Clone Sequence Records
BS03812.3prime Sequence
510 bp (509 high quality bases) assembled on 2005-12-01
> BS03812.3prime
ATGGTCTAGAAAGCTTTTAGTGGGCGGCCTCCTCCTTCATGCCACTGCCC
ACTGGTCCGTGGCGACGCTCCCAGATCAGACGATGCTTCTGCTTCATGTA
CGCGGTCTTGGCATTGGCATAACCTCCCAAGTCGCCATACTTGATGAACC
AGTTCTCGGTGGCCTTCTCGTACTGATCCATCAGCGGCCTGCACTTGACC
ATGTGATCGGGTGCCTCGTAGAGGGTGCAGTCCTCGAAGCGCTGGCGCAG
AATGTTGACAATCTCGTTGTCGACCATGCGATCCCGGCGGAACTGCTGAT
CGGCCTCGAAACGGCAGACGGCATCGTCCGTGTAGCACTGGTCGATCGTC
GGAACGCGGCGGAAGCGCTGGTGGTACCAATTCTGCTTCTGCTGGTTCGG
CTCCACAATGCTCTCACGGAACCAAGTTATGGGTCCATCGATGACATTCA
GCACCGACTCGGCAAAACTGGCCATCGGACTGCGCGGTTCCGGCATGTCG
ACTGATAACT
BS03812.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8844-PA | 480 | Pdsw-RA | 1..476 | 496..21 | 2280 | 99.1 | Minus |
CG8844-PB | 480 | Pdsw-RB | 1..476 | 496..21 | 2280 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdsw-RB | 738 | CG8844-RB | 179..659 | 496..16 | 2330 | 99 | Minus |
Pdsw-RA | 651 | CG8844-RA | 92..572 | 496..16 | 2330 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3466786..3467062 | 415..139 | 1385 | 100 | Minus |
2L | 23513712 | 2L | 3467133..3467255 | 138..16 | 540 | 95.9 | Minus |
2L | 23513712 | 2L | 3466335..3466416 | 496..415 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:36:15 has no hits.
BS03812.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:23 Download gff for
BS03812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-PA | 1..480 | 17..496 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:15 Download gff for
BS03812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8844-PB | 1..480 | 17..496 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:27:37 Download gff for
BS03812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 86..574 | 12..504 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:38 Download gff for
BS03812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 86..574 | 12..504 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:38 Download gff for
BS03812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3466329..3466416 | 415..504 | 95 | -> | Minus |
2L | 3466787..3467062 | 139..414 | 100 | -> | Minus |
2L | 3467133..3467259 | 14..138 | 92 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:27:37 Download gff for
BS03812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3466329..3466416 | 415..504 | 95 | -> | Minus |
arm_2L | 3466787..3467062 | 139..414 | 100 | -> | Minus |
arm_2L | 3467133..3467259 | 14..138 | 92 | -> | Minus |
BS03812.5prime Sequence
510 bp (509 high quality bases) assembled on 2005-11-29
> BS03812.5prime
GAAGTTATCAGTCGACATGCCGGAACCGCGCAGTCCGATGGCCAGTTTTG
CCGAGTCGGTGCTGAATGTCATCGATGGACCCATAACTTGGTTCCGTGAG
AGCATTGTGGAGCCGAACCAGCAGAAGCAGAATTGGTACCACCAGCGCTT
CCGCCGCGTTCCGACGATCGACCAGTGCTACACGGACGATGCCGTCTGCC
GTTTCGAGGCCGATCAGCAGTTCCGCCGGGATCGCATGGTCGACAACGAG
ATTGTCAACATTCTGCGCCAGCGCTTCGAGGACTGCACCCTCTACGAGGC
ACCCGATCACATGGTCAAGTGCAGGCCGCTGATGGATCAGTACGAGAAGG
CCACCGAGAACTGGTTCATCAAGTATGGCGACTTGGGAGGTTATGCCAAT
GCCAAGACCGCGTACATGAAGCAGAAGCATCGTCTGATCTGGGAGCGTCG
CCACGGACCAGTGGGCAGTGGCATGAAGGAGGAGGCCGCCCACTAAAAGC
TTTCTAGACC
BS03812.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8844-PA | 480 | Pdsw-RA | 1..476 | 17..492 | 2280 | 99.1 | Plus |
CG8844-PB | 480 | Pdsw-RB | 1..476 | 17..492 | 2280 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdsw-RB | 738 | CG8844-RB | 179..659 | 17..497 | 2330 | 99 | Plus |
Pdsw-RA | 651 | CG8844-RA | 92..572 | 17..497 | 2330 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3466786..3467062 | 98..374 | 1385 | 100 | Plus |
2L | 23513712 | 2L | 3467133..3467255 | 375..497 | 540 | 95.9 | Plus |
2L | 23513712 | 2L | 3466335..3466416 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:27:01 has no hits.
BS03812.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:24 Download gff for
BS03812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-PA | 1..480 | 17..496 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:17 Download gff for
BS03812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8844-PB | 1..480 | 17..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:24 Download gff for
BS03812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 86..574 | 9..501 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:42 Download gff for
BS03812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 86..574 | 9..501 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:42 Download gff for
BS03812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3466329..3466416 | 9..98 | 95 | -> | Plus |
2L | 3466787..3467062 | 99..374 | 100 | -> | Plus |
2L | 3467133..3467259 | 375..499 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:24 Download gff for
BS03812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3466329..3466416 | 9..98 | 95 | -> | Plus |
arm_2L | 3466787..3467062 | 99..374 | 100 | -> | Plus |
arm_2L | 3467133..3467259 | 375..499 | 92 | -> | Plus |
BS03812.complete Sequence
512 bp (512 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634776
> BS03812.complete
GAAGTTATCAGTCGACATGCCGGAACCGCGCAGTCCGATGGCCAGTTTTG
CCGAGTCGGTGCTGAATGTCATCGATGGACCCATAACTTGGTTCCGTGAG
AGCATTGTGGAGCCGAACCAGCAGAAGCAGAATTGGTACCACCAGCGCTT
CCGCCGCGTTCCGACGATCGACCAGTGCTACACGGACGATGCCGTCTGCC
GTTTCGAGGCCGATCAGCAGTTCCGCCGGGATCGCATGGTCGACAACGAG
ATTGTCAACATTCTGCGCCAGCGCTTCGAGGACTGCACCCTCTACGAGGC
ACCCGATCACATGGTCAAGTGCAGGCCGCTGATGGATCAGTACGAGAAGG
CCACCGAGAACTGGTTCATCAAGTATGGCGACTTGGGAGGTTATGCCAAT
GCCAAGACCGCGTACATGAAGCAGAAGCATCGTCTGATCTGGGAGCGTCG
CCACGGACCAGTGGGCAGTGGCATGAAGGAGGAGGCCGCCCACTAAAAGC
TTTCTAGACCAT
BS03812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdsw-RB | 480 | CG8844-PB | 1..480 | 17..496 | 2325 | 99 | Plus |
Pdsw-RA | 480 | CG8844-PA | 1..480 | 17..496 | 2325 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdsw-RB | 738 | CG8844-RB | 179..659 | 17..497 | 2330 | 99 | Plus |
Pdsw-RA | 651 | CG8844-RA | 92..572 | 17..497 | 2330 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3466786..3467062 | 98..374 | 1385 | 100 | Plus |
2L | 23513712 | 2L | 3467133..3467255 | 375..497 | 540 | 95.9 | Plus |
2L | 23513712 | 2L | 3466335..3466416 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:58:48 has no hits.
BS03812.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:50 Download gff for
BS03812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RB | 1..480 | 17..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:43 Download gff for
BS03812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RB | 88..576 | 9..501 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:33 Download gff for
BS03812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 92..568 | 17..494 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:51 Download gff for
BS03812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RB | 88..576 | 9..501 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:12 Download gff for
BS03812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdsw-RA | 92..568 | 17..494 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:12 Download gff for
BS03812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3466335..3466416 | 17..98 | 100 | -> | Plus |
2L | 3466787..3467062 | 99..374 | 100 | -> | Plus |
2L | 3467133..3467251 | 375..494 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:33 Download gff for
BS03812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3466335..3466416 | 17..98 | 100 | -> | Plus |
arm_2L | 3466787..3467062 | 99..374 | 100 | -> | Plus |
arm_2L | 3467133..3467251 | 375..494 | 95 | | Plus |
BS03812.pep Sequence
Translation from 16 to 495
> BS03812.pep
MPEPRSPMASFAESVLNVIDGPITWFRESIVEPNQQKQNWYHQRFRRVPT
IDQCYTDDAVCRFEADQQFRRDRMVDNEIVNILRQRFEDCTLYEAPDHMV
KCRPLMDQYEKATENWFIKYGDLGGYANAKTAYMKQKHRLIWERRHGPVG
SGMKEEAAH*
BS03812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdsw-PB | 159 | CG8844-PB | 1..159 | 1..159 | 875 | 100 | Plus |
Pdsw-PA | 159 | CG8844-PA | 1..159 | 1..159 | 875 | 100 | Plus |