | 11..83 | 97 | | Minus |
BS03792.complete Sequence
602 bp (602 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634767
> BS03792.complete
GAAGTTATCAGTCGACATGGGCAATAAGTCGTCGCTTTTCCTGCGGAACG
AGGAGATCGCGCAAATCCAGGAGGAGACTGGCTTCACCCCCAACCAAATC
GAGCGACTTTACTCGCGCTTCACCTCCTTGGATCGCAATGATTGCGGAAC
CTTGTCCCGGGAGGATCTGATGCGTATCCCGGAACTGGCCATTAATCCGC
TGTGCGAGCGGATAGTTCATTCCTTTTTCGCTGAGAGCAACGACGATCGG
GTGAACTTCCGGCAGTTCATGAACGTCCTGGCCCACTTCCGGCCGCTGAG
GGATAACAAGCAAAGTAAGCTCAACAGCCGGGAGGAGAAGCTGAAGTTCG
CCTTCAAGATGTACGATCTGGATGACGATGGTGTGATCAGCAGAGACGAG
CTGCTCTCCATCCTGCACATGATGGTCGGGGCGAACATTAGCCAGGACCA
GTTGGTCAGCATTGCGGAGAGGACGATCCTGGAGGCGGACCTGTGCTGCC
AGGGCAAGATCTCGTTCGAGGACTTCTGCAAAGCTCTGGACCGCACCGAC
GTGGATCAGAAGATGTCCATACGGTTTCTCAACTAGAAGCTTTCTAGACC
AT
BS03792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elm-RB | 570 | CG2185-PB | 1..570 | 17..586 | 2850 | 100 | Plus |
elm-RA | 570 | CG2185-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elm-RB | 1321 | CG2185-RB | 139..709 | 16..586 | 2855 | 100 | Plus |
elm-RA | 1128 | CG2185-RA | 139..709 | 16..586 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5653252..5653754 | 586..84 | 2515 | 100 | Minus |
3R | 32079331 | 3R | 5654656..5654723 | 83..16 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:58:05 has no hits.
BS03792.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:03 Download gff for
BS03792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2185-RA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:55 Download gff for
BS03792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2185-RA | 164..746 | 11..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:20 Download gff for
BS03792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elm-RA | 140..709 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:04 Download gff for
BS03792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2185-RA | 164..746 | 11..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:21 Download gff for
BS03792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elm-RA | 140..709 | 17..586 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:21 Download gff for
BS03792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5653252..5653754 | 84..586 | 100 | <- | Minus |
3R | 5654656..5654722 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:20 Download gff for
BS03792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1478974..1479476 | 84..586 | 100 | <- | Minus |
arm_3R | 1480378..1480444 | 17..83 | 100 | | Minus |
BS03792.pep Sequence
Translation from 16 to 585
> BS03792.pep
MGNKSSLFLRNEEIAQIQEETGFTPNQIERLYSRFTSLDRNDCGTLSRED
LMRIPELAINPLCERIVHSFFAESNDDRVNFRQFMNVLAHFRPLRDNKQS
KLNSREEKLKFAFKMYDLDDDGVISRDELLSILHMMVGANISQDQLVSIA
ERTILEADLCCQGKISFEDFCKALDRTDVDQKMSIRFLN*
BS03792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elm-PB | 189 | CG2185-PB | 1..189 | 1..189 | 969 | 100 | Plus |
elm-PA | 189 | CG2185-PA | 1..189 | 1..189 | 969 | 100 | Plus |
CanB-PB | 170 | CG4209-PB | 1..168 | 1..185 | 311 | 38.9 | Plus |
CanB-PA | 170 | CG4209-PA | 1..168 | 1..185 | 311 | 38.9 | Plus |
CanB2-PB | 170 | CG11217-PB | 1..168 | 1..185 | 308 | 38.9 | Plus |