Clone BS03812 Report

Search the DGRC for BS03812

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptPdsw-RA
Protein status:BS03812.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03812.3prime Sequence

510 bp (509 high quality bases) assembled on 2005-12-01

> BS03812.3prime
ATGGTCTAGAAAGCTTTTAGTGGGCGGCCTCCTCCTTCATGCCACTGCCC
ACTGGTCCGTGGCGACGCTCCCAGATCAGACGATGCTTCTGCTTCATGTA
CGCGGTCTTGGCATTGGCATAACCTCCCAAGTCGCCATACTTGATGAACC
AGTTCTCGGTGGCCTTCTCGTACTGATCCATCAGCGGCCTGCACTTGACC
ATGTGATCGGGTGCCTCGTAGAGGGTGCAGTCCTCGAAGCGCTGGCGCAG
AATGTTGACAATCTCGTTGTCGACCATGCGATCCCGGCGGAACTGCTGAT
CGGCCTCGAAACGGCAGACGGCATCGTCCGTGTAGCACTGGTCGATCGTC
GGAACGCGGCGGAAGCGCTGGTGGTACCAATTCTGCTTCTGCTGGTTCGG
CTCCACAATGCTCTCACGGAACCAAGTTATGGGTCCATCGATGACATTCA
GCACCGACTCGGCAAAACTGGCCATCGGACTGCGCGGTTCCGGCATGTCG
ACTGATAACT

BS03812.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8844-PA 480 Pdsw-RA 1..476 496..21 2280 99.1 Minus
CG8844-PB 480 Pdsw-RB 1..476 496..21 2280 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Pdsw-RB 738 CG8844-RB 179..659 496..16 2330 99 Minus
Pdsw-RA 651 CG8844-RA 92..572 496..16 2330 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3466786..3467062 415..139 1385 100 Minus
2L 23513712 2L 3467133..3467255 138..16 540 95.9 Minus
2L 23513712 2L 3466335..3466416 496..415 410 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:36:15 has no hits.

BS03812.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:23 Download gff for BS03812.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-PA 1..480 17..496 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:15 Download gff for BS03812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8844-PB 1..480 17..496 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:27:37 Download gff for BS03812.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 86..574 12..504 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:38 Download gff for BS03812.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 86..574 12..504 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:38 Download gff for BS03812.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3466329..3466416 415..504 95 -> Minus
2L 3466787..3467062 139..414 100 -> Minus
2L 3467133..3467259 14..138 92 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:27:37 Download gff for BS03812.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3466329..3466416 415..504 95 -> Minus
arm_2L 3466787..3467062 139..414 100 -> Minus
arm_2L 3467133..3467259 14..138 92 -> Minus

BS03812.5prime Sequence

510 bp (509 high quality bases) assembled on 2005-11-29

> BS03812.5prime
GAAGTTATCAGTCGACATGCCGGAACCGCGCAGTCCGATGGCCAGTTTTG
CCGAGTCGGTGCTGAATGTCATCGATGGACCCATAACTTGGTTCCGTGAG
AGCATTGTGGAGCCGAACCAGCAGAAGCAGAATTGGTACCACCAGCGCTT
CCGCCGCGTTCCGACGATCGACCAGTGCTACACGGACGATGCCGTCTGCC
GTTTCGAGGCCGATCAGCAGTTCCGCCGGGATCGCATGGTCGACAACGAG
ATTGTCAACATTCTGCGCCAGCGCTTCGAGGACTGCACCCTCTACGAGGC
ACCCGATCACATGGTCAAGTGCAGGCCGCTGATGGATCAGTACGAGAAGG
CCACCGAGAACTGGTTCATCAAGTATGGCGACTTGGGAGGTTATGCCAAT
GCCAAGACCGCGTACATGAAGCAGAAGCATCGTCTGATCTGGGAGCGTCG
CCACGGACCAGTGGGCAGTGGCATGAAGGAGGAGGCCGCCCACTAAAAGC
TTTCTAGACC

BS03812.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8844-PA 480 Pdsw-RA 1..476 17..492 2280 99.1 Plus
CG8844-PB 480 Pdsw-RB 1..476 17..492 2280 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Pdsw-RB 738 CG8844-RB 179..659 17..497 2330 99 Plus
Pdsw-RA 651 CG8844-RA 92..572 17..497 2330 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3466786..3467062 98..374 1385 100 Plus
2L 23513712 2L 3467133..3467255 375..497 540 95.9 Plus
2L 23513712 2L 3466335..3466416 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:27:01 has no hits.

BS03812.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:24 Download gff for BS03812.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-PA 1..480 17..496 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:17 Download gff for BS03812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8844-PB 1..480 17..496 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:24 Download gff for BS03812.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 86..574 9..501 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:42 Download gff for BS03812.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 86..574 9..501 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:42 Download gff for BS03812.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3466329..3466416 9..98 95 -> Plus
2L 3466787..3467062 99..374 100 -> Plus
2L 3467133..3467259 375..499 92 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:24 Download gff for BS03812.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3466329..3466416 9..98 95 -> Plus
arm_2L 3466787..3467062 99..374 100 -> Plus
arm_2L 3467133..3467259 375..499 92 -> Plus

BS03812.complete Sequence

512 bp (512 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634776

> BS03812.complete
GAAGTTATCAGTCGACATGCCGGAACCGCGCAGTCCGATGGCCAGTTTTG
CCGAGTCGGTGCTGAATGTCATCGATGGACCCATAACTTGGTTCCGTGAG
AGCATTGTGGAGCCGAACCAGCAGAAGCAGAATTGGTACCACCAGCGCTT
CCGCCGCGTTCCGACGATCGACCAGTGCTACACGGACGATGCCGTCTGCC
GTTTCGAGGCCGATCAGCAGTTCCGCCGGGATCGCATGGTCGACAACGAG
ATTGTCAACATTCTGCGCCAGCGCTTCGAGGACTGCACCCTCTACGAGGC
ACCCGATCACATGGTCAAGTGCAGGCCGCTGATGGATCAGTACGAGAAGG
CCACCGAGAACTGGTTCATCAAGTATGGCGACTTGGGAGGTTATGCCAAT
GCCAAGACCGCGTACATGAAGCAGAAGCATCGTCTGATCTGGGAGCGTCG
CCACGGACCAGTGGGCAGTGGCATGAAGGAGGAGGCCGCCCACTAAAAGC
TTTCTAGACCAT

BS03812.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Pdsw-RB 480 CG8844-PB 1..480 17..496 2325 99 Plus
Pdsw-RA 480 CG8844-PA 1..480 17..496 2325 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Pdsw-RB 738 CG8844-RB 179..659 17..497 2330 99 Plus
Pdsw-RA 651 CG8844-RA 92..572 17..497 2330 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3466786..3467062 98..374 1385 100 Plus
2L 23513712 2L 3467133..3467255 375..497 540 95.9 Plus
2L 23513712 2L 3466335..3466416 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:58:48 has no hits.

BS03812.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:50 Download gff for BS03812.complete
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RB 1..480 17..496 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:43 Download gff for BS03812.complete
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RB 88..576 9..501 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:33 Download gff for BS03812.complete
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 92..568 17..494 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:51 Download gff for BS03812.complete
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RB 88..576 9..501 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:12 Download gff for BS03812.complete
Subject Subject Range Query Range Percent Splice Strand
Pdsw-RA 92..568 17..494 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:12 Download gff for BS03812.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3466335..3466416 17..98 100 -> Plus
2L 3466787..3467062 99..374 100 -> Plus
2L 3467133..3467251 375..494 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:33 Download gff for BS03812.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3466335..3466416 17..98 100 -> Plus
arm_2L 3466787..3467062 99..374 100 -> Plus
arm_2L 3467133..3467251 375..494 95   Plus

BS03812.pep Sequence

Translation from 16 to 495

> BS03812.pep
MPEPRSPMASFAESVLNVIDGPITWFRESIVEPNQQKQNWYHQRFRRVPT
IDQCYTDDAVCRFEADQQFRRDRMVDNEIVNILRQRFEDCTLYEAPDHMV
KCRPLMDQYEKATENWFIKYGDLGGYANAKTAYMKQKHRLIWERRHGPVG
SGMKEEAAH*

BS03812.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Pdsw-PB 159 CG8844-PB 1..159 1..159 875 100 Plus
Pdsw-PA 159 CG8844-PA 1..159 1..159 875 100 Plus