Clone Sequence Records
BS03805.3prime Sequence
747 bp (746 high quality bases) assembled on 2005-12-01
> BS03805.3prime
ATGGTCTAGAAAGCTTTTACTGGCATGTTATGAATTTTCTGAAACTGCGA
GATGTTCCTCCAGCCACCCGGAAGGCCAGGACTCCCGTAAGTATGGTGAC
CAAGTAGTTTATCAGCAGAGTGGTCGTGTAAAGCTCATTGGCATTGAGCA
GAGTTATCAGGGAGACGAACAGGTGGCTGAAAACCACATAGCCTATGTGG
ATATAGTTGTTTGTGTCGAATGCGTTGAAGAAAATAACGCTCCAGAAGGT
GTGCAGCAGGATAATCGACAACGCCTGGGCAGCCGAGGTGACGAAGAATA
GCTCAGTTCCGCCCTTCAAGCCCATGGTGCCGGGACCACTCATATCAGCC
AGCACATTGACCAGTGCAAACATCCCGGATATAATGCCGAATCCCAAGCC
GGAGACATAGGCCAGGATGTGCTTGTTGTCCGTCACTCGCGTGTCCTCCG
CCACGGCGTGCAATCCCTGCTCCGTGCTGCGCAGTATCCGGTAGATGATG
TACCGGAAGGCTTCCTGGAAGCACACCGAGAAGACCACGCCAAATGCCAG
GAACTCCTTCAGCGGAATCAGGGCATACCACAGGGAAGAGATCAGCAGGG
AAAGCAGCCAGAAGAATGCCGCCGCAATCAGAATGATGATCCGCACTGGA
TCATTGGCGATGGTGAAGACGAACAAGGCGAAGGGCGGTCCGAAGGCGAT
GAAGGTGCAGCCAAAGAACTCGGGCAACGTCATGTCGACTGATAACT
BS03805.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2855-PA | 717 | aph-1-RA | 1..717 | 733..17 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aph-1-RB | 990 | CG2855-RB | 83..800 | 733..16 | 3590 | 100 | Minus |
aph-1-RA | 863 | CG2855-RA | 83..800 | 733..16 | 3590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2766315..2766707 | 733..341 | 1965 | 100 | Minus |
2L | 23513712 | 2L | 2766766..2767091 | 341..16 | 1630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:34:20 has no hits.
BS03805.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:11 Download gff for
BS03805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aph-1-PA | 1..717 | 17..733 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:59 Download gff for
BS03805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2855-PA | 1..717 | 17..733 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:13 Download gff for
BS03805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aph-1-RA | 76..806 | 8..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:46:36 Download gff for
BS03805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aph-1-RA | 76..806 | 8..740 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:36 Download gff for
BS03805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2766308..2766707 | 341..740 | 99 | -> | Minus |
2L | 2766767..2767097 | 8..340 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:13 Download gff for
BS03805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2766308..2766707 | 341..740 | 99 | -> | Minus |
arm_2L | 2766767..2767097 | 8..340 | 98 | | Minus |
BS03805.5prime Sequence
747 bp (746 high quality bases) assembled on 2005-11-29
> BS03805.5prime
GAAGTTATCAGTCGACATGACGTTGCCCGAGTTCTTTGGCTGCACCTTCA
TCGCCTTCGGACCGCCCTTCGCCTTGTTCGTCTTCACCATCGCCAATGAT
CCAGTGCGGATCATCATTCTGATTGCGGCGGCATTCTTCTGGCTGCTTTC
CCTGCTGATCTCTTCCCTGTGGTATGCCCTGATTCCGCTGAAGGAGTTCC
TGGCATTTGGCGTGGTCTTCTCGGTGTGCTTCCAGGAAGCCTTCCGGTAC
ATCATCTACCGGATACTGCGCAGCACGGAGCAGGGATTGCACGCCGTGGC
GGAGGACACGCGAGTGACGGACAACAAGCACATCCTGGCCTATGTCTCCG
GCTTGGGATTCGGCATTATATCCGGGATGTTTGCACTGGTCAATGTGCTG
GCTGATATGAGTGGTCCCGGCACCATGGGCTTGAAGGGCGGAACTGAGCT
ATTCTTCGTCACCTCGGCTGCCCAGGCGTTGTCGATTATCCTGCTGCACA
CCTTCTGGAGCGTTATTTTCTTCAACGCATTCGACACAAACAACTATATC
CACATAGGCTATGTGGTTTTCAGCCACCTGTTCGTCTCCCTGATAACTCT
GCTCAATGCCAATGAGCTTTACACGACCACTCTGCTGATAAACTACTTGG
TCACCATACTTACGGGAGTCCTGGCCTTCCGGGTGGCTGGAGGAACATCT
CGCAGTTTCAGAAAATTCATAACATGCCAGTAAAAGCTTTCTAGACC
BS03805.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2855-PA | 717 | aph-1-RA | 1..717 | 17..733 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aph-1-RB | 990 | CG2855-RB | 83..800 | 17..734 | 3590 | 100 | Plus |
aph-1-RA | 863 | CG2855-RA | 83..800 | 17..734 | 3590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2766315..2766707 | 17..409 | 1965 | 100 | Plus |
2L | 23513712 | 2L | 2766766..2767091 | 409..734 | 1630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:26:34 has no hits.
BS03805.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:12 Download gff for
BS03805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aph-1-PA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:00 Download gff for
BS03805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2855-PA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:39 Download gff for
BS03805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aph-1-RA | 76..806 | 10..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:10 Download gff for
BS03805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aph-1-RA | 76..806 | 10..742 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:10 Download gff for
BS03805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2766308..2766707 | 10..409 | 99 | -> | Plus |
2L | 2766767..2767097 | 410..742 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:39 Download gff for
BS03805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2766308..2766707 | 10..409 | 99 | -> | Plus |
arm_2L | 2766767..2767097 | 410..742 | 98 | | Plus |
BS03805.complete Sequence
749 bp (749 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634771
> BS03805.complete
GAAGTTATCAGTCGACATGACGTTGCCCGAGTTCTTTGGCTGCACCTTCA
TCGCCTTCGGACCGCCCTTCGCCTTGTTCGTCTTCACCATCGCCAATGAT
CCAGTGCGGATCATCATTCTGATTGCGGCGGCATTCTTCTGGCTGCTTTC
CCTGCTGATCTCTTCCCTGTGGTATGCCCTGATTCCGCTGAAGGAGTTCC
TGGCATTTGGCGTGGTCTTCTCGGTGTGCTTCCAGGAAGCCTTCCGGTAC
ATCATCTACCGGATACTGCGCAGCACGGAGCAGGGATTGCACGCCGTGGC
GGAGGACACGCGAGTGACGGACAACAAGCACATCCTGGCCTATGTCTCCG
GCTTGGGATTCGGCATTATATCCGGGATGTTTGCACTGGTCAATGTGCTG
GCTGATATGAGTGGTCCCGGCACCATGGGCTTGAAGGGCGGAACTGAGCT
ATTCTTCGTCACCTCGGCTGCCCAGGCGTTGTCGATTATCCTGCTGCACA
CCTTCTGGAGCGTTATTTTCTTCAACGCATTCGACACAAACAACTATATC
CACATAGGCTATGTGGTTTTCAGCCACCTGTTCGTCTCCCTGATAACTCT
GCTCAATGCCAATGAGCTTTACACGACCACTCTGCTGATAAACTACTTGG
TCACCATACTTACGGGAGTCCTGGCCTTCCGGGTGGCTGGAGGAACATCT
CGCAGTTTCAGAAAATTCATAACATGCCAGTAAAAGCTTTCTAGACCAT
BS03805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aph-1-RB | 717 | CG2855-PB | 1..717 | 17..733 | 3585 | 100 | Plus |
aph-1-RA | 717 | CG2855-PA | 1..717 | 17..733 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aph-1-RB | 990 | CG2855-RB | 83..800 | 17..734 | 3590 | 100 | Plus |
aph-1-RA | 863 | CG2855-RA | 83..800 | 17..734 | 3590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2766315..2766707 | 17..409 | 1965 | 100 | Plus |
2L | 23513712 | 2L | 2766766..2767091 | 409..734 | 1630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:02:13 has no hits.
BS03805.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:52 Download gff for
BS03805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aph-1-RA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:38 Download gff for
BS03805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aph-1-RA | 74..804 | 10..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:33 Download gff for
BS03805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aph-1-RA | 83..797 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:53 Download gff for
BS03805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aph-1-RA | 74..804 | 10..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:19 Download gff for
BS03805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aph-1-RA | 83..797 | 17..731 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:19 Download gff for
BS03805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2766315..2766707 | 17..409 | 100 | -> | Plus |
2L | 2766767..2767088 | 410..731 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:33 Download gff for
BS03805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2766767..2767088 | 410..731 | 100 | | Plus |
arm_2L | 2766315..2766707 | 17..409 | 100 | -> | Plus |
BS03805.pep Sequence
Translation from 16 to 732
> BS03805.pep
MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISS
LWYALIPLKEFLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRV
TDNKHILAYVSGLGFGIISGMFALVNVLADMSGPGTMGLKGGTELFFVTS
AAQALSIILLHTFWSVIFFNAFDTNNYIHIGYVVFSHLFVSLITLLNANE
LYTTTLLINYLVTILTGVLAFRVAGGTSRSFRKFITCQ*
BS03805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aph-1-PB | 238 | CG2855-PB | 1..238 | 1..238 | 1212 | 100 | Plus |
aph-1-PA | 238 | CG2855-PA | 1..238 | 1..238 | 1212 | 100 | Plus |