Clone Sequence Records
BS03811.5prime Sequence
480 bp (479 high quality bases) assembled on 2005-11-29
> BS03811.5prime
GAAGTTATCAGTCGACATGGCTGGAGTACTCTTTGAGGACATCTTCAACG
TAAAGGACATGGATCCGGAGGGCAAAAAGTTCGACCGTGTATCCCGCCTG
CACTGCGAGTCCGAGTCGTTTAAGATGGACCTCATCCTGGACATCAACTC
GTGGCTATACCCCATGGAGCTGGGCGACAAGTTCCGCCTGGTTTTGGCCA
CCACCCTGCGCGAGGATGGTTGCCCGGACAGCGGGGAGTACAATCCAATG
GAGCACGAGGGAACGCGGGCGGACAGCTTTGAGTACGTGATGTACGGCAA
GATCTACAGGATCGAGGGCGACGAAGCACACAATGAGGCCTCCCGGCTCT
CCGCCTACGTGTCATTCGGCGGCTTGCTGATGCGACTTCAGGGTGACGCC
AACAATCTTCATGGCTTCGAGGTGGACCAGCACATGTACCTGCTGATGAA
GCGGCTGGCCTTCTGAAAGCTTTCTAGACC
BS03811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11246-PA | 450 | Rpb8-RA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb8-RA | 692 | CG11246-RA | 191..641 | 17..467 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21729193..21729643 | 17..467 | 2255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:17:28 has no hits.
BS03811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:22 Download gff for
BS03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb8-PA | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:14 Download gff for
BS03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11246-PA | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:18 Download gff for
BS03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb8-RA | 184..650 | 10..480 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:36 Download gff for
BS03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb8-RA | 184..650 | 10..480 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:36 Download gff for
BS03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21729182..21729652 | 5..480 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:18 Download gff for
BS03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21722282..21722752 | 5..480 | 98 | | Plus |
BS03811.3prime Sequence
480 bp (479 high quality bases) assembled on 2005-12-01
> BS03811.3prime
ATGGTCTAGAAAGCTTTCAGAAGGCCAGCCGCTTCATCAGCAGGTACATG
TGCTGGTCCACCTCGAAGCCATGAAGATTGTTGGCGTCACCCTGAAGTCG
CATCAGCAAGCCGCCGAATGACACGTAGGCGGAGAGCCGGGAGGCCTCAT
TGTGTGCTTCGTCGCCCTCGATCCTGTAGATCTTGCCGTACATCACGTAC
TCAAAGCTGTCCGCCCGCGTTCCCTCGTGCTCCATTGGATTGTACTCCCC
GCTGTCCGGGCAACCATCCTCGCGCAGGGTGGTGGCCAAAACCAGGCGGA
ACTTGTCGCCCAGCTCCATGGGGTATAGCCACGAGTTGATGTCCAGGATG
AGGTCCATCTTAAACGACTCGGACTCGCAGTGCAGGCGGGATACACGGTC
GAACTTTTTGCCCTCCGGATCCATGTCCTTTACGTTGAAGATGTCCTCAA
AGAGTACTCCAGCCATGTCGACTGATAACT
BS03811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11246-PA | 450 | Rpb8-RA | 1..450 | 466..17 | 2250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb8-RA | 692 | CG11246-RA | 191..641 | 466..16 | 2255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21729193..21729643 | 466..16 | 2255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:34:16 has no hits.
BS03811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:21 Download gff for
BS03811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb8-PA | 1..450 | 17..466 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:13 Download gff for
BS03811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11246-PA | 1..450 | 17..466 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:10 Download gff for
BS03811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb8-RA | 184..650 | 3..473 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:46:27 Download gff for
BS03811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb8-RA | 184..650 | 3..473 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:27 Download gff for
BS03811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21729181..21729652 | 3..480 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:10 Download gff for
BS03811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21722281..21722752 | 3..480 | 97 | | Minus |
BS03811.complete Sequence
482 bp (482 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634775
> BS03811.complete
GAAGTTATCAGTCGACATGGCTGGAGTACTCTTTGAGGACATCTTCAACG
TAAAGGACATGGATCCGGAGGGCAAAAAGTTCGACCGTGTATCCCGCCTG
CACTGCGAGTCCGAGTCGTTTAAGATGGACCTCATCCTGGACATCAACTC
GTGGCTATACCCCATGGAGCTGGGCGACAAGTTCCGCCTGGTTTTGGCCA
CCACCCTGCGCGAGGATGGTTGCCCGGACAGCGGGGAGTACAATCCAATG
GAGCACGAGGGAACGCGGGCGGACAGCTTTGAGTACGTGATGTACGGCAA
GATCTACAGGATCGAGGGCGACGAAGCACACAATGAGGCCTCCCGGCTCT
CCGCCTACGTGTCATTCGGCGGCTTGCTGATGCGACTTCAGGGTGACGCC
AACAATCTTCATGGCTTCGAGGTGGACCAGCACATGTACCTGCTGATGAA
GCGGCTGGCCTTCTGAAAGCTTTCTAGACCAT
BS03811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb8-RA | 450 | CG11246-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb8-RA | 692 | CG11246-RA | 191..641 | 17..467 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21729193..21729643 | 17..467 | 2255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:32:13 has no hits.
BS03811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:49 Download gff for
BS03811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb8-RA | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:41 Download gff for
BS03811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb8-RA | 172..638 | 10..480 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:09 Download gff for
BS03811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb8-RA | 191..639 | 17..465 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:49 Download gff for
BS03811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb8-RA | 172..638 | 10..480 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:12 Download gff for
BS03811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb8-RA | 191..639 | 17..465 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:12 Download gff for
BS03811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21729193..21729641 | 17..465 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:09 Download gff for
BS03811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21722293..21722741 | 17..465 | 100 | | Plus |
BS03811.pep Sequence
Translation from 16 to 465
> BS03811.pep
MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPM
ELGDKFRLVLATTLREDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIE
GDEAHNEASRLSAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKRLAF*
BS03811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb8-PA | 149 | CG11246-PA | 1..149 | 1..149 | 790 | 100 | Plus |
