Clone BS03803 Report

Search the DGRC for BS03803

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptHsp26-RA
Protein status:BS03803.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03803.3prime Sequence

657 bp (656 high quality bases) assembled on 2005-12-01

> BS03803.3prime
ATGGTCTAGAAAGCTTTTACTTGTCCTTGCCGTTGGGTGCTCCGTTCTCC
TTGCCCTTCACCTCGCTTTCATTTGCCTTAACGTTGAGGTGAGCGGGTCC
CACTTGCTGAATTTGAATGATGCGCTCCTTGGACTTGTCCTCGACGGCCT
GCGGCTTGGGAATACTGACGGTGAGCACGCCATCCGACGACAGCTGCGAG
ACCACTTGCTCCGCCTTGTAGCCATCGGGAACCTTGTAGCGGCGCACAAA
GTGGCGCATGATGTGACCATGGTCGTCCTGGCGTTCCTCATGCTTGCCCT
CGACCAAGATGGAGTCGTCCACCACCTTCACGTTGAGCTCACTGGGCTTG
AACTGGGCGACGTCCATGCACACCTGGAATCCATCCTTGCCCACATGGGC
GGTTGCCGGCCAGTGAATGTCGTTGCGGTTGGCCATCTCGCGCCGCAAAG
CCAAAACCTGGCCGGCGGGCGACGATGGGCATATCGGCGATGCGCAAGGG
CATCCGTTGATGGAACGGCGCTGCTGAGTGCCAAGGGGCAGCACGTAGCG
GGAATGCGGATGCAATCCCAGTCCAAGCTCGTAGATGGGGCTGCGGGGCT
CCTGGAGTTCATCCACAAGCGAAAGCAGAGTAGATAGCGACATGTCGACT
GATAACT

BS03803.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4183-PA 627 Hsp26-RA 1..627 643..17 3135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp26-RB 1010 CG4183-RB 240..867 643..16 3140 100 Minus
Hsp26-RA 958 CG4183-RA 188..815 643..16 3140 100 Minus
Hsp23-RB 884 CG4463-RB 318..630 388..76 350 74.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9376561..9377188 16..643 3140 100 Plus
3L 28110227 3L 9382199..9382511 388..76 335 73.8 Minus
3L 28110227 3L 9384438..9384590 394..242 330 81 Minus
Blast to na_te.dros performed on 2015-02-10 22:42:08 has no hits.

BS03803.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:06 Download gff for BS03803.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-PA 1..627 17..643 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:54 Download gff for BS03803.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4183-PA 1..627 17..643 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:32:56 Download gff for BS03803.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 182..824 9..649 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:22 Download gff for BS03803.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 182..824 9..649 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:22 Download gff for BS03803.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9376552..9377194 9..649 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:32:56 Download gff for BS03803.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9369652..9370294 9..649 98   Plus

BS03803.5prime Sequence

657 bp (656 high quality bases) assembled on 2005-11-29

> BS03803.5prime
GAAGTTATCAGTCGACATGTCGCTATCTACTCTGCTTTCGCTTGTGGATG
AACTCCAGGAGCCCCGCAGCCCCATCTACGAGCTTGGACTGGGATTGCAT
CCGCATTCCCGCTACGTGCTGCCCCTTGGCACTCAGCAGCGCCGTTCCAT
CAACGGATGCCCTTGCGCATCGCCGATATGCCCATCGTCGCCCGCCGGCC
AGGTTTTGGCTTTGCGGCGCGAGATGGCCAACCGCAACGACATTCACTGG
CCGGCAACCGCCCATGTGGGCAAGGATGGATTCCAGGTGTGCATGGACGT
CGCCCAGTTCAAGCCCAGTGAGCTCAACGTGAAGGTGGTGGACGACTCCA
TCTTGGTCGAGGGCAAGCATGAGGAACGCCAGGACGACCATGGTCACATC
ATGCGCCACTTTGTGCGCCGCTACAAGGTTCCCGATGGCTACAAGGCGGA
GCAAGTGGTCTCGCAGCTGTCGTCGGATGGCGTGCTCACCGTCAGTATTC
CCAAGCCGCAGGCCGTCGAGGACAAGTCCAAGGAGCGCATCATTCAAATT
CAGCAAGTGGGACCCGCTCACCTCAACGTTAAGGCAAATGAAAGCGAGGT
GAAGGGCAAGGAGAACGGAGCACCCAACGGCAAGGACAAGTAAAAGCTTT
CTAGACC

BS03803.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4183-PA 627 Hsp26-RA 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp26-RB 1010 CG4183-RB 240..867 17..644 3140 100 Plus
Hsp26-RA 958 CG4183-RA 188..815 17..644 3140 100 Plus
Hsp23-RB 884 CG4463-RB 318..630 272..584 350 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9376561..9377188 644..17 3140 100 Minus
3L 28110227 3L 9382199..9382511 272..584 335 73.8 Plus
3L 28110227 3L 9384438..9384590 266..418 330 81 Plus
Blast to na_te.dros performed on 2015-02-02 12:09:47 has no hits.

BS03803.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:07 Download gff for BS03803.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-PA 1..627 17..643 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:55 Download gff for BS03803.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4183-PA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:50 Download gff for BS03803.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 182..824 11..651 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:32 Download gff for BS03803.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 182..824 11..651 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:32 Download gff for BS03803.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9376552..9377194 11..651 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:50 Download gff for BS03803.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9369652..9370294 11..651 98   Minus

BS03803.complete Sequence

659 bp (659 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634770

> BS03803.complete
GAAGTTATCAGTCGACATGTCGCTATCTACTCTGCTTTCGCTTGTGGATG
AACTCCAGGAGCCCCGCAGCCCCATCTACGAGCTTGGACTGGGATTGCAT
CCGCATTCCCGCTACGTGCTGCCCCTTGGCACTCAGCAGCGCCGTTCCAT
CAACGGATGCCCTTGCGCATCGCCGATATGCCCATCGTCGCCCGCCGGCC
AGGTTTTGGCTTTGCGGCGCGAGATGGCCAACCGCAACGACATTCACTGG
CCGGCAACCGCCCATGTGGGCAAGGATGGATTCCAGGTGTGCATGGACGT
CGCCCAGTTCAAGCCCAGTGAGCTCAACGTGAAGGTGGTGGACGACTCCA
TCTTGGTCGAGGGCAAGCATGAGGAACGCCAGGACGACCATGGTCACATC
ATGCGCCACTTTGTGCGCCGCTACAAGGTTCCCGATGGCTACAAGGCGGA
GCAAGTGGTCTCGCAGCTGTCGTCGGATGGCGTGCTCACCGTCAGTATTC
CCAAGCCGCAGGCCGTCGAGGACAAGTCCAAGGAGCGCATCATTCAAATT
CAGCAAGTGGGACCCGCTCACCTCAACGTTAAGGCAAATGAAAGCGAGGT
GAAGGGCAAGGAGAACGGAGCACCCAACGGCAAGGACAAGTAAAAGCTTT
CTAGACCAT

BS03803.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp26-RB 627 CG4183-PB 1..627 17..643 3135 100 Plus
Hsp26-RA 627 CG4183-PA 1..627 17..643 3135 100 Plus
Hsp23-RB 561 CG4463-PB 202..514 272..584 335 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp26-RB 1010 CG4183-RB 240..867 17..644 3140 100 Plus
Hsp26-RA 958 CG4183-RA 188..815 17..644 3140 100 Plus
Hsp23-RB 884 CG4463-RB 318..630 272..584 335 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9376561..9377188 644..17 3140 100 Minus
3L 28110227 3L 9382199..9382511 272..584 335 73.8 Plus
3L 28110227 3L 9384438..9384590 266..418 330 81 Plus
Blast to na_te.dros performed on 2014-11-27 16:42:27 has no hits.

BS03803.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:46 Download gff for BS03803.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:30 Download gff for BS03803.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 234..876 11..651 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:07 Download gff for BS03803.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 188..812 17..641 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:46 Download gff for BS03803.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 234..876 11..651 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:54 Download gff for BS03803.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 188..812 17..641 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:54 Download gff for BS03803.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9376564..9377188 17..641 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:07 Download gff for BS03803.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9369664..9370288 17..641 100   Minus

BS03803.pep Sequence

Translation from 16 to 642

> BS03803.pep
MSLSTLLSLVDELQEPRSPIYELGLGLHPHSRYVLPLGTQQRRSINGCPC
ASPICPSSPAGQVLALRREMANRNDIHWPATAHVGKDGFQVCMDVAQFKP
SELNVKVVDDSILVEGKHEERQDDHGHIMRHFVRRYKVPDGYKAEQVVSQ
LSSDGVLTVSIPKPQAVEDKSKERIIQIQQVGPAHLNVKANESEVKGKEN
GAPNGKDK*

BS03803.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp26-PB 208 CG4183-PB 1..208 1..208 1089 100 Plus
Hsp26-PA 208 CG4183-PA 1..208 1..208 1089 100 Plus
Hsp23-PB 186 CG4463-PB 62..183 80..201 457 68.9 Plus
Hsp23-PA 186 CG4463-PA 62..183 80..201 457 68.9 Plus
Hsp27-PB 213 CG4466-PB 1..205 1..202 396 47 Plus