Clone Sequence Records
BS03793.3prime Sequence
805 bp (804 high quality bases) assembled on 2005-12-01
> BS03793.3prime
ATGGTCTAGAAAGCTTTCACTTCTTATTCGCTCGCTGTTCATACTTTTCC
TCAATGAACTTGAACACGGAATCGATGGCCGAGTAAGAGGTCCATTCGTG
CTTAGTGTGGCCAGCGGAAATCCTCCGGATGCTGCTCTTTGACTGTGAAA
CGGGTGTGTCTAAGGGTGTGTTGCTGGCAACCCAATCGCAGGCCACATCG
CACAGGTACTCCTTGTTCTTCGCTTGGGGACTTCCCATGGCGGCATCAGT
GAAGGCAATGGCAAAAACGGATTCTTTAAAGAAATCCGGAAACCGCTCCA
CCAAATCAAGAGTAAGACTGCCACCATAACTGTGGGCCACAATGGCCACA
CTCTCGGGTTTCGCGGGCAATACAATATTCTTCCACACATATTTAACGTG
CTCTACGGACGTATTGACGCCCTTGATGGGATTCTCCTTACCATTGTAGA
ATCGTGTGCAATCGTTGGCATTGGTGATGAGGAGATCGTATCCCAGTTTT
TGGGCCTGTCGCACATAAGGCAGCTGGGTACCGTGGTCCAAGGAATTGTT
AATAATTAAACTTCTGGCCCACTGTCCGGCTTTAACGTATCCACTGCCAT
GGATGAGGACTAGCAACTTTTTGGACTGCGACAGCTTTGCCGGTTGCGAG
AATACAAACGAAGACCGCTCTGGAGGCTGGTCAAAAGGGATGTAGGTGCG
ACTAAGACCGTTTTTCTCCAGCAAAGCGTAGACAATTTCTGGGATTTGGT
TGGCTAGCTTCTGGTAGTGCTTCTCGTTTTCGGCGGCGTCGTCGCTGACG
TTGTA
BS03793.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-PA | 978 | CG10038-RA | 190..978 | 805..17 | 3945 | 100 | Minus |
CG10038-PB | 930 | CG10038-RB | 142..930 | 805..17 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-RB | 1134 | CG10038-RB | 253..1045 | 805..13 | 3950 | 99.9 | Minus |
CG10038-RA | 1212 | CG10038-RA | 331..1123 | 805..13 | 3950 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12349076..12349375 | 13..312 | 1455 | 99 | Plus |
3R | 32079331 | 3R | 12349418..12349682 | 298..562 | 1325 | 100 | Plus |
3R | 32079331 | 3R | 12349795..12349982 | 561..748 | 940 | 100 | Plus |
3R | 32079331 | 3R | 12350195..12350251 | 749..805 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:31:44 has no hits.
BS03793.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:57 Download gff for
BS03793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-PB | 143..930 | 17..804 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:43 Download gff for
BS03793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-PB | 143..930 | 17..804 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:36:48 Download gff for
BS03793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 297..1088 | 13..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:02:05 Download gff for
BS03793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 332..1123 | 13..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:02:05 Download gff for
BS03793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12349076..12349364 | 13..301 | 99 | <- | Plus |
3R | 12349422..12349680 | 302..560 | 100 | <- | Plus |
3R | 12349795..12349982 | 561..748 | 100 | <- | Plus |
3R | 12350195..12350250 | 749..804 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:36:48 Download gff for
BS03793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8174798..8175086 | 13..301 | 99 | <- | Plus |
arm_3R | 8175144..8175402 | 302..560 | 100 | <- | Plus |
arm_3R | 8175517..8175704 | 561..748 | 100 | <- | Plus |
arm_3R | 8175917..8175972 | 749..804 | 100 | | Plus |
BS03793.5prime Sequence
931 bp (789 high quality bases) assembled on 2005-11-29
> BS03793.5prime
GAAGTTATCAGTCGACATGTGGTCTAGGCTTATTCAAATATTTCGACCCC
TCAGAAGTTTTCGAATGTCGCACTCACCGCCGCCGGCTAGCAATTGCGAG
GAGGCTCTCATCCAGCTGAAAAACTTTGGATATGCATTCGATGGAGAAGG
AGTGCTGCGCAAAGTCGATCCCGCCACTGGGGAGCCTGGCAAGGAACTCT
TTTCCTACAACGTCAGCGACGACGCCGCCGAAAACGAGAAGCACTACCAG
AAGCTAGCCAACCAAATCCCAGAAATTGTCTACGCTTTGCTGGAGAAAAA
CGGTCTTAGTCGCACCTACATCCCTTTTGACCAGCCTCCAGAGCGGTCTT
CGTTTGTATTCTCGCAACCGGCAAAGCTGTCGCAGTCCAAAAAGTTGCTA
GTCCTCATCCATGGCAGTGGATACGTTAAAGCCGGACAGTGGGCCAGAAG
TTTAATTATTAACAATTCCTTGGACCACGGTACCCAGCTGCCTTATGTGC
GACAGGCCCAAAAACTGGGATACGATCTCCTCATCACCAATGCCAACGAT
TGCACACGATTCTACAATGGTAAGGAGAATCCCATCAAGGGCGTCAATAC
GTCCGTAGAGCACGTTAAATATGTGTGGAAGAATATTGTATTGCCCGCGA
AACCCGAGAGTGTGGCCATTGTGGCCCACAGTTATGGTGGCAGTCTTACT
CTTGATTTGGTGGAGCGGTTTCCGGATTTCTTTAAAGAATCCGTTTTTGC
CATTGCCTTCACTGATGCCGCCATGGGAAGTCCCCAAGCGAAGAACAAGG
AGTACCTGTGCGATGTGGCCTGCGATTGGGTTGCCAGCAACACACCCTTA
GACACACCCGTTTCACAGTCAAAGAGCAGCATCCGGAGGATTTCCGCTGG
CCACACTAAGCACGAATGGACCTCTTACTCG
BS03793.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-PA | 978 | CG10038-RA | 1..915 | 17..931 | 4575 | 100 | Plus |
CG10038-PB | 930 | CG10038-RB | 1..867 | 65..931 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-RA | 1212 | CG10038-RA | 142..1056 | 17..931 | 4575 | 100 | Plus |
CG10038-RB | 1134 | CG10038-RB | 102..978 | 55..931 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12349418..12349682 | 713..449 | 1325 | 100 | Minus |
3R | 32079331 | 3R | 12349143..12349375 | 931..699 | 1135 | 99.1 | Minus |
3R | 32079331 | 3R | 12349795..12349982 | 450..263 | 940 | 100 | Minus |
3R | 32079331 | 3R | 12350374..12350503 | 146..17 | 650 | 100 | Minus |
3R | 32079331 | 3R | 12350195..12350312 | 262..145 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:17:49 has no hits.
BS03793.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:58 Download gff for
BS03793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-PA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:44 Download gff for
BS03793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-PA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:21 Download gff for
BS03793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 104..1021 | 11..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:09 Download gff for
BS03793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 139..1056 | 11..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:09 Download gff for
BS03793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12349143..12349364 | 710..931 | 100 | <- | Minus |
3R | 12349422..12349680 | 451..709 | 100 | <- | Minus |
3R | 12349795..12349982 | 263..450 | 100 | <- | Minus |
3R | 12350195..12350310 | 147..262 | 100 | <- | Minus |
3R | 12350374..12350506 | 11..146 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:21 Download gff for
BS03793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8175917..8176032 | 147..262 | 100 | <- | Minus |
arm_3R | 8174865..8175086 | 710..931 | 100 | <- | Minus |
arm_3R | 8175144..8175402 | 451..709 | 100 | <- | Minus |
arm_3R | 8175517..8175704 | 263..450 | 100 | <- | Minus |
arm_3R | 8176096..8176228 | 11..146 | 97 | | Minus |
BS03793.complete Sequence
1010 bp (1010 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634768
> BS03793.complete
GAAGTTATCAGTCGACATGTGGTCTAGGCTTATTCAAATATTTCGACCCC
TCAGAAGTTTTCGAATGTCGCACTCACCGCCGCCGGCTAGCAATTGCGAG
GAGGCTCTCATCCAGCTGAAAAACTTTGGATATGCATTCGATGGAGAAGG
AGTGCTGCGCAAAGTCGATCCCGCCACTGGGGAGCCTGGCAAGGAACTCT
TTTCCTACAACGTCAGCGACGACGCCGCCGAAAACGAGAAGCACTACCAG
AAGCTAGCCAACCAAATCCCAGAAATTGTCTACGCTTTGCTGGAGAAAAA
CGGTCTTAGTCGCACCTACATCCCTTTTGACCAGCCTCCAGAGCGGTCTT
CGTTTGTATTCTCGCAACCGGCAAAGCTGTCGCAGTCCAAAAAGTTGCTA
GTCCTCATCCATGGCAGTGGATACGTTAAAGCCGGACAGTGGGCCAGAAG
TTTAATTATTAACAATTCCTTGGACCACGGTACCCAGCTGCCTTATGTGC
GACAGGCCCAAAAACTGGGATACGATCTCCTCATCACCAATGCCAACGAT
TGCACACGATTCTACAATGGTAAGGAGAATCCCATCAAGGGCGTCAATAC
GTCCGTAGAGCACGTTAAATATGTGTGGAAGAATATTGTATTGCCCGCGA
AACCCGAGAGTGTGGCCATTGTGGCCCACAGTTATGGTGGCAGTCTTACT
CTTGATTTGGTGGAGCGGTTTCCGGATTTCTTTAAAGAATCCGTTTTTGC
CATTGCCTTCACTGATGCCGCCATGGGAAGTCCCCAAGCGAAGAACAAGG
AGTACCTGTGCGATGTGGCCTGCGATTGGGTTGCCAGCAACACACCCTTA
GACACACCCGTTTCACAGTCAAAGAGCAGCATCCGGAGGATTTCCGCTGG
CCACACTAAGCACGAATGGACCTCTTACTCGGCCATCGATTCCGTGTTCA
AGTTCATTGAGGAAAAGTATGAACAGCGAGCGAATAAGAAGTGAAAGCTT
TCTAGACCAT
BS03793.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-RA | 978 | CG10038-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
CG10038-RB | 930 | CG10038-PB | 1..930 | 65..994 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-RA | 1212 | CG10038-RA | 142..1123 | 17..998 | 4895 | 99.9 | Plus |
CG10038-RB | 1134 | CG10038-RB | 102..1045 | 55..998 | 4705 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12349076..12349375 | 998..699 | 1455 | 99 | Minus |
3R | 32079331 | 3R | 12349418..12349682 | 713..449 | 1325 | 100 | Minus |
3R | 32079331 | 3R | 12349795..12349982 | 450..263 | 940 | 100 | Minus |
3R | 32079331 | 3R | 12350374..12350503 | 146..17 | 650 | 100 | Minus |
3R | 32079331 | 3R | 12350195..12350312 | 262..145 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:27:35 has no hits.
BS03793.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:05 Download gff for
BS03793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 1..978 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:57 Download gff for
BS03793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 104..1088 | 11..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:28 Download gff for
BS03793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 107..1083 | 17..993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:05 Download gff for
BS03793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 104..1088 | 11..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:14 Download gff for
BS03793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 142..1118 | 17..993 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:14 Download gff for
BS03793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12349081..12349364 | 710..993 | 100 | <- | Minus |
3R | 12349422..12349680 | 451..709 | 100 | <- | Minus |
3R | 12349795..12349982 | 263..450 | 100 | <- | Minus |
3R | 12350195..12350310 | 147..262 | 100 | <- | Minus |
3R | 12350374..12350503 | 17..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:28 Download gff for
BS03793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8174803..8175086 | 710..993 | 100 | <- | Minus |
arm_3R | 8175144..8175402 | 451..709 | 100 | <- | Minus |
arm_3R | 8175517..8175704 | 263..450 | 100 | <- | Minus |
arm_3R | 8175917..8176032 | 147..262 | 100 | <- | Minus |
arm_3R | 8176096..8176225 | 17..146 | 100 | | Minus |
BS03793.pep Sequence
Translation from 16 to 993
> BS03793.pep
MWSRLIQIFRPLRSFRMSHSPPPASNCEEALIQLKNFGYAFDGEGVLRKV
DPATGEPGKELFSYNVSDDAAENEKHYQKLANQIPEIVYALLEKNGLSRT
YIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQWARSLIINN
SLDHGTQLPYVRQAQKLGYDLLITNANDCTRFYNGKENPIKGVNTSVEHV
KYVWKNIVLPAKPESVAIVAHSYGGSLTLDLVERFPDFFKESVFAIAFTD
AAMGSPQAKNKEYLCDVACDWVASNTPLDTPVSQSKSSIRRISAGHTKHE
WTSYSAIDSVFKFIEEKYEQRANKK*
BS03793.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-PA | 325 | CG10038-PA | 1..325 | 1..325 | 1704 | 100 | Plus |
CG10038-PB | 309 | CG10038-PB | 1..309 | 17..325 | 1620 | 100 | Plus |