Clone BS03793 Report

Search the DGRC for BS03793

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:37
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG10038-RA
Protein status:BS03793.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03793.3prime Sequence

805 bp (804 high quality bases) assembled on 2005-12-01

> BS03793.3prime
ATGGTCTAGAAAGCTTTCACTTCTTATTCGCTCGCTGTTCATACTTTTCC
TCAATGAACTTGAACACGGAATCGATGGCCGAGTAAGAGGTCCATTCGTG
CTTAGTGTGGCCAGCGGAAATCCTCCGGATGCTGCTCTTTGACTGTGAAA
CGGGTGTGTCTAAGGGTGTGTTGCTGGCAACCCAATCGCAGGCCACATCG
CACAGGTACTCCTTGTTCTTCGCTTGGGGACTTCCCATGGCGGCATCAGT
GAAGGCAATGGCAAAAACGGATTCTTTAAAGAAATCCGGAAACCGCTCCA
CCAAATCAAGAGTAAGACTGCCACCATAACTGTGGGCCACAATGGCCACA
CTCTCGGGTTTCGCGGGCAATACAATATTCTTCCACACATATTTAACGTG
CTCTACGGACGTATTGACGCCCTTGATGGGATTCTCCTTACCATTGTAGA
ATCGTGTGCAATCGTTGGCATTGGTGATGAGGAGATCGTATCCCAGTTTT
TGGGCCTGTCGCACATAAGGCAGCTGGGTACCGTGGTCCAAGGAATTGTT
AATAATTAAACTTCTGGCCCACTGTCCGGCTTTAACGTATCCACTGCCAT
GGATGAGGACTAGCAACTTTTTGGACTGCGACAGCTTTGCCGGTTGCGAG
AATACAAACGAAGACCGCTCTGGAGGCTGGTCAAAAGGGATGTAGGTGCG
ACTAAGACCGTTTTTCTCCAGCAAAGCGTAGACAATTTCTGGGATTTGGT
TGGCTAGCTTCTGGTAGTGCTTCTCGTTTTCGGCGGCGTCGTCGCTGACG
TTGTA

BS03793.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-PA 978 CG10038-RA 190..978 805..17 3945 100 Minus
CG10038-PB 930 CG10038-RB 142..930 805..17 3945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-RB 1134 CG10038-RB 253..1045 805..13 3950 99.9 Minus
CG10038-RA 1212 CG10038-RA 331..1123 805..13 3950 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12349076..12349375 13..312 1455 99 Plus
3R 32079331 3R 12349418..12349682 298..562 1325 100 Plus
3R 32079331 3R 12349795..12349982 561..748 940 100 Plus
3R 32079331 3R 12350195..12350251 749..805 285 100 Plus
Blast to na_te.dros performed on 2015-02-01 09:31:44 has no hits.

BS03793.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:57 Download gff for BS03793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-PB 143..930 17..804 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:43 Download gff for BS03793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-PB 143..930 17..804 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:36:48 Download gff for BS03793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 297..1088 13..804 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:02:05 Download gff for BS03793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 332..1123 13..804 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:02:05 Download gff for BS03793.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12349076..12349364 13..301 99 <- Plus
3R 12349422..12349680 302..560 100 <- Plus
3R 12349795..12349982 561..748 100 <- Plus
3R 12350195..12350250 749..804 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:36:48 Download gff for BS03793.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8174798..8175086 13..301 99 <- Plus
arm_3R 8175144..8175402 302..560 100 <- Plus
arm_3R 8175517..8175704 561..748 100 <- Plus
arm_3R 8175917..8175972 749..804 100   Plus

BS03793.5prime Sequence

931 bp (789 high quality bases) assembled on 2005-11-29

> BS03793.5prime
GAAGTTATCAGTCGACATGTGGTCTAGGCTTATTCAAATATTTCGACCCC
TCAGAAGTTTTCGAATGTCGCACTCACCGCCGCCGGCTAGCAATTGCGAG
GAGGCTCTCATCCAGCTGAAAAACTTTGGATATGCATTCGATGGAGAAGG
AGTGCTGCGCAAAGTCGATCCCGCCACTGGGGAGCCTGGCAAGGAACTCT
TTTCCTACAACGTCAGCGACGACGCCGCCGAAAACGAGAAGCACTACCAG
AAGCTAGCCAACCAAATCCCAGAAATTGTCTACGCTTTGCTGGAGAAAAA
CGGTCTTAGTCGCACCTACATCCCTTTTGACCAGCCTCCAGAGCGGTCTT
CGTTTGTATTCTCGCAACCGGCAAAGCTGTCGCAGTCCAAAAAGTTGCTA
GTCCTCATCCATGGCAGTGGATACGTTAAAGCCGGACAGTGGGCCAGAAG
TTTAATTATTAACAATTCCTTGGACCACGGTACCCAGCTGCCTTATGTGC
GACAGGCCCAAAAACTGGGATACGATCTCCTCATCACCAATGCCAACGAT
TGCACACGATTCTACAATGGTAAGGAGAATCCCATCAAGGGCGTCAATAC
GTCCGTAGAGCACGTTAAATATGTGTGGAAGAATATTGTATTGCCCGCGA
AACCCGAGAGTGTGGCCATTGTGGCCCACAGTTATGGTGGCAGTCTTACT
CTTGATTTGGTGGAGCGGTTTCCGGATTTCTTTAAAGAATCCGTTTTTGC
CATTGCCTTCACTGATGCCGCCATGGGAAGTCCCCAAGCGAAGAACAAGG
AGTACCTGTGCGATGTGGCCTGCGATTGGGTTGCCAGCAACACACCCTTA
GACACACCCGTTTCACAGTCAAAGAGCAGCATCCGGAGGATTTCCGCTGG
CCACACTAAGCACGAATGGACCTCTTACTCG

BS03793.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-PA 978 CG10038-RA 1..915 17..931 4575 100 Plus
CG10038-PB 930 CG10038-RB 1..867 65..931 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-RA 1212 CG10038-RA 142..1056 17..931 4575 100 Plus
CG10038-RB 1134 CG10038-RB 102..978 55..931 4385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12349418..12349682 713..449 1325 100 Minus
3R 32079331 3R 12349143..12349375 931..699 1135 99.1 Minus
3R 32079331 3R 12349795..12349982 450..263 940 100 Minus
3R 32079331 3R 12350374..12350503 146..17 650 100 Minus
3R 32079331 3R 12350195..12350312 262..145 590 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:17:49 has no hits.

BS03793.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:32:58 Download gff for BS03793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-PA 1..915 17..931 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:44 Download gff for BS03793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-PA 1..915 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:21 Download gff for BS03793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 104..1021 11..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:09 Download gff for BS03793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 139..1056 11..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:09 Download gff for BS03793.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12349143..12349364 710..931 100 <- Minus
3R 12349422..12349680 451..709 100 <- Minus
3R 12349795..12349982 263..450 100 <- Minus
3R 12350195..12350310 147..262 100 <- Minus
3R 12350374..12350506 11..146 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:21 Download gff for BS03793.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8175917..8176032 147..262 100 <- Minus
arm_3R 8174865..8175086 710..931 100 <- Minus
arm_3R 8175144..8175402 451..709 100 <- Minus
arm_3R 8175517..8175704 263..450 100 <- Minus
arm_3R 8176096..8176228 11..146 97   Minus

BS03793.complete Sequence

1010 bp (1010 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634768

> BS03793.complete
GAAGTTATCAGTCGACATGTGGTCTAGGCTTATTCAAATATTTCGACCCC
TCAGAAGTTTTCGAATGTCGCACTCACCGCCGCCGGCTAGCAATTGCGAG
GAGGCTCTCATCCAGCTGAAAAACTTTGGATATGCATTCGATGGAGAAGG
AGTGCTGCGCAAAGTCGATCCCGCCACTGGGGAGCCTGGCAAGGAACTCT
TTTCCTACAACGTCAGCGACGACGCCGCCGAAAACGAGAAGCACTACCAG
AAGCTAGCCAACCAAATCCCAGAAATTGTCTACGCTTTGCTGGAGAAAAA
CGGTCTTAGTCGCACCTACATCCCTTTTGACCAGCCTCCAGAGCGGTCTT
CGTTTGTATTCTCGCAACCGGCAAAGCTGTCGCAGTCCAAAAAGTTGCTA
GTCCTCATCCATGGCAGTGGATACGTTAAAGCCGGACAGTGGGCCAGAAG
TTTAATTATTAACAATTCCTTGGACCACGGTACCCAGCTGCCTTATGTGC
GACAGGCCCAAAAACTGGGATACGATCTCCTCATCACCAATGCCAACGAT
TGCACACGATTCTACAATGGTAAGGAGAATCCCATCAAGGGCGTCAATAC
GTCCGTAGAGCACGTTAAATATGTGTGGAAGAATATTGTATTGCCCGCGA
AACCCGAGAGTGTGGCCATTGTGGCCCACAGTTATGGTGGCAGTCTTACT
CTTGATTTGGTGGAGCGGTTTCCGGATTTCTTTAAAGAATCCGTTTTTGC
CATTGCCTTCACTGATGCCGCCATGGGAAGTCCCCAAGCGAAGAACAAGG
AGTACCTGTGCGATGTGGCCTGCGATTGGGTTGCCAGCAACACACCCTTA
GACACACCCGTTTCACAGTCAAAGAGCAGCATCCGGAGGATTTCCGCTGG
CCACACTAAGCACGAATGGACCTCTTACTCGGCCATCGATTCCGTGTTCA
AGTTCATTGAGGAAAAGTATGAACAGCGAGCGAATAAGAAGTGAAAGCTT
TCTAGACCAT

BS03793.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-RA 978 CG10038-PA 1..978 17..994 4890 100 Plus
CG10038-RB 930 CG10038-PB 1..930 65..994 4650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-RA 1212 CG10038-RA 142..1123 17..998 4895 99.9 Plus
CG10038-RB 1134 CG10038-RB 102..1045 55..998 4705 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12349076..12349375 998..699 1455 99 Minus
3R 32079331 3R 12349418..12349682 713..449 1325 100 Minus
3R 32079331 3R 12349795..12349982 450..263 940 100 Minus
3R 32079331 3R 12350374..12350503 146..17 650 100 Minus
3R 32079331 3R 12350195..12350312 262..145 590 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:27:35 has no hits.

BS03793.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:05 Download gff for BS03793.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 1..978 17..994 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:57 Download gff for BS03793.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 104..1088 11..998 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:28 Download gff for BS03793.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 107..1083 17..993 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:05 Download gff for BS03793.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 104..1088 11..998 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:14 Download gff for BS03793.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 142..1118 17..993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:14 Download gff for BS03793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12349081..12349364 710..993 100 <- Minus
3R 12349422..12349680 451..709 100 <- Minus
3R 12349795..12349982 263..450 100 <- Minus
3R 12350195..12350310 147..262 100 <- Minus
3R 12350374..12350503 17..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:28 Download gff for BS03793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8174803..8175086 710..993 100 <- Minus
arm_3R 8175144..8175402 451..709 100 <- Minus
arm_3R 8175517..8175704 263..450 100 <- Minus
arm_3R 8175917..8176032 147..262 100 <- Minus
arm_3R 8176096..8176225 17..146 100   Minus

BS03793.pep Sequence

Translation from 16 to 993

> BS03793.pep
MWSRLIQIFRPLRSFRMSHSPPPASNCEEALIQLKNFGYAFDGEGVLRKV
DPATGEPGKELFSYNVSDDAAENEKHYQKLANQIPEIVYALLEKNGLSRT
YIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQWARSLIINN
SLDHGTQLPYVRQAQKLGYDLLITNANDCTRFYNGKENPIKGVNTSVEHV
KYVWKNIVLPAKPESVAIVAHSYGGSLTLDLVERFPDFFKESVFAIAFTD
AAMGSPQAKNKEYLCDVACDWVASNTPLDTPVSQSKSSIRRISAGHTKHE
WTSYSAIDSVFKFIEEKYEQRANKK*

BS03793.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-PA 325 CG10038-PA 1..325 1..325 1704 100 Plus
CG10038-PB 309 CG10038-PB 1..309 17..325 1620 100 Plus