Clone Sequence Records
BS03813.3prime Sequence
579 bp (578 high quality bases) assembled on 2005-12-01
> BS03813.3prime
ATGGTCTAGAAAGCTTCTACTCGATCTCGATGATGGCGCCCGCCTTGGAC
AGTGCCTCCTTGAGTTTCTCGGCCTCCTCCTTGGGGATGTCCTCCTTAAC
GATGGTCGGTGCGCTCTCGACGAACTTTTTGGCCTGCACCAGGTTCATGC
CCTCGAGTAGGTTCTTCACCTCCTTGATCAGCGCCACCTTCTGCTTTTCG
TCGAACTTGACCAGCTTGACCTTGAAGGAGGTCTGTACCTTCTTGGGCGC
TGCCTCCTCCTCATCCTCGGCGGGAGCAGCACGTGCCGGCCCAGCGGCGA
ATTGTGGGGCAAATGCGGTCTCGGGCAGGTTCAGTTTCTGTTTGAGCAGG
GTGCTCAGCTCGGCCACCTCGAGGAGATTGAGCGCGGCAATGTTGTTGAC
AATCGAGTCCAGTTTGGGATTGGGTGGCTTGGCGGCTCCTTCCGGCGCGG
GAGGCACCAGTTTTTCCGCACCCGAGACTGCGGCGGCCGGAGCCGCTGCA
CTGTACATGCGATGCAGCTGCACTTGGCGCGAAATCTGGCGAAGGGCGAG
GCGTGTGATGTGCATGTCGACTGATAACT
BS03813.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5012-PA | 549 | mRpL12-RA | 1..549 | 565..17 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL12-RA | 738 | CG5012-RA | 101..649 | 565..17 | 2745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8956947..8957495 | 565..17 | 2745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:42:42 has no hits.
BS03813.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:25 Download gff for
BS03813.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5012-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:18 Download gff for
BS03813.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5012-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:55 Download gff for
BS03813.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 94..649 | 17..573 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:26 Download gff for
BS03813.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 94..649 | 17..573 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:26 Download gff for
BS03813.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8956940..8957495 | 17..573 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:55 Download gff for
BS03813.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8950040..8950595 | 17..573 | 99 | | Minus |
BS03813.5prime Sequence
579 bp (578 high quality bases) assembled on 2005-11-29
> BS03813.5prime
GAAGTTATCAGTCGACATGCACATCACACGCCTCGCCCTTCGCCAGATTT
CGCGCCAAGTGCAGCTGCATCGCATGTACAGTGCAGCGGCTCCGGCCGCC
GCAGTCTCGGGTGCGGAAAAACTGGTGCCTCCCGCGCCGGAAGGAGCCGC
CAAGCCACCCAATCCCAAACTGGACTCGATTGTCAACAACATTGCCGCGC
TCAATCTCCTCGAGGTGGCCGAGCTGAGCACCCTGCTCAAACAGAAACTG
AACCTGCCCGAGACCGCATTTGCCCCACAATTCGCCGCTGGGCCGGCACG
TGCTGCTCCCGCCGAGGATGAGGAGGAGGCAGCGCCCAAGAAGGTACAGA
CCTCCTTCAAGGTCAAGCTGGTCAAGTTCGACGAAAAGCAGAAGGTGGCG
CTGATCAAGGAGGTGAAGAACCTACTCGAGGGCATGAACCTGGTGCAGGC
CAAAAAGTTCGTCGAGAGCGCACCGACCATCGTTAAGGAGGACATCCCCA
AGGAGGAGGCCGAGAAACTCAAGGAGGCACTGTCCAAGGCGGGCGCCATC
ATCGAGATCGAGTAGAAGCTTTCTAGACC
BS03813.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5012-PA | 549 | mRpL12-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL12-RA | 738 | CG5012-RA | 101..649 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8956947..8957495 | 17..565 | 2745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:20:00 has no hits.
BS03813.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:26 Download gff for
BS03813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5012-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:20 Download gff for
BS03813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5012-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:18 Download gff for
BS03813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 94..649 | 9..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:51 Download gff for
BS03813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 94..649 | 9..565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:51 Download gff for
BS03813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8956940..8957495 | 9..565 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:18 Download gff for
BS03813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8950040..8950595 | 9..565 | 99 | | Plus |
BS03813.complete Sequence
581 bp (581 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634777
> BS03813.complete
GAAGTTATCAGTCGACATGCACATCACACGCCTCGCCCTTCGCCAGATTT
CGCGCCAAGTGCAGCTGCATCGCATGTACAGTGCAGCGGCTCCGGCCGCC
GCAGTCTCGGGTGCGGAAAAACTGGTGCCTCCCGCGCCGGAAGGAGCCGC
CAAGCCACCCAATCCCAAACTGGACTCGATTGTCAACAACATTGCCGCGC
TCAATCTCCTCGAGGTGGCCGAGCTGAGCACCCTGCTCAAACAGAAACTG
AACCTGCCCGAGACCGCATTTGCCCCACAATTCGCCGCTGGGCCGGCACG
TGCTGCTCCCGCCGAGGATGAGGAGGAGGCAGCGCCCAAGAAGGTACAGA
CCTCCTTCAAGGTCAAGCTGGTCAAGTTCGACGAAAAGCAGAAGGTGGCG
CTGATCAAGGAGGTGAAGAACCTACTCGAGGGCATGAACCTGGTGCAGGC
CAAAAAGTTCGTCGAGAGCGCACCGACCATCGTTAAGGAGGACATCCCCA
AGGAGGAGGCCGAGAAACTCAAGGAGGCACTGTCCAAGGCGGGCGCCATC
ATCGAGATCGAGTAGAAGCTTTCTAGACCAT
BS03813.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL12-RA | 549 | CG5012-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL12-RA | 738 | CG5012-RA | 101..649 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8956947..8957495 | 17..565 | 2745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:43:21 has no hits.
BS03813.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:51 Download gff for
BS03813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:44 Download gff for
BS03813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 93..648 | 9..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:26 Download gff for
BS03813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 101..649 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:52 Download gff for
BS03813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 93..648 | 9..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:19 Download gff for
BS03813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL12-RA | 101..649 | 17..565 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:19 Download gff for
BS03813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8956947..8957495 | 17..565 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:26 Download gff for
BS03813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8950047..8950595 | 17..565 | 100 | | Plus |
BS03813.pep Sequence
Translation from 16 to 564
> BS03813.pep
MHITRLALRQISRQVQLHRMYSAAAPAAAVSGAEKLVPPAPEGAAKPPNP
KLDSIVNNIAALNLLEVAELSTLLKQKLNLPETAFAPQFAAGPARAAPAE
DEEEAAPKKVQTSFKVKLVKFDEKQKVALIKEVKNLLEGMNLVQAKKFVE
SAPTIVKEDIPKEEAEKLKEALSKAGAIIEIE*
BS03813.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL12-PA | 182 | CG5012-PA | 1..182 | 1..182 | 885 | 100 | Plus |
