Clone BS03808 Report

Search the DGRC for BS03808

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptcl-RA
Protein status:BS03808.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03808.3prime Sequence

411 bp (410 high quality bases) assembled on 2005-12-01

> BS03808.3prime
ATGGTCTAGAAAGCTTTTAATCCTCATCCTCGAACATCATCTCGACGAGA
TCCTGATTGGAGCAGCGCTCGCCATCCAGACGCTGTGGCCGCTTCCAGCG
CAACAGAGTGGGCAAGAAGATCAGATGCGTGTTGGGATCCTTGCGGAAGG
GGCAGTTCAAATCCTTCCAGTATGCCCGCTCGCCCACATCCACATGCACG
AAGTGCGAGTTGCCCGGGGCCTTCTTCAGCGCATCGTGTATCACCGGCTC
CGCCTTGACGCAGTAGGGGCACCAGCTCTCTCCTTTCTCGTCCTTGCCGC
CACTGAAGAGGACGTGGACCGGCTCGTCGCCGTTCTCCAGTTCCTCCATC
TTTTTGGTGAACTCATCGTATCCCTTGACGTTGTGTGTGACCACCATGTC
GACTGATAACT

BS03808.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11024-PA 381 cl-RA 1..381 397..17 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
cl-RC 674 CG11024-RC 200..581 398..17 1910 100 Minus
cl-RB 689 CG11024-RB 215..596 398..17 1910 100 Minus
cl-RA 615 CG11024-RA 141..522 398..17 1910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5521136..5521289 170..17 770 100 Minus
2L 23513712 2L 5520400..5520545 398..253 730 100 Minus
2L 23513712 2L 5520618..5520700 253..171 415 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:17:33 has no hits.

BS03808.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:33:15 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:04 Download gff for BS03808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11024-PA 1..381 17..397 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:34:32 Download gff for BS03808.3prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 132..522 17..405 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:15 Download gff for BS03808.3prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 132..522 17..405 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:15 Download gff for BS03808.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5520391..5520545 253..405 97 -> Minus
2L 5520619..5520700 171..252 100 -> Minus
2L 5521136..5521289 17..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:34:32 Download gff for BS03808.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5520391..5520545 253..405 97 -> Minus
arm_2L 5520619..5520700 171..252 100 -> Minus
arm_2L 5521136..5521289 17..170 100   Minus

BS03808.5prime Sequence

411 bp (410 high quality bases) assembled on 2005-11-29

> BS03808.5prime
GAAGTTATCAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATG
AGTTCACCAAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCAC
GTCCTCTTCAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTA
CTGCGTCAAGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGG
GCAACTCGCACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAG
GATTTGAACTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTT
GCCCACTCTGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCT
GCTCCAATCAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATTAAAAG
CTTTCTAGACC

BS03808.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11024-PA 381 cl-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
cl-RC 674 CG11024-RC 200..581 16..397 1910 100 Plus
cl-RB 689 CG11024-RB 215..596 16..397 1910 100 Plus
cl-RA 615 CG11024-RA 141..522 16..397 1910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5521136..5521289 244..397 770 100 Plus
2L 23513712 2L 5520400..5520545 16..161 730 100 Plus
2L 23513712 2L 5520618..5520700 161..243 415 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:41:00 has no hits.

BS03808.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:33:16 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:06 Download gff for BS03808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11024-PA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:44:07 Download gff for BS03808.5prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 132..522 9..397 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:40 Download gff for BS03808.5prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 132..522 9..397 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:40 Download gff for BS03808.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5520391..5520545 9..161 97 -> Plus
2L 5520619..5520700 162..243 100 -> Plus
2L 5521136..5521289 244..397 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:44:07 Download gff for BS03808.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5520391..5520545 9..161 97 -> Plus
arm_2L 5520619..5520700 162..243 100 -> Plus
arm_2L 5521136..5521289 244..397 100   Plus

BS03808.complete Sequence

413 bp (413 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634772

> BS03808.complete
GAAGTTATCAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATG
AGTTCACCAAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCAC
GTCCTCTTCAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTA
CTGCGTCAAGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGG
GCAACTCGCACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAG
GATTTGAACTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTT
GCCCACTCTGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCT
GCTCCAATCAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATTAAAAG
CTTTCTAGACCAT

BS03808.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
cl-RC 381 CG11024-PC 1..381 17..397 1905 100 Plus
cl-RB 381 CG11024-PB 1..381 17..397 1905 100 Plus
cl-RA 381 CG11024-PA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
cl-RC 674 CG11024-RC 200..581 16..397 1910 100 Plus
cl-RB 689 CG11024-RB 215..596 16..397 1910 100 Plus
cl-RA 615 CG11024-RA 141..522 16..397 1910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5521136..5521289 244..397 770 100 Plus
2L 23513712 2L 5520400..5520545 16..161 730 100 Plus
2L 23513712 2L 5520618..5520700 161..243 415 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:39:50 has no hits.

BS03808.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:47 Download gff for BS03808.complete
Subject Subject Range Query Range Percent Splice Strand
cl-RA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:30 Download gff for BS03808.complete
Subject Subject Range Query Range Percent Splice Strand
cl-RA 134..524 9..397 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:21 Download gff for BS03808.complete
Subject Subject Range Query Range Percent Splice Strand
cl-RA 142..520 17..395 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:47 Download gff for BS03808.complete
Subject Subject Range Query Range Percent Splice Strand
cl-RA 134..524 9..397 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:18 Download gff for BS03808.complete
Subject Subject Range Query Range Percent Splice Strand
cl-RA 142..520 17..395 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:18 Download gff for BS03808.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5520401..5520545 17..161 100 -> Plus
2L 5520619..5520700 162..243 100 -> Plus
2L 5521136..5521287 244..395 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:21 Download gff for BS03808.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5520401..5520545 17..161 100 -> Plus
arm_2L 5520619..5520700 162..243 100 -> Plus
arm_2L 5521136..5521287 244..395 100   Plus

BS03808.pep Sequence

Translation from 16 to 396

> BS03808.pep
MVVTHNVKGYDEFTKKMEELENGDEPVHVLFSGGKDEKGESWCPYCVKAE
PVIHDALKKAPGNSHFVHVDVGERAYWKDLNCPFRKDPNTHLIFLPTLLR
WKRPQRLDGERCSNQDLVEMMFEDED*

BS03808.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
cl-PC 126 CG11024-PC 1..126 1..126 704 100 Plus
cl-PB 126 CG11024-PB 1..126 1..126 704 100 Plus
cl-PA 126 CG11024-PA 1..126 1..126 704 100 Plus
CG3939-PB 135 CG3939-PB 8..126 8..126 224 39.2 Plus
CG3939-PA 135 CG3939-PA 8..126 8..126 224 39.2 Plus