Clone BS03805 Report

Search the DGRC for BS03805

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:5
Vector:pDNR-Dual
Associated Gene/Transcriptaph-1-RA
Protein status:BS03805.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03805.3prime Sequence

747 bp (746 high quality bases) assembled on 2005-12-01

> BS03805.3prime
ATGGTCTAGAAAGCTTTTACTGGCATGTTATGAATTTTCTGAAACTGCGA
GATGTTCCTCCAGCCACCCGGAAGGCCAGGACTCCCGTAAGTATGGTGAC
CAAGTAGTTTATCAGCAGAGTGGTCGTGTAAAGCTCATTGGCATTGAGCA
GAGTTATCAGGGAGACGAACAGGTGGCTGAAAACCACATAGCCTATGTGG
ATATAGTTGTTTGTGTCGAATGCGTTGAAGAAAATAACGCTCCAGAAGGT
GTGCAGCAGGATAATCGACAACGCCTGGGCAGCCGAGGTGACGAAGAATA
GCTCAGTTCCGCCCTTCAAGCCCATGGTGCCGGGACCACTCATATCAGCC
AGCACATTGACCAGTGCAAACATCCCGGATATAATGCCGAATCCCAAGCC
GGAGACATAGGCCAGGATGTGCTTGTTGTCCGTCACTCGCGTGTCCTCCG
CCACGGCGTGCAATCCCTGCTCCGTGCTGCGCAGTATCCGGTAGATGATG
TACCGGAAGGCTTCCTGGAAGCACACCGAGAAGACCACGCCAAATGCCAG
GAACTCCTTCAGCGGAATCAGGGCATACCACAGGGAAGAGATCAGCAGGG
AAAGCAGCCAGAAGAATGCCGCCGCAATCAGAATGATGATCCGCACTGGA
TCATTGGCGATGGTGAAGACGAACAAGGCGAAGGGCGGTCCGAAGGCGAT
GAAGGTGCAGCCAAAGAACTCGGGCAACGTCATGTCGACTGATAACT

BS03805.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2855-PA 717 aph-1-RA 1..717 733..17 3585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
aph-1-RB 990 CG2855-RB 83..800 733..16 3590 100 Minus
aph-1-RA 863 CG2855-RA 83..800 733..16 3590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2766315..2766707 733..341 1965 100 Minus
2L 23513712 2L 2766766..2767091 341..16 1630 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:34:20 has no hits.

BS03805.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:11 Download gff for BS03805.3prime
Subject Subject Range Query Range Percent Splice Strand
aph-1-PA 1..717 17..733 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:49:59 Download gff for BS03805.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2855-PA 1..717 17..733 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:13 Download gff for BS03805.3prime
Subject Subject Range Query Range Percent Splice Strand
aph-1-RA 76..806 8..740 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:46:36 Download gff for BS03805.3prime
Subject Subject Range Query Range Percent Splice Strand
aph-1-RA 76..806 8..740 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:36 Download gff for BS03805.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2766308..2766707 341..740 99 -> Minus
2L 2766767..2767097 8..340 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:13 Download gff for BS03805.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2766308..2766707 341..740 99 -> Minus
arm_2L 2766767..2767097 8..340 98   Minus

BS03805.5prime Sequence

747 bp (746 high quality bases) assembled on 2005-11-29

> BS03805.5prime
GAAGTTATCAGTCGACATGACGTTGCCCGAGTTCTTTGGCTGCACCTTCA
TCGCCTTCGGACCGCCCTTCGCCTTGTTCGTCTTCACCATCGCCAATGAT
CCAGTGCGGATCATCATTCTGATTGCGGCGGCATTCTTCTGGCTGCTTTC
CCTGCTGATCTCTTCCCTGTGGTATGCCCTGATTCCGCTGAAGGAGTTCC
TGGCATTTGGCGTGGTCTTCTCGGTGTGCTTCCAGGAAGCCTTCCGGTAC
ATCATCTACCGGATACTGCGCAGCACGGAGCAGGGATTGCACGCCGTGGC
GGAGGACACGCGAGTGACGGACAACAAGCACATCCTGGCCTATGTCTCCG
GCTTGGGATTCGGCATTATATCCGGGATGTTTGCACTGGTCAATGTGCTG
GCTGATATGAGTGGTCCCGGCACCATGGGCTTGAAGGGCGGAACTGAGCT
ATTCTTCGTCACCTCGGCTGCCCAGGCGTTGTCGATTATCCTGCTGCACA
CCTTCTGGAGCGTTATTTTCTTCAACGCATTCGACACAAACAACTATATC
CACATAGGCTATGTGGTTTTCAGCCACCTGTTCGTCTCCCTGATAACTCT
GCTCAATGCCAATGAGCTTTACACGACCACTCTGCTGATAAACTACTTGG
TCACCATACTTACGGGAGTCCTGGCCTTCCGGGTGGCTGGAGGAACATCT
CGCAGTTTCAGAAAATTCATAACATGCCAGTAAAAGCTTTCTAGACC

BS03805.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2855-PA 717 aph-1-RA 1..717 17..733 3585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
aph-1-RB 990 CG2855-RB 83..800 17..734 3590 100 Plus
aph-1-RA 863 CG2855-RA 83..800 17..734 3590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2766315..2766707 17..409 1965 100 Plus
2L 23513712 2L 2766766..2767091 409..734 1630 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:26:34 has no hits.

BS03805.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:12 Download gff for BS03805.5prime
Subject Subject Range Query Range Percent Splice Strand
aph-1-PA 1..717 17..733 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:00 Download gff for BS03805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2855-PA 1..717 17..733 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:39 Download gff for BS03805.5prime
Subject Subject Range Query Range Percent Splice Strand
aph-1-RA 76..806 10..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:10 Download gff for BS03805.5prime
Subject Subject Range Query Range Percent Splice Strand
aph-1-RA 76..806 10..742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:10 Download gff for BS03805.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2766308..2766707 10..409 99 -> Plus
2L 2766767..2767097 410..742 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:39 Download gff for BS03805.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2766308..2766707 10..409 99 -> Plus
arm_2L 2766767..2767097 410..742 98   Plus

BS03805.complete Sequence

749 bp (749 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634771

> BS03805.complete
GAAGTTATCAGTCGACATGACGTTGCCCGAGTTCTTTGGCTGCACCTTCA
TCGCCTTCGGACCGCCCTTCGCCTTGTTCGTCTTCACCATCGCCAATGAT
CCAGTGCGGATCATCATTCTGATTGCGGCGGCATTCTTCTGGCTGCTTTC
CCTGCTGATCTCTTCCCTGTGGTATGCCCTGATTCCGCTGAAGGAGTTCC
TGGCATTTGGCGTGGTCTTCTCGGTGTGCTTCCAGGAAGCCTTCCGGTAC
ATCATCTACCGGATACTGCGCAGCACGGAGCAGGGATTGCACGCCGTGGC
GGAGGACACGCGAGTGACGGACAACAAGCACATCCTGGCCTATGTCTCCG
GCTTGGGATTCGGCATTATATCCGGGATGTTTGCACTGGTCAATGTGCTG
GCTGATATGAGTGGTCCCGGCACCATGGGCTTGAAGGGCGGAACTGAGCT
ATTCTTCGTCACCTCGGCTGCCCAGGCGTTGTCGATTATCCTGCTGCACA
CCTTCTGGAGCGTTATTTTCTTCAACGCATTCGACACAAACAACTATATC
CACATAGGCTATGTGGTTTTCAGCCACCTGTTCGTCTCCCTGATAACTCT
GCTCAATGCCAATGAGCTTTACACGACCACTCTGCTGATAAACTACTTGG
TCACCATACTTACGGGAGTCCTGGCCTTCCGGGTGGCTGGAGGAACATCT
CGCAGTTTCAGAAAATTCATAACATGCCAGTAAAAGCTTTCTAGACCAT

BS03805.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
aph-1-RB 717 CG2855-PB 1..717 17..733 3585 100 Plus
aph-1-RA 717 CG2855-PA 1..717 17..733 3585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
aph-1-RB 990 CG2855-RB 83..800 17..734 3590 100 Plus
aph-1-RA 863 CG2855-RA 83..800 17..734 3590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2766315..2766707 17..409 1965 100 Plus
2L 23513712 2L 2766766..2767091 409..734 1630 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:02:13 has no hits.

BS03805.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:52 Download gff for BS03805.complete
Subject Subject Range Query Range Percent Splice Strand
aph-1-RA 1..717 17..733 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:38 Download gff for BS03805.complete
Subject Subject Range Query Range Percent Splice Strand
aph-1-RA 74..804 10..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:33 Download gff for BS03805.complete
Subject Subject Range Query Range Percent Splice Strand
aph-1-RA 83..797 17..731 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:53 Download gff for BS03805.complete
Subject Subject Range Query Range Percent Splice Strand
aph-1-RA 74..804 10..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:19 Download gff for BS03805.complete
Subject Subject Range Query Range Percent Splice Strand
aph-1-RA 83..797 17..731 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:19 Download gff for BS03805.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2766315..2766707 17..409 100 -> Plus
2L 2766767..2767088 410..731 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:33 Download gff for BS03805.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2766767..2767088 410..731 100   Plus
arm_2L 2766315..2766707 17..409 100 -> Plus

BS03805.pep Sequence

Translation from 16 to 732

> BS03805.pep
MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISS
LWYALIPLKEFLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRV
TDNKHILAYVSGLGFGIISGMFALVNVLADMSGPGTMGLKGGTELFFVTS
AAQALSIILLHTFWSVIFFNAFDTNNYIHIGYVVFSHLFVSLITLLNANE
LYTTTLLINYLVTILTGVLAFRVAGGTSRSFRKFITCQ*

BS03805.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
aph-1-PB 238 CG2855-PB 1..238 1..238 1212 100 Plus
aph-1-PA 238 CG2855-PA 1..238 1..238 1212 100 Plus