Clone Sequence Records
BS03808.3prime Sequence
411 bp (410 high quality bases) assembled on 2005-12-01
> BS03808.3prime
ATGGTCTAGAAAGCTTTTAATCCTCATCCTCGAACATCATCTCGACGAGA
TCCTGATTGGAGCAGCGCTCGCCATCCAGACGCTGTGGCCGCTTCCAGCG
CAACAGAGTGGGCAAGAAGATCAGATGCGTGTTGGGATCCTTGCGGAAGG
GGCAGTTCAAATCCTTCCAGTATGCCCGCTCGCCCACATCCACATGCACG
AAGTGCGAGTTGCCCGGGGCCTTCTTCAGCGCATCGTGTATCACCGGCTC
CGCCTTGACGCAGTAGGGGCACCAGCTCTCTCCTTTCTCGTCCTTGCCGC
CACTGAAGAGGACGTGGACCGGCTCGTCGCCGTTCTCCAGTTCCTCCATC
TTTTTGGTGAACTCATCGTATCCCTTGACGTTGTGTGTGACCACCATGTC
GACTGATAACT
BS03808.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11024-PA | 381 | cl-RA | 1..381 | 397..17 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-RC | 674 | CG11024-RC | 200..581 | 398..17 | 1910 | 100 | Minus |
cl-RB | 689 | CG11024-RB | 215..596 | 398..17 | 1910 | 100 | Minus |
cl-RA | 615 | CG11024-RA | 141..522 | 398..17 | 1910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5521136..5521289 | 170..17 | 770 | 100 | Minus |
2L | 23513712 | 2L | 5520400..5520545 | 398..253 | 730 | 100 | Minus |
2L | 23513712 | 2L | 5520618..5520700 | 253..171 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:17:33 has no hits.
BS03808.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:33:15 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:04 Download gff for
BS03808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11024-PA | 1..381 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:34:32 Download gff for
BS03808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 132..522 | 17..405 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:15 Download gff for
BS03808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 132..522 | 17..405 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:15 Download gff for
BS03808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5520391..5520545 | 253..405 | 97 | -> | Minus |
2L | 5520619..5520700 | 171..252 | 100 | -> | Minus |
2L | 5521136..5521289 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:34:32 Download gff for
BS03808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5520391..5520545 | 253..405 | 97 | -> | Minus |
arm_2L | 5520619..5520700 | 171..252 | 100 | -> | Minus |
arm_2L | 5521136..5521289 | 17..170 | 100 | | Minus |
BS03808.5prime Sequence
411 bp (410 high quality bases) assembled on 2005-11-29
> BS03808.5prime
GAAGTTATCAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATG
AGTTCACCAAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCAC
GTCCTCTTCAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTA
CTGCGTCAAGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGG
GCAACTCGCACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAG
GATTTGAACTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTT
GCCCACTCTGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCT
GCTCCAATCAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATTAAAAG
CTTTCTAGACC
BS03808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11024-PA | 381 | cl-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-RC | 674 | CG11024-RC | 200..581 | 16..397 | 1910 | 100 | Plus |
cl-RB | 689 | CG11024-RB | 215..596 | 16..397 | 1910 | 100 | Plus |
cl-RA | 615 | CG11024-RA | 141..522 | 16..397 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5521136..5521289 | 244..397 | 770 | 100 | Plus |
2L | 23513712 | 2L | 5520400..5520545 | 16..161 | 730 | 100 | Plus |
2L | 23513712 | 2L | 5520618..5520700 | 161..243 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:41:00 has no hits.
BS03808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:33:16 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:06 Download gff for
BS03808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11024-PA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:44:07 Download gff for
BS03808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 132..522 | 9..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:40 Download gff for
BS03808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 132..522 | 9..397 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:40 Download gff for
BS03808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5520391..5520545 | 9..161 | 97 | -> | Plus |
2L | 5520619..5520700 | 162..243 | 100 | -> | Plus |
2L | 5521136..5521289 | 244..397 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:44:07 Download gff for
BS03808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5520391..5520545 | 9..161 | 97 | -> | Plus |
arm_2L | 5520619..5520700 | 162..243 | 100 | -> | Plus |
arm_2L | 5521136..5521289 | 244..397 | 100 | | Plus |
BS03808.complete Sequence
413 bp (413 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634772
> BS03808.complete
GAAGTTATCAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATG
AGTTCACCAAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCAC
GTCCTCTTCAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTA
CTGCGTCAAGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGG
GCAACTCGCACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAG
GATTTGAACTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTT
GCCCACTCTGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCT
GCTCCAATCAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATTAAAAG
CTTTCTAGACCAT
BS03808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-RC | 381 | CG11024-PC | 1..381 | 17..397 | 1905 | 100 | Plus |
cl-RB | 381 | CG11024-PB | 1..381 | 17..397 | 1905 | 100 | Plus |
cl-RA | 381 | CG11024-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-RC | 674 | CG11024-RC | 200..581 | 16..397 | 1910 | 100 | Plus |
cl-RB | 689 | CG11024-RB | 215..596 | 16..397 | 1910 | 100 | Plus |
cl-RA | 615 | CG11024-RA | 141..522 | 16..397 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5521136..5521289 | 244..397 | 770 | 100 | Plus |
2L | 23513712 | 2L | 5520400..5520545 | 16..161 | 730 | 100 | Plus |
2L | 23513712 | 2L | 5520618..5520700 | 161..243 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:39:50 has no hits.
BS03808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:47 Download gff for
BS03808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:30 Download gff for
BS03808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 134..524 | 9..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:21 Download gff for
BS03808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 142..520 | 17..395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:47 Download gff for
BS03808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 134..524 | 9..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:18 Download gff for
BS03808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 142..520 | 17..395 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:18 Download gff for
BS03808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5520401..5520545 | 17..161 | 100 | -> | Plus |
2L | 5520619..5520700 | 162..243 | 100 | -> | Plus |
2L | 5521136..5521287 | 244..395 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:21 Download gff for
BS03808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5520401..5520545 | 17..161 | 100 | -> | Plus |
arm_2L | 5520619..5520700 | 162..243 | 100 | -> | Plus |
arm_2L | 5521136..5521287 | 244..395 | 100 | | Plus |
BS03808.pep Sequence
Translation from 16 to 396
> BS03808.pep
MVVTHNVKGYDEFTKKMEELENGDEPVHVLFSGGKDEKGESWCPYCVKAE
PVIHDALKKAPGNSHFVHVDVGERAYWKDLNCPFRKDPNTHLIFLPTLLR
WKRPQRLDGERCSNQDLVEMMFEDED*
BS03808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-PC | 126 | CG11024-PC | 1..126 | 1..126 | 704 | 100 | Plus |
cl-PB | 126 | CG11024-PB | 1..126 | 1..126 | 704 | 100 | Plus |
cl-PA | 126 | CG11024-PA | 1..126 | 1..126 | 704 | 100 | Plus |
CG3939-PB | 135 | CG3939-PB | 8..126 | 8..126 | 224 | 39.2 | Plus |
CG3939-PA | 135 | CG3939-PA | 8..126 | 8..126 | 224 | 39.2 | Plus |