Clone Sequence Records
BS03810.3prime Sequence
711 bp (710 high quality bases) assembled on 2005-12-01
> BS03810.3prime
ATGGTCTAGAAAGCTTCTACTTCTTTTTGGGGAAGATTAGATCCTTTGCC
TCATCGTACAGGTCACTGGCCATGTACTTAAGGTCCTCCAGCGAGGTAGG
GAAGGGCACTACGGGAACATCCTCTCCTGGCTTTACGCCCTTGATGAAGT
TGTAGGCCACGGCGAAGATCTTACGGCCCTCGTAGAGTACCACGCGGCAG
TTTTCTTCCGCCTGGCGGGGGTAGCACATGGAGGCGACTGCACCTGCTCC
GATGCCCGAATACAACACCTTCTTTATGAAGCCTCCACGGGCGGCGAAGA
TGAAACCAGCCAGACCGCCCACCACAATGGCTCCGCTGCGGTGCAGGGAG
TTCTGGGGCTCGTTCAGCATGTCGATGGTGGACTGGGTGTGTGCCTTAGC
GGTTTCCACGTAATGGCCGACAATGCCGGCTTGATCGGCCACTGCCTTAT
ATCCAGACTGCACCTCCTCGCGCACATAGCGGACTCCGGCCTCCAGGTTC
TTGTGCAGCACAGAGTCTTGTGGTGGATGCCGTTCTGGCTTGGGTTCTGT
CTTGCGCAAGCTGCCGTAGATGGGCAGCTCGCTGGGCCGGCACACCAGGC
TGCAGTCCGCCGCACTGGAGGCTGGTTTCTGGGGCTCGGGAGCCGCTTTA
ACGGCAACCGCCGCCATGATTCCCATCGTTGCCGTTTTGCGCAGCATGTC
GACTGATAACT
BS03810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-PA | 681 | CG5903-RA | 1..681 | 697..17 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-RC | 2392 | CG5903-RC | 277..962 | 702..17 | 3415 | 99.9 | Minus |
CG5903-RB | 995 | CG5903-RB | 164..849 | 702..17 | 3415 | 99.9 | Minus |
CG5903-RA | 1487 | CG5903-RA | 277..962 | 702..17 | 3415 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16145831..16146359 | 17..545 | 2645 | 100 | Plus |
3R | 32079331 | 3R | 16146423..16146579 | 546..702 | 770 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:24:20 has no hits.
BS03810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:19 Download gff for
BS03810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-PA | 1..681 | 17..697 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:10 Download gff for
BS03810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-PA | 1..681 | 17..697 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:19:49 Download gff for
BS03810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..966 | 14..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:42 Download gff for
BS03810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..966 | 14..702 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:42 Download gff for
BS03810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16145827..16146359 | 14..545 | 99 | <- | Plus |
3R | 16146423..16146579 | 546..702 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:19:49 Download gff for
BS03810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11971549..11972081 | 14..545 | 99 | <- | Plus |
arm_3R | 11972145..11972301 | 546..702 | 99 | | Plus |
BS03810.5prime Sequence
711 bp (710 high quality bases) assembled on 2005-11-29
> BS03810.5prime
GAAGTTATCAGTCGACATGCTGCGCAAAACGGCAACGATGGGAATCATGG
CGGCGGTTGCCGTTAAAGCGGCTCCCGAGCCCCAGAAACCAGCCTCCAGT
GCGGCGGACTGCAGCCTGGTGTGCCGGCCCAGCGAGCTGCCCATCTACGG
CAGCTTGCGCAAGACAGAACCCAAGCCAGAACGGCATCCACCACAAGACT
CTGTGCTGCACAAGAACCTGGAGGCCGGAGTCCGCTATGTGCGCGAGGAG
GTGCAGTCTGGATATAAGGCAGTGGCCGATCAAGCCGGCATTGTCGGCCA
TTACGTGGAAACCGCTAAGGCACACACCCAGTCCACCATCGACATGCTGA
ACGAGCCCCAGAACTCCCTGCACCGCAGCGGAGCCATTGTGGTGGGCGGT
CTGGCTGGTTTCATCTTCGCCGCCCGTGGAGGCTTCATAAAGAAGGTGTT
GTATTCGGGCATCGGAGCAGGTGCAGTCGCCTCCATGTGCTACCCCCGCC
AGGCGGAAGAAAACTGCCGCGTGGTACTCTACGAGGGCCGTAAGATCTTC
GCCGTGGCCTACAACTTCATCAAGGGCGTAAAGCCAGGAGAGGATGTTCC
CGTAGTGCCCTTCCCTACCTCGCTGGAGGACCTTAAGTACATGGCCAGTG
ACCTGTACGATGAGGCAAAGGATCTAATCTTCCCCAAAAAGAAGTAGAAG
CTTTCTAGACC
BS03810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-PA | 681 | CG5903-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-RC | 2392 | CG5903-RC | 277..962 | 12..697 | 3415 | 99.9 | Plus |
CG5903-RB | 995 | CG5903-RB | 164..849 | 12..697 | 3415 | 99.9 | Plus |
CG5903-RA | 1487 | CG5903-RA | 277..962 | 12..697 | 3415 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16145831..16146359 | 697..169 | 2645 | 100 | Minus |
3R | 32079331 | 3R | 16146423..16146579 | 168..12 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:44:25 has no hits.
BS03810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:20 Download gff for
BS03810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:11 Download gff for
BS03810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:52:03 Download gff for
BS03810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..966 | 12..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:31 Download gff for
BS03810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..966 | 12..700 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:31 Download gff for
BS03810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16145827..16146359 | 169..700 | 99 | <- | Minus |
3R | 16146423..16146579 | 12..168 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:52:03 Download gff for
BS03810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11971549..11972081 | 169..700 | 99 | <- | Minus |
arm_3R | 11972145..11972301 | 12..168 | 99 | | Minus |
BS03810.complete Sequence
713 bp (713 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634774
> BS03810.complete
GAAGTTATCAGTCGACATGCTGCGCAAAACGGCAACGATGGGAATCATGG
CGGCGGTTGCCGTTAAAGCGGCTCCCGAGCCCCAGAAACCAGCCTCCAGT
GCGGCGGACTGCAGCCTGGTGTGCCGGCCCAGCGAGCTGCCCATCTACGG
CAGCTTGCGCAAGACAGAACCCAAGCCAGAACGGCATCCACCACAAGACT
CTGTGCTGCACAAGAACCTGGAGGCCGGAGTCCGCTATGTGCGCGAGGAG
GTGCAGTCTGGATATAAGGCAGTGGCCGATCAAGCCGGCATTGTCGGCCA
TTACGTGGAAACCGCTAAGGCACACACCCAGTCCACCATCGACATGCTGA
ACGAGCCCCAGAACTCCCTGCACCGCAGCGGAGCCATTGTGGTGGGCGGT
CTGGCTGGTTTCATCTTCGCCGCCCGTGGAGGCTTCATAAAGAAGGTGTT
GTATTCGGGCATCGGAGCAGGTGCAGTCGCCTCCATGTGCTACCCCCGCC
AGGCGGAAGAAAACTGCCGCGTGGTACTCTACGAGGGCCGTAAGATCTTC
GCCGTGGCCTACAACTTCATCAAGGGCGTAAAGCCAGGAGAGGATGTTCC
CGTAGTGCCCTTCCCTACCTCGCTGGAGGACCTTAAGTACATGGCCAGTG
ACCTGTACGATGAGGCAAAGGATCTAATCTTCCCCAAAAAGAAGTAGAAG
CTTTCTAGACCAT
BS03810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-RC | 681 | CG5903-PC | 1..681 | 17..697 | 3405 | 100 | Plus |
CG5903-RB | 681 | CG5903-PB | 1..681 | 17..697 | 3405 | 100 | Plus |
CG5903-RA | 681 | CG5903-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-RC | 2392 | CG5903-RC | 277..962 | 12..697 | 3415 | 99.9 | Plus |
CG5903-RB | 995 | CG5903-RB | 164..849 | 12..697 | 3415 | 99.9 | Plus |
CG5903-RA | 1487 | CG5903-RA | 277..962 | 12..697 | 3415 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16145831..16146359 | 697..169 | 2645 | 100 | Minus |
3R | 32079331 | 3R | 16146423..16146579 | 168..12 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:45:35 has no hits.
BS03810.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:48 Download gff for
BS03810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:40 Download gff for
BS03810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..966 | 12..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:06 Download gff for
BS03810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 282..962 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:48 Download gff for
BS03810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 277..966 | 12..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:17 Download gff for
BS03810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5903-RA | 282..962 | 17..697 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:17 Download gff for
BS03810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16146423..16146574 | 17..168 | 100 | | Minus |
3R | 16145831..16146359 | 169..697 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:06 Download gff for
BS03810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11971553..11972081 | 169..697 | 100 | <- | Minus |
arm_3R | 11972145..11972296 | 17..168 | 100 | | Minus |
BS03810.pep Sequence
Translation from 16 to 696
> BS03810.pep
MLRKTATMGIMAAVAVKAAPEPQKPASSAADCSLVCRPSELPIYGSLRKT
EPKPERHPPQDSVLHKNLEAGVRYVREEVQSGYKAVADQAGIVGHYVETA
KAHTQSTIDMLNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGIG
AGAVASMCYPRQAEENCRVVLYEGRKIFAVAYNFIKGVKPGEDVPVVPFP
TSLEDLKYMASDLYDEAKDLIFPKKK*
BS03810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5903-PC | 226 | CG5903-PC | 1..226 | 1..226 | 1164 | 100 | Plus |
CG5903-PB | 226 | CG5903-PB | 1..226 | 1..226 | 1164 | 100 | Plus |
CG5903-PA | 226 | CG5903-PA | 1..226 | 1..226 | 1164 | 100 | Plus |