Clone BS03809 Report

Search the DGRC for BS03809

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG10265-RA
Protein status:BS03809.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03809.3prime Sequence

927 bp (749 high quality bases) assembled on 2005-12-01

> BS03809.3prime
ATGGTCTAGAAAGCTTCTACGATTTTCTTACTTTGGTGCATCTGATGCCC
TTGGATTGCAGTTTTCTCATGATGTCCAAGGTCTCTTGATTTTTGGTTGG
ATTTAGCTCAGTCGTGGCATTCAATTGGGTACTTGCTCGCTTCACCTCCA
CACCGCATGCTCTGAGTTTGTTTAGGATTTTCTGGGTGCCATCCAATGGA
GGAGTTGATTTGCTTGTTATGGTAGGAACTGGTTTCTCGGGCGTCTTGGG
AGGTTCTGGTACTTCAGATATCCTTGAAGAGACTGGTATAATAAGCTTCG
ATGCAGGAGAAAATTTCATGGGTACCAATTGAGATGTTGACTGCGTTGTC
CCGGTAGCACGAGATTGCAATGACCTTACAGGATGTACAGGAGCTGGTGG
TGCCTCTGGAATCCTTTCCTTTTTCTCCGTGTCCTGCAATCGCTTCAGAT
CTTCCAGCACAGTGGGCACCAGAATGATGGCCTTTTTCATCTTTACTGCT
GGCGGTTGAGGGGAAGTCAAGCAGGCACGGGATCTGCGCTGCTGCTGGGA
GGTCAGAATGGTACGTCGGGTGGTGGGAGGGCTACGCGGACGTTTCGCAG
GCACCCCTTCCGGTTCCTGAGGCTCCTTGGCGAGCGGCACTACATCCTCC
TTTACTATATTTTCCTTGGAATTTGTCTTTGGTATGGTCTGCACGGTGGG
CTTGGGATTGGTGTACCAGCGTGGATCCTCCAGCTCTGCCTCCCAATCGA
TGGGCCGTGTTGGTGTTCTTCTTAACCGCCTCCAGGTCGTAGATGTGAAT
CTCCTGTCTGCCATTCACCAGTCTCGTTTCCCGATTGGCATCATCAAATG
CCAGCGGTTCGATCGGCGTTACTATGTATTTTACTCCGGGGCAATCGGCT
AGGTGGCGTTGGAACGATTGGAGCGTC

BS03809.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-PA 1023 CG10265-RA 287..1023 753..17 3685 100 Minus
CG10265-PB 1023 CG10265-RB 287..1023 753..17 3685 100 Minus
CG10265-PA 1023 CG10265-RA 114..288 927..753 875 100 Minus
CG10265-PB 1023 CG10265-RB 114..288 927..753 875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-RA 1230 CG10265-RA 198..1107 927..17 4530 99.9 Minus
CG10265-RC 1368 CG10265-RC 198..799 927..325 2990 99.8 Minus
CG10265-RC 1368 CG10265-RC 798..1054 273..17 1285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14992646..14993430 17..802 3880 99.9 Plus
2R 25286936 2R 14993512..14993638 801..927 635 100 Plus
Blast to na_te.dros performed 2015-02-11 18:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 622..674 250..201 114 71.7 Minus

BS03809.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:17 Download gff for BS03809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-PB 114..1023 17..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:07 Download gff for BS03809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-PB 114..1023 17..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:45:39 Download gff for BS03809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 198..1115 9..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:55:17 Download gff for BS03809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 198..1115 9..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:55:17 Download gff for BS03809.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14992638..14993428 9..800 99 <- Plus
2R 14993512..14993638 801..927 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:45:39 Download gff for BS03809.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10880143..10880933 9..800 99 <- Plus
arm_2R 10881017..10881143 801..927 100   Plus

BS03809.5prime Sequence

828 bp (684 high quality bases) assembled on 2005-11-29

> BS03809.5prime
GAAGTTATCAGTCGACATGAATGGATCGCGTAAAATAAAGTCCATGAAGA
CGATTCGCCTTGGCGACGTTCTATACGACGACCAAAAACGACTTCTAACG
CTGTGCCGCAGCTGCGAATGCCACTTTATGACGCTCCAATCGTTCCAACG
CCACCTAGCCGATTGCCCCGGAGTAAAATACATAGTAACGCCGATCGAAC
CGCTGGCATTTGATGATGCCAATCGGGAAACGAGACTGGTGAATGGCAGA
CAGGAGATTCACATCTACGACCTGGAGGCGGTTAAGAAGAACACCAACAC
GGCCATCGATTGGGAGGCAGAGCTGGAGGATCCACGCTGGTACACCAATC
CCAAGCCCACCGTGCAGACCATACCAAAGACAAATTCCAAGGAAAATATA
GTAAAGGAGGATGTAGTGCCGCTCGCCAAGGAGCCTCAGGAACCGGAAGG
GGTGCCTGCGAAACGTCCGCGTAGCCCTCCCACCACCCGACGTACCATTC
TGACCTCCCAGCAGCAGCGCAGATCCCGTGCCTGCTTGACTTCCCCTCAA
CCGCCAGCAGTAAAGATGAAAAAGGCCATCATTCTGGTGCCCACTGTGCT
GGAAGATCTGAAGCGATTGCAGGACACGGAGAANAAGGAAAGGATTCCAG
AGGCACCACCAGCTCCTGTACATCCTGTAAGGTCATTGGCATCTCGTGCT
ACCGGGACAACGCAGTCAACATCTCAATTGGTACCCATGAAATTTTCTCC
TGCATCGAAGCTTATTATACCAGTCTCTTCAAGGATATCTGAAGTACCAG
ACCCTCCCAAGACGCCCGAGAAACCAGT

BS03809.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-PA 1023 CG10265-RA 1..812 17..828 3966 99.5 Plus
CG10265-PB 1023 CG10265-RB 1..812 17..828 3966 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-RA 1230 CG10265-RA 85..896 17..828 4004 99.5 Plus
CG10265-RC 1368 CG10265-RC 85..799 17..731 3534 99.6 Plus
CG10265-RC 1368 CG10265-RC 798..843 783..828 215 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14992857..14993430 828..255 2814 99.3 Minus
2R 25286936 2R 14993512..14993751 256..17 1200 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:42:45 has no hits.

BS03809.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:18 Download gff for BS03809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-PB 1..812 17..828 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:09 Download gff for BS03809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-PB 1..812 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 11:00:27 Download gff for BS03809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 85..896 17..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:14:49 Download gff for BS03809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 85..896 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:49 Download gff for BS03809.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14992857..14993428 257..828 99 <- Minus
2R 14993512..14993751 17..256 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 11:00:27 Download gff for BS03809.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10880362..10880933 257..828 99 <- Minus
arm_2R 10881017..10881256 17..256 100   Minus

BS03809.complete Sequence

1055 bp (1055 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634773

> BS03809.complete
GAAGTTATCAGTCGACATGAATGGATCGCGTAAAATAAAGTCCATGAAGA
CGATTCGCCTTGGCGACGTTCTATACGACGACCAAAAACGACTTCTAACG
CTGTGCCGCAGCTGCGAATGCCACTTTATGACGCTCCAATCGTTCCAACG
CCACCTAGCCGATTGCCCCGGAGTAAAATACATAGTAACGCCGATCGAAC
CGCTGGCATTTGATGATGCCAATCGGGAAACGAGACTGGTGAATGGCAGA
CAGGAGATTCACATCTACGACCTGGAGGCGGTTAAGAAGAACACCAACAC
GGCCATCGATTGGGAGGCAGAGCTGGAGGATCCACGCTGGTACACCAATC
CCAAGCCCACCGTGCAGACCATACCAAAGACAAATTCCAAGGAAAATATA
GTAAAGGAGGATGTAGTGCCGCTCGCCAAGGAGCCTCAGGAACCGGAAGG
GGTGCCTGCGAAACGTCCGCGTAGCCCTCCCACCACCCGACGTACCATTC
TGACCTCCCAGCAGCAGCGCAGATCCCGTGCCTGCTTGACTTCCCCTCAA
CCGCCAGCAGTAAAGATGAAAAAGGCCATCATTCTGGTGCCCACTGTGCT
GGAAGATCTGAAGCGATTGCAGGACACGGAGAAAAAGGAAAGGATTCCAG
AGGCACCACCAGCTCCTGTACATCCTGTAAGGTCATTGCAATCTCGTGCT
ACCGGGACAACGCAGTCAACATCTCAATTGGTACCCATGAAATTTTCTCC
TGCATCGAAGCTTATTATACCAGTCTCTTCAAGGATATCTGAAGTACCAG
AACCTCCCAAGACGCCCGAGAAACCAGTTCCTACCATAACAAGCAAATCA
ACTCCTCCATTGGATGGCACCCAGAAAATCCTAAACAAACTCAGAGCATG
CGGTGTGGAGGTGAAGCGAGCAAGTACCCAATTGAATGCCACGACTGAGC
TAAATCCAACCAAAAATCAAGAGACCTTGGACATCATGAGAAAACTGCAA
TCCAAGGGCATCAGATGCACCAAAGTAAGAAAATCGTAGAAGCTTTCTAG
ACCAT

BS03809.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-RA 1023 CG10265-PA 1..1023 17..1039 5115 100 Plus
CG10265-RC 723 CG10265-PC 1..715 17..731 3575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-RA 1230 CG10265-RA 85..1107 17..1039 5115 100 Plus
CG10265-RC 1368 CG10265-RC 85..799 17..731 3575 100 Plus
CG10265-RC 1368 CG10265-RC 798..1054 783..1039 1285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14992646..14993430 1039..255 3925 100 Minus
2R 25286936 2R 14993512..14993751 256..17 1200 100 Minus
Blast to na_te.dros performed 2014-11-27 20:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 622..674 806..855 114 71.7 Plus

BS03809.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:47 Download gff for BS03809.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RB 1..1023 17..1039 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:38 Download gff for BS03809.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RB 744..1774 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:15 Download gff for BS03809.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 85..1107 17..1039 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:47 Download gff for BS03809.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RB 744..1774 17..1047 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:02 Download gff for BS03809.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 85..1107 17..1039 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:02 Download gff for BS03809.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14992646..14993428 257..1039 100 <- Minus
2R 14993512..14993751 17..256 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:15 Download gff for BS03809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10880151..10880933 257..1039 100 <- Minus
arm_2R 10881017..10881256 17..256 100   Minus

BS03809.pep Sequence

Translation from 16 to 1038

> BS03809.pep
MNGSRKIKSMKTIRLGDVLYDDQKRLLTLCRSCECHFMTLQSFQRHLADC
PGVKYIVTPIEPLAFDDANRETRLVNGRQEIHIYDLEAVKKNTNTAIDWE
AELEDPRWYTNPKPTVQTIPKTNSKENIVKEDVVPLAKEPQEPEGVPAKR
PRSPPTTRRTILTSQQQRRSRACLTSPQPPAVKMKKAIILVPTVLEDLKR
LQDTEKKERIPEAPPAPVHPVRSLQSRATGTTQSTSQLVPMKFSPASKLI
IPVSSRISEVPEPPKTPEKPVPTITSKSTPPLDGTQKILNKLRACGVEVK
RASTQLNATTELNPTKNQETLDIMRKLQSKGIRCTKVRKS*

BS03809.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-PA 340 CG10265-PA 1..340 1..340 1758 100 Plus
CG10265-PC 240 CG10265-PC 1..238 1..238 1242 100 Plus