Clone BS03810 Report

Search the DGRC for BS03810

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG5903-RA
Protein status:BS03810.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03810.3prime Sequence

711 bp (710 high quality bases) assembled on 2005-12-01

> BS03810.3prime
ATGGTCTAGAAAGCTTCTACTTCTTTTTGGGGAAGATTAGATCCTTTGCC
TCATCGTACAGGTCACTGGCCATGTACTTAAGGTCCTCCAGCGAGGTAGG
GAAGGGCACTACGGGAACATCCTCTCCTGGCTTTACGCCCTTGATGAAGT
TGTAGGCCACGGCGAAGATCTTACGGCCCTCGTAGAGTACCACGCGGCAG
TTTTCTTCCGCCTGGCGGGGGTAGCACATGGAGGCGACTGCACCTGCTCC
GATGCCCGAATACAACACCTTCTTTATGAAGCCTCCACGGGCGGCGAAGA
TGAAACCAGCCAGACCGCCCACCACAATGGCTCCGCTGCGGTGCAGGGAG
TTCTGGGGCTCGTTCAGCATGTCGATGGTGGACTGGGTGTGTGCCTTAGC
GGTTTCCACGTAATGGCCGACAATGCCGGCTTGATCGGCCACTGCCTTAT
ATCCAGACTGCACCTCCTCGCGCACATAGCGGACTCCGGCCTCCAGGTTC
TTGTGCAGCACAGAGTCTTGTGGTGGATGCCGTTCTGGCTTGGGTTCTGT
CTTGCGCAAGCTGCCGTAGATGGGCAGCTCGCTGGGCCGGCACACCAGGC
TGCAGTCCGCCGCACTGGAGGCTGGTTTCTGGGGCTCGGGAGCCGCTTTA
ACGGCAACCGCCGCCATGATTCCCATCGTTGCCGTTTTGCGCAGCATGTC
GACTGATAACT

BS03810.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-PA 681 CG5903-RA 1..681 697..17 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-RC 2392 CG5903-RC 277..962 702..17 3415 99.9 Minus
CG5903-RB 995 CG5903-RB 164..849 702..17 3415 99.9 Minus
CG5903-RA 1487 CG5903-RA 277..962 702..17 3415 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16145831..16146359 17..545 2645 100 Plus
3R 32079331 3R 16146423..16146579 546..702 770 99.4 Plus
Blast to na_te.dros performed on 2015-02-10 19:24:20 has no hits.

BS03810.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:19 Download gff for BS03810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-PA 1..681 17..697 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:10 Download gff for BS03810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-PA 1..681 17..697 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:19:49 Download gff for BS03810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..966 14..702 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:42 Download gff for BS03810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..966 14..702 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:42 Download gff for BS03810.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16145827..16146359 14..545 99 <- Plus
3R 16146423..16146579 546..702 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:19:49 Download gff for BS03810.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11971549..11972081 14..545 99 <- Plus
arm_3R 11972145..11972301 546..702 99   Plus

BS03810.5prime Sequence

711 bp (710 high quality bases) assembled on 2005-11-29

> BS03810.5prime
GAAGTTATCAGTCGACATGCTGCGCAAAACGGCAACGATGGGAATCATGG
CGGCGGTTGCCGTTAAAGCGGCTCCCGAGCCCCAGAAACCAGCCTCCAGT
GCGGCGGACTGCAGCCTGGTGTGCCGGCCCAGCGAGCTGCCCATCTACGG
CAGCTTGCGCAAGACAGAACCCAAGCCAGAACGGCATCCACCACAAGACT
CTGTGCTGCACAAGAACCTGGAGGCCGGAGTCCGCTATGTGCGCGAGGAG
GTGCAGTCTGGATATAAGGCAGTGGCCGATCAAGCCGGCATTGTCGGCCA
TTACGTGGAAACCGCTAAGGCACACACCCAGTCCACCATCGACATGCTGA
ACGAGCCCCAGAACTCCCTGCACCGCAGCGGAGCCATTGTGGTGGGCGGT
CTGGCTGGTTTCATCTTCGCCGCCCGTGGAGGCTTCATAAAGAAGGTGTT
GTATTCGGGCATCGGAGCAGGTGCAGTCGCCTCCATGTGCTACCCCCGCC
AGGCGGAAGAAAACTGCCGCGTGGTACTCTACGAGGGCCGTAAGATCTTC
GCCGTGGCCTACAACTTCATCAAGGGCGTAAAGCCAGGAGAGGATGTTCC
CGTAGTGCCCTTCCCTACCTCGCTGGAGGACCTTAAGTACATGGCCAGTG
ACCTGTACGATGAGGCAAAGGATCTAATCTTCCCCAAAAAGAAGTAGAAG
CTTTCTAGACC

BS03810.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-PA 681 CG5903-RA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-RC 2392 CG5903-RC 277..962 12..697 3415 99.9 Plus
CG5903-RB 995 CG5903-RB 164..849 12..697 3415 99.9 Plus
CG5903-RA 1487 CG5903-RA 277..962 12..697 3415 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16145831..16146359 697..169 2645 100 Minus
3R 32079331 3R 16146423..16146579 168..12 770 99.4 Minus
Blast to na_te.dros performed on 2015-02-11 17:44:25 has no hits.

BS03810.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:20 Download gff for BS03810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-PA 1..681 17..697 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:11 Download gff for BS03810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-PA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:52:03 Download gff for BS03810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..966 12..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:31 Download gff for BS03810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..966 12..700 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:31 Download gff for BS03810.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16145827..16146359 169..700 99 <- Minus
3R 16146423..16146579 12..168 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:52:03 Download gff for BS03810.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11971549..11972081 169..700 99 <- Minus
arm_3R 11972145..11972301 12..168 99   Minus

BS03810.complete Sequence

713 bp (713 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634774

> BS03810.complete
GAAGTTATCAGTCGACATGCTGCGCAAAACGGCAACGATGGGAATCATGG
CGGCGGTTGCCGTTAAAGCGGCTCCCGAGCCCCAGAAACCAGCCTCCAGT
GCGGCGGACTGCAGCCTGGTGTGCCGGCCCAGCGAGCTGCCCATCTACGG
CAGCTTGCGCAAGACAGAACCCAAGCCAGAACGGCATCCACCACAAGACT
CTGTGCTGCACAAGAACCTGGAGGCCGGAGTCCGCTATGTGCGCGAGGAG
GTGCAGTCTGGATATAAGGCAGTGGCCGATCAAGCCGGCATTGTCGGCCA
TTACGTGGAAACCGCTAAGGCACACACCCAGTCCACCATCGACATGCTGA
ACGAGCCCCAGAACTCCCTGCACCGCAGCGGAGCCATTGTGGTGGGCGGT
CTGGCTGGTTTCATCTTCGCCGCCCGTGGAGGCTTCATAAAGAAGGTGTT
GTATTCGGGCATCGGAGCAGGTGCAGTCGCCTCCATGTGCTACCCCCGCC
AGGCGGAAGAAAACTGCCGCGTGGTACTCTACGAGGGCCGTAAGATCTTC
GCCGTGGCCTACAACTTCATCAAGGGCGTAAAGCCAGGAGAGGATGTTCC
CGTAGTGCCCTTCCCTACCTCGCTGGAGGACCTTAAGTACATGGCCAGTG
ACCTGTACGATGAGGCAAAGGATCTAATCTTCCCCAAAAAGAAGTAGAAG
CTTTCTAGACCAT

BS03810.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-RC 681 CG5903-PC 1..681 17..697 3405 100 Plus
CG5903-RB 681 CG5903-PB 1..681 17..697 3405 100 Plus
CG5903-RA 681 CG5903-PA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-RC 2392 CG5903-RC 277..962 12..697 3415 99.9 Plus
CG5903-RB 995 CG5903-RB 164..849 12..697 3415 99.9 Plus
CG5903-RA 1487 CG5903-RA 277..962 12..697 3415 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16145831..16146359 697..169 2645 100 Minus
3R 32079331 3R 16146423..16146579 168..12 770 99.4 Minus
Blast to na_te.dros performed on 2014-11-27 13:45:35 has no hits.

BS03810.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:48 Download gff for BS03810.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:40 Download gff for BS03810.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..966 12..700 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:06 Download gff for BS03810.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 282..962 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:48 Download gff for BS03810.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 277..966 12..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:17 Download gff for BS03810.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 282..962 17..697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:17 Download gff for BS03810.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16146423..16146574 17..168 100   Minus
3R 16145831..16146359 169..697 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:06 Download gff for BS03810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11971553..11972081 169..697 100 <- Minus
arm_3R 11972145..11972296 17..168 100   Minus

BS03810.pep Sequence

Translation from 16 to 696

> BS03810.pep
MLRKTATMGIMAAVAVKAAPEPQKPASSAADCSLVCRPSELPIYGSLRKT
EPKPERHPPQDSVLHKNLEAGVRYVREEVQSGYKAVADQAGIVGHYVETA
KAHTQSTIDMLNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGIG
AGAVASMCYPRQAEENCRVVLYEGRKIFAVAYNFIKGVKPGEDVPVVPFP
TSLEDLKYMASDLYDEAKDLIFPKKK*

BS03810.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-PC 226 CG5903-PC 1..226 1..226 1164 100 Plus
CG5903-PB 226 CG5903-PB 1..226 1..226 1164 100 Plus
CG5903-PA 226 CG5903-PA 1..226 1..226 1164 100 Plus