Clone BS03792 Report

Search the DGRC for BS03792

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:37
Well:92
Vector:pDNR-Dual
Associated Gene/Transcriptelm-RA
Protein status:BS03792.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03792.3prime Sequence

600 bp (599 high quality bases) assembled on 2005-12-01

> BS03792.3prime
ATGGTCTAGAAAGCTTCTAGTTGAGAAACCGTATGGACATCTTCTGATCC
ACGTCGGTGCGGTCCAGAGCTTTGCAGAAGTCCTCGAACGAGATCTTGCC
CTGGCAGCACAGGTCCGCCTCCAGGATCGTCCTCTCCGCAATGCTGACCA
ACTGGTCCTGGCTAATGTTCGCCCCGACCATCATGTGCAGGATGGAGAGC
AGCTCGTCTCTGCTGATCACACCATCGTCATCCAGATCGTACATCTTGAA
GGCGAACTTCAGCTTCTCCTCCCGGCTGTTGAGCTTACTTTGCTTGTTAT
CCCTCAGCGGCCGGAAGTGGGCCAGGACGTTCATGAACTGCCGGAAGTTC
ACCCGATCGTCGTTGCTCTCAGCGAAAAAGGAATGAACTATCCGCTCGCA
CAGCGGATTAATGGCCAGTTCCGGGATACGCATCAGATCCTCCCGGGACA
AGGTTCCGCAATCATTGCGATCCAAGGAGGTGAAGCGCGAGTAAAGTCGC
TCGATTTGGTTGGGGGTGAAGCCAGTCTCCTCCTGGATTTGCGCGATCTC
CTCGTTCCGCAGGAAAAGCGACGACTTATTGCCCATGTCGACTGATAACT

BS03792.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2185-PA 570 CG2185-RA 1..570 586..17 2850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
elm-RB 1321 CG2185-RB 139..709 587..17 2855 100 Minus
elm-RA 1128 CG2185-RA 139..709 587..17 2855 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5653252..5653754 17..519 2515 100 Plus
3R 32079331 3R 5654656..5654723 520..587 340 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:03:14 has no hits.

BS03792.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:55 Download gff for BS03792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2185-PA 1..570 17..586 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:40 Download gff for BS03792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2185-PA 1..570 17..586 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:10:55 Download gff for BS03792.3prime
Subject Subject Range Query Range Percent Splice Strand
elm-RA 134..716 8..592 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:03 Download gff for BS03792.3prime
Subject Subject Range Query Range Percent Splice Strand
elm-RA 134..716 8..592 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:03 Download gff for BS03792.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5653245..5653754 8..519 99 <- Plus
3R 5654656..5654728 520..592 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:10:55 Download gff for BS03792.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1478967..1479476 8..519 99 <- Plus
arm_3R 1480378..1480450 520..592 97   Plus

BS03792.5prime Sequence

600 bp (599 high quality bases) assembled on 2005-11-29

> BS03792.5prime
GAAGTTATCAGTCGACATGGGCAATAAGTCGTCGCTTTTCCTGCGGAACG
AGGAGATCGCGCAAATCCAGGAGGAGACTGGCTTCACCCCCAACCAAATC
GAGCGACTTTACTCGCGCTTCACCTCCTTGGATCGCAATGATTGCGGAAC
CTTGTCCCGGGAGGATCTGATGCGTATCCCGGAACTGGCCATTAATCCGC
TGTGCGAGCGGATAGTTCATTCCTTTTTCGCTGAGAGCAACGACGATCGG
GTGAACTTCCGGCAGTTCATGAACGTCCTGGCCCACTTCCGGCCGCTGAG
GGATAACAAGCAAAGTAAGCTCAACAGCCGGGAGGAGAAGCTGAAGTTCG
CCTTCAAGATGTACGATCTGGATGACGATGGTGTGATCAGCAGAGACGAG
CTGCTCTCCATCCTGCACATGATGGTCGGGGCGAACATTAGCCAGGACCA
GTTGGTCAGCATTGCGGAGAGGACGATCCTGGAGGCGGACCTGTGCTGCC
AGGGCAAGATCTCGTTCGAGGACTTCTGCAAAGCTCTGGACCGCACCGAC
GTGGATCAGAAGATGTCCATACGGTTTCTCAACTAGAAGCTTTCTAGACC

BS03792.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2185-PA 570 CG2185-RA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
elm-RB 1321 CG2185-RB 139..709 16..586 2855 100 Plus
elm-RA 1128 CG2185-RA 139..709 16..586 2855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5653252..5653754 586..84 2515 100 Minus
3R 32079331 3R 5654656..5654723 83..16 340 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:23:33 has no hits.

BS03792.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:56 Download gff for BS03792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2185-PA 1..570 17..586 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:42 Download gff for BS03792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2185-PA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:16 Download gff for BS03792.5prime
Subject Subject Range Query Range Percent Splice Strand
elm-RA 134..716 11..595 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:14 Download gff for BS03792.5prime
Subject Subject Range Query Range Percent Splice Strand
elm-RA 134..716 11..595 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:14 Download gff for BS03792.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5653245..5653754 84..595 99 <- Minus
3R 5654656..5654728 11..83 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:16 Download gff for BS03792.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1478967..1479476 84..595 99 <- Minus
arm_3R 1480378..1480450 11..83 97   Minus

BS03792.complete Sequence

602 bp (602 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634767

> BS03792.complete
GAAGTTATCAGTCGACATGGGCAATAAGTCGTCGCTTTTCCTGCGGAACG
AGGAGATCGCGCAAATCCAGGAGGAGACTGGCTTCACCCCCAACCAAATC
GAGCGACTTTACTCGCGCTTCACCTCCTTGGATCGCAATGATTGCGGAAC
CTTGTCCCGGGAGGATCTGATGCGTATCCCGGAACTGGCCATTAATCCGC
TGTGCGAGCGGATAGTTCATTCCTTTTTCGCTGAGAGCAACGACGATCGG
GTGAACTTCCGGCAGTTCATGAACGTCCTGGCCCACTTCCGGCCGCTGAG
GGATAACAAGCAAAGTAAGCTCAACAGCCGGGAGGAGAAGCTGAAGTTCG
CCTTCAAGATGTACGATCTGGATGACGATGGTGTGATCAGCAGAGACGAG
CTGCTCTCCATCCTGCACATGATGGTCGGGGCGAACATTAGCCAGGACCA
GTTGGTCAGCATTGCGGAGAGGACGATCCTGGAGGCGGACCTGTGCTGCC
AGGGCAAGATCTCGTTCGAGGACTTCTGCAAAGCTCTGGACCGCACCGAC
GTGGATCAGAAGATGTCCATACGGTTTCTCAACTAGAAGCTTTCTAGACC
AT

BS03792.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
elm-RB 570 CG2185-PB 1..570 17..586 2850 100 Plus
elm-RA 570 CG2185-PA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
elm-RB 1321 CG2185-RB 139..709 16..586 2855 100 Plus
elm-RA 1128 CG2185-RA 139..709 16..586 2855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5653252..5653754 586..84 2515 100 Minus
3R 32079331 3R 5654656..5654723 83..16 340 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:58:05 has no hits.

BS03792.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:03 Download gff for BS03792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2185-RA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:55 Download gff for BS03792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2185-RA 164..746 11..595 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:20 Download gff for BS03792.complete
Subject Subject Range Query Range Percent Splice Strand
elm-RA 140..709 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:04 Download gff for BS03792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2185-RA 164..746 11..595 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:21 Download gff for BS03792.complete
Subject Subject Range Query Range Percent Splice Strand
elm-RA 140..709 17..586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:21 Download gff for BS03792.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5653252..5653754 84..586 100 <- Minus
3R 5654656..5654722 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:20 Download gff for BS03792.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1478974..1479476 84..586 100 <- Minus
arm_3R 1480378..1480444 17..83 100   Minus

BS03792.pep Sequence

Translation from 16 to 585

> BS03792.pep
MGNKSSLFLRNEEIAQIQEETGFTPNQIERLYSRFTSLDRNDCGTLSRED
LMRIPELAINPLCERIVHSFFAESNDDRVNFRQFMNVLAHFRPLRDNKQS
KLNSREEKLKFAFKMYDLDDDGVISRDELLSILHMMVGANISQDQLVSIA
ERTILEADLCCQGKISFEDFCKALDRTDVDQKMSIRFLN*

BS03792.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
elm-PB 189 CG2185-PB 1..189 1..189 969 100 Plus
elm-PA 189 CG2185-PA 1..189 1..189 969 100 Plus
CanB-PB 170 CG4209-PB 1..168 1..185 311 38.9 Plus
CanB-PA 170 CG4209-PA 1..168 1..185 311 38.9 Plus
CanB2-PB 170 CG11217-PB 1..168 1..185 308 38.9 Plus