Clone Sequence Records
BS03809.3prime Sequence
927 bp (749 high quality bases) assembled on 2005-12-01
> BS03809.3prime
ATGGTCTAGAAAGCTTCTACGATTTTCTTACTTTGGTGCATCTGATGCCC
TTGGATTGCAGTTTTCTCATGATGTCCAAGGTCTCTTGATTTTTGGTTGG
ATTTAGCTCAGTCGTGGCATTCAATTGGGTACTTGCTCGCTTCACCTCCA
CACCGCATGCTCTGAGTTTGTTTAGGATTTTCTGGGTGCCATCCAATGGA
GGAGTTGATTTGCTTGTTATGGTAGGAACTGGTTTCTCGGGCGTCTTGGG
AGGTTCTGGTACTTCAGATATCCTTGAAGAGACTGGTATAATAAGCTTCG
ATGCAGGAGAAAATTTCATGGGTACCAATTGAGATGTTGACTGCGTTGTC
CCGGTAGCACGAGATTGCAATGACCTTACAGGATGTACAGGAGCTGGTGG
TGCCTCTGGAATCCTTTCCTTTTTCTCCGTGTCCTGCAATCGCTTCAGAT
CTTCCAGCACAGTGGGCACCAGAATGATGGCCTTTTTCATCTTTACTGCT
GGCGGTTGAGGGGAAGTCAAGCAGGCACGGGATCTGCGCTGCTGCTGGGA
GGTCAGAATGGTACGTCGGGTGGTGGGAGGGCTACGCGGACGTTTCGCAG
GCACCCCTTCCGGTTCCTGAGGCTCCTTGGCGAGCGGCACTACATCCTCC
TTTACTATATTTTCCTTGGAATTTGTCTTTGGTATGGTCTGCACGGTGGG
CTTGGGATTGGTGTACCAGCGTGGATCCTCCAGCTCTGCCTCCCAATCGA
TGGGCCGTGTTGGTGTTCTTCTTAACCGCCTCCAGGTCGTAGATGTGAAT
CTCCTGTCTGCCATTCACCAGTCTCGTTTCCCGATTGGCATCATCAAATG
CCAGCGGTTCGATCGGCGTTACTATGTATTTTACTCCGGGGCAATCGGCT
AGGTGGCGTTGGAACGATTGGAGCGTC
BS03809.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-PA | 1023 | CG10265-RA | 287..1023 | 753..17 | 3685 | 100 | Minus |
CG10265-PB | 1023 | CG10265-RB | 287..1023 | 753..17 | 3685 | 100 | Minus |
CG10265-PA | 1023 | CG10265-RA | 114..288 | 927..753 | 875 | 100 | Minus |
CG10265-PB | 1023 | CG10265-RB | 114..288 | 927..753 | 875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-RA | 1230 | CG10265-RA | 198..1107 | 927..17 | 4530 | 99.9 | Minus |
CG10265-RC | 1368 | CG10265-RC | 198..799 | 927..325 | 2990 | 99.8 | Minus |
CG10265-RC | 1368 | CG10265-RC | 798..1054 | 273..17 | 1285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14992646..14993430 | 17..802 | 3880 | 99.9 | Plus |
2R | 25286936 | 2R | 14993512..14993638 | 801..927 | 635 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 18:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 622..674 | 250..201 | 114 | 71.7 | Minus |
BS03809.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:17 Download gff for
BS03809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-PB | 114..1023 | 17..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:07 Download gff for
BS03809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-PB | 114..1023 | 17..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:45:39 Download gff for
BS03809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 198..1115 | 9..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:55:17 Download gff for
BS03809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 198..1115 | 9..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:55:17 Download gff for
BS03809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14992638..14993428 | 9..800 | 99 | <- | Plus |
2R | 14993512..14993638 | 801..927 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:45:39 Download gff for
BS03809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10880143..10880933 | 9..800 | 99 | <- | Plus |
arm_2R | 10881017..10881143 | 801..927 | 100 | | Plus |
BS03809.5prime Sequence
828 bp (684 high quality bases) assembled on 2005-11-29
> BS03809.5prime
GAAGTTATCAGTCGACATGAATGGATCGCGTAAAATAAAGTCCATGAAGA
CGATTCGCCTTGGCGACGTTCTATACGACGACCAAAAACGACTTCTAACG
CTGTGCCGCAGCTGCGAATGCCACTTTATGACGCTCCAATCGTTCCAACG
CCACCTAGCCGATTGCCCCGGAGTAAAATACATAGTAACGCCGATCGAAC
CGCTGGCATTTGATGATGCCAATCGGGAAACGAGACTGGTGAATGGCAGA
CAGGAGATTCACATCTACGACCTGGAGGCGGTTAAGAAGAACACCAACAC
GGCCATCGATTGGGAGGCAGAGCTGGAGGATCCACGCTGGTACACCAATC
CCAAGCCCACCGTGCAGACCATACCAAAGACAAATTCCAAGGAAAATATA
GTAAAGGAGGATGTAGTGCCGCTCGCCAAGGAGCCTCAGGAACCGGAAGG
GGTGCCTGCGAAACGTCCGCGTAGCCCTCCCACCACCCGACGTACCATTC
TGACCTCCCAGCAGCAGCGCAGATCCCGTGCCTGCTTGACTTCCCCTCAA
CCGCCAGCAGTAAAGATGAAAAAGGCCATCATTCTGGTGCCCACTGTGCT
GGAAGATCTGAAGCGATTGCAGGACACGGAGAANAAGGAAAGGATTCCAG
AGGCACCACCAGCTCCTGTACATCCTGTAAGGTCATTGGCATCTCGTGCT
ACCGGGACAACGCAGTCAACATCTCAATTGGTACCCATGAAATTTTCTCC
TGCATCGAAGCTTATTATACCAGTCTCTTCAAGGATATCTGAAGTACCAG
ACCCTCCCAAGACGCCCGAGAAACCAGT
BS03809.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-PA | 1023 | CG10265-RA | 1..812 | 17..828 | 3966 | 99.5 | Plus |
CG10265-PB | 1023 | CG10265-RB | 1..812 | 17..828 | 3966 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-RA | 1230 | CG10265-RA | 85..896 | 17..828 | 4004 | 99.5 | Plus |
CG10265-RC | 1368 | CG10265-RC | 85..799 | 17..731 | 3534 | 99.6 | Plus |
CG10265-RC | 1368 | CG10265-RC | 798..843 | 783..828 | 215 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14992857..14993430 | 828..255 | 2814 | 99.3 | Minus |
2R | 25286936 | 2R | 14993512..14993751 | 256..17 | 1200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:42:45 has no hits.
BS03809.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:18 Download gff for
BS03809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-PB | 1..812 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:09 Download gff for
BS03809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-PB | 1..812 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 11:00:27 Download gff for
BS03809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 85..896 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:14:49 Download gff for
BS03809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 85..896 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:49 Download gff for
BS03809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14992857..14993428 | 257..828 | 99 | <- | Minus |
2R | 14993512..14993751 | 17..256 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 11:00:27 Download gff for
BS03809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10880362..10880933 | 257..828 | 99 | <- | Minus |
arm_2R | 10881017..10881256 | 17..256 | 100 | | Minus |
BS03809.complete Sequence
1055 bp (1055 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634773
> BS03809.complete
GAAGTTATCAGTCGACATGAATGGATCGCGTAAAATAAAGTCCATGAAGA
CGATTCGCCTTGGCGACGTTCTATACGACGACCAAAAACGACTTCTAACG
CTGTGCCGCAGCTGCGAATGCCACTTTATGACGCTCCAATCGTTCCAACG
CCACCTAGCCGATTGCCCCGGAGTAAAATACATAGTAACGCCGATCGAAC
CGCTGGCATTTGATGATGCCAATCGGGAAACGAGACTGGTGAATGGCAGA
CAGGAGATTCACATCTACGACCTGGAGGCGGTTAAGAAGAACACCAACAC
GGCCATCGATTGGGAGGCAGAGCTGGAGGATCCACGCTGGTACACCAATC
CCAAGCCCACCGTGCAGACCATACCAAAGACAAATTCCAAGGAAAATATA
GTAAAGGAGGATGTAGTGCCGCTCGCCAAGGAGCCTCAGGAACCGGAAGG
GGTGCCTGCGAAACGTCCGCGTAGCCCTCCCACCACCCGACGTACCATTC
TGACCTCCCAGCAGCAGCGCAGATCCCGTGCCTGCTTGACTTCCCCTCAA
CCGCCAGCAGTAAAGATGAAAAAGGCCATCATTCTGGTGCCCACTGTGCT
GGAAGATCTGAAGCGATTGCAGGACACGGAGAAAAAGGAAAGGATTCCAG
AGGCACCACCAGCTCCTGTACATCCTGTAAGGTCATTGCAATCTCGTGCT
ACCGGGACAACGCAGTCAACATCTCAATTGGTACCCATGAAATTTTCTCC
TGCATCGAAGCTTATTATACCAGTCTCTTCAAGGATATCTGAAGTACCAG
AACCTCCCAAGACGCCCGAGAAACCAGTTCCTACCATAACAAGCAAATCA
ACTCCTCCATTGGATGGCACCCAGAAAATCCTAAACAAACTCAGAGCATG
CGGTGTGGAGGTGAAGCGAGCAAGTACCCAATTGAATGCCACGACTGAGC
TAAATCCAACCAAAAATCAAGAGACCTTGGACATCATGAGAAAACTGCAA
TCCAAGGGCATCAGATGCACCAAAGTAAGAAAATCGTAGAAGCTTTCTAG
ACCAT
BS03809.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-RA | 1023 | CG10265-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG10265-RC | 723 | CG10265-PC | 1..715 | 17..731 | 3575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-RA | 1230 | CG10265-RA | 85..1107 | 17..1039 | 5115 | 100 | Plus |
CG10265-RC | 1368 | CG10265-RC | 85..799 | 17..731 | 3575 | 100 | Plus |
CG10265-RC | 1368 | CG10265-RC | 798..1054 | 783..1039 | 1285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14992646..14993430 | 1039..255 | 3925 | 100 | Minus |
2R | 25286936 | 2R | 14993512..14993751 | 256..17 | 1200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 622..674 | 806..855 | 114 | 71.7 | Plus |
BS03809.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:47 Download gff for
BS03809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RB | 1..1023 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:38 Download gff for
BS03809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RB | 744..1774 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:15 Download gff for
BS03809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 85..1107 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:47 Download gff for
BS03809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RB | 744..1774 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:02 Download gff for
BS03809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10265-RA | 85..1107 | 17..1039 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:02 Download gff for
BS03809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14992646..14993428 | 257..1039 | 100 | <- | Minus |
2R | 14993512..14993751 | 17..256 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:15 Download gff for
BS03809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10880151..10880933 | 257..1039 | 100 | <- | Minus |
arm_2R | 10881017..10881256 | 17..256 | 100 | | Minus |
BS03809.pep Sequence
Translation from 16 to 1038
> BS03809.pep
MNGSRKIKSMKTIRLGDVLYDDQKRLLTLCRSCECHFMTLQSFQRHLADC
PGVKYIVTPIEPLAFDDANRETRLVNGRQEIHIYDLEAVKKNTNTAIDWE
AELEDPRWYTNPKPTVQTIPKTNSKENIVKEDVVPLAKEPQEPEGVPAKR
PRSPPTTRRTILTSQQQRRSRACLTSPQPPAVKMKKAIILVPTVLEDLKR
LQDTEKKERIPEAPPAPVHPVRSLQSRATGTTQSTSQLVPMKFSPASKLI
IPVSSRISEVPEPPKTPEKPVPTITSKSTPPLDGTQKILNKLRACGVEVK
RASTQLNATTELNPTKNQETLDIMRKLQSKGIRCTKVRKS*
BS03809.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10265-PA | 340 | CG10265-PA | 1..340 | 1..340 | 1758 | 100 | Plus |
CG10265-PC | 240 | CG10265-PC | 1..238 | 1..238 | 1242 | 100 | Plus |