Clone BS03817 Report

Search the DGRC for BS03817

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG7382-RA
Protein status:BS03817.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03817.3prime Sequence

741 bp (740 high quality bases) assembled on 2005-12-01

> BS03817.3prime
ATGGTCTAGAAAGCTTCTACTTATCCCGGCTATTGGACATCAGGGCTAGG
TTGCCAAAGGAAGATCCAGCGGACGCTGGCTCGGGGGTGGGGTCAAATGC
ACGGTTGTCCTCAAGGATGATGGTGGTGCGGGGATAGTGATCCAATTGCA
CGAACAGATAACGATACTCCAGTTTACCAGAGTCACTCCTTCTGGACTCC
AGCTGCACGGTGGCCTTGTTCCTCAAGCCCTGCACATAAAACTGCATCCG
CATGTGGGGCTTTCCATTGCGCTCGTAGCTCGAGTGCGCCACATGCTGTC
TGCGACCGCGCCTGGATGTCTCGCCGAATCCCTTGATGGGCGCACCAATT
GCATCCTGTACCCGCGGATCTTCGACCACACGTCTTAACGCGTCCGCGTA
TATATTGTTCGGGCTTTCGCTGGAGAATAGCTCTCGGAATATGGCAAAGA
ACATCACGCAGGTCACCCCTAATCCGGCGATTATAATCGCCGTATAACTG
GCCGTCTTGGTGTTCTCCTTGATCTTCTCGCCAATGGGGCGCACATCCGT
CGACACCTGGGTGTTATCCTGCGATCTTTGAAGGGATCCGCCGCCATCGC
GCGACGCTTCCTGTCGCAAATGTGGACTCCAGTGCATCGCCGCCGCACAT
TTTAACCTGGCAAAGTTGGTGGGCAACAAATTTTGCCGCTGAGTGACCAA
ATTGCGCAATAAAGCTAGCCGTGACATGTCGACTGATAACT

BS03817.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-PA 711 CG7382-RA 1..711 727..17 3455 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-RA 888 CG7382-RA 85..795 727..17 3495 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5519212..5519622 188..598 1995 99 Plus
2L 23513712 2L 5518986..5519157 17..188 860 100 Plus
2L 23513712 2L 5519683..5519812 598..727 650 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:34:09 has no hits.

BS03817.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:31 Download gff for BS03817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-PA 1..711 17..727 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:27 Download gff for BS03817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-PA 1..711 17..727 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:08 Download gff for BS03817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 76..797 13..736 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:45:50 Download gff for BS03817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 76..797 13..736 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:45:50 Download gff for BS03817.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5518984..5519156 13..187 98 <- Plus
2L 5519212..5519621 188..597 99 <- Plus
2L 5519683..5519821 598..736 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:08 Download gff for BS03817.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5518984..5519156 13..187 98 <- Plus
arm_2L 5519212..5519621 188..597 99 <- Plus
arm_2L 5519683..5519821 598..736 97   Plus

BS03817.5prime Sequence

741 bp (740 high quality bases) assembled on 2005-12-01

> BS03817.5prime
GAAGTTATCAGTCGACATGTCACGGCTAGCTTTATTGCGCAATTTGGTCA
CTCAGCGGCAAAATTTGTTGCCCACCAACTTTGCCAGGTTAAAATGTGCG
GCGGCGATGCACTGGAGTCCACATTTGCGACAGGAAGCGTCGCGCGATGG
CGGCGGATCCCTTCAAAGATCGCAGGATAACACCCAGGTGTCGACGGATG
TGCGCCCCATTGGCGAGAAGATCAAGGAGAACACCAAGACGGCCAGTTAT
ACGGCGATTATAATCGCCGGATTAGGGGTGACCTGCGTGATGTTCTTTGC
CATATTCCGAGAGCTATTCTCCAGCGAAAGCCCGAACAATATATACGCGG
ACGCGTTAAGACGTGTGGTCGAAGATCCGCGGGTACAGGATGCAATTGGT
GCGCCCATCAAGGGATTCGGCGAGACATCCAGGCGCGGTCGCAGACAGCA
TGTGGCGCACTCGAGCTACGAGCGCAATGGAAAGCCCCACATGCGGATGC
AGTTTTATGTGCAGGGCTTGAGGAACAAGGCCACCGTGCAGCTGGAGTCC
AGAAGGAGTGACTCTGGTAAACTGGAGTATCGTTATCTGTTCGTGCAATT
GGATCACTATCCCCGCACCACCATCATCCTTGAGGACAACCGTGCATTTG
ACCCCACCCCCGAGCCAGCGTCCGCTGGATCTTCCTTTGGCAACCTAGCC
CTGATGTCCAATAGCCGGGATAAGTAGAAGCTTTCTAGACC

BS03817.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-PA 711 CG7382-RA 1..711 17..727 3455 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-RA 888 CG7382-RA 85..795 17..727 3495 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5519212..5519622 556..146 1995 99 Minus
2L 23513712 2L 5518986..5519157 727..556 860 100 Minus
2L 23513712 2L 5519683..5519812 146..17 650 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:42:55 has no hits.

BS03817.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:32 Download gff for BS03817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-PA 1..711 17..727 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:28 Download gff for BS03817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-PA 1..711 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:12 Download gff for BS03817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 76..797 8..731 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:36 Download gff for BS03817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 76..797 8..731 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:36 Download gff for BS03817.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5518984..5519156 557..731 98 <- Minus
2L 5519212..5519621 147..556 99 <- Minus
2L 5519683..5519821 8..146 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:12 Download gff for BS03817.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5518984..5519156 557..731 98 <- Minus
arm_2L 5519212..5519621 147..556 99 <- Minus
arm_2L 5519683..5519821 8..146 97   Minus

BS03817.complete Sequence

743 bp (743 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634779

> BS03817.complete
GAAGTTATCAGTCGACATGTCACGGCTAGCTTTATTGCGCAATTTGGTCA
CTCAGCGGCAAAATTTGTTGCCCACCAACTTTGCCAGGTTAAAATGTGCG
GCGGCGATGCACTGGAGTCCACATTTGCGACAGGAAGCGTCGCGCGATGG
CGGCGGATCCCTTCAAAGATCGCAGGATAACACCCAGGTGTCGACGGATG
TGCGCCCCATTGGCGAGAAGATCAAGGAGAACACCAAGACGGCCAGTTAT
ACGGCGATTATAATCGCCGGATTAGGGGTGACCTGCGTGATGTTCTTTGC
CATATTCCGAGAGCTATTCTCCAGCGAAAGCCCGAACAATATATACGCGG
ACGCGTTAAGACGTGTGGTCGAAGATCCGCGGGTACAGGATGCAATTGGT
GCGCCCATCAAGGGATTCGGCGAGACATCCAGGCGCGGTCGCAGACAGCA
TGTGGCGCACTCGAGCTACGAGCGCAATGGAAAGCCCCACATGCGGATGC
AGTTTTATGTGCAGGGCTTGAGGAACAAGGCCACCGTGCAGCTGGAGTCC
AGAAGGAGTGACTCTGGTAAACTGGAGTATCGTTATCTGTTCGTGCAATT
GGATCACTATCCCCGCACCACCATCATCCTTGAGGACAACCGTGCATTTG
ACCCCACCCCCGAGCCAGCGTCCGCTGGATCTTCCTTTGGCAACCTAGCC
CTGATGTCCAATAGCCGGGATAAGTAGAAGCTTTCTAGACCAT

BS03817.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-RA 711 CG7382-PA 1..711 17..727 3495 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-RA 888 CG7382-RA 85..795 17..727 3495 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5519212..5519622 556..146 1995 99 Minus
2L 23513712 2L 5518986..5519157 727..556 860 100 Minus
2L 23513712 2L 5519683..5519812 146..17 650 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:33:30 has no hits.

BS03817.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:54 Download gff for BS03817.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 1..711 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:48 Download gff for BS03817.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 69..790 8..731 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:13 Download gff for BS03817.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 85..795 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:54 Download gff for BS03817.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 69..790 8..731 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:54 Download gff for BS03817.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 85..795 17..727 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:54 Download gff for BS03817.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5518986..5519156 557..727 100 <- Minus
2L 5519212..5519621 147..556 99 <- Minus
2L 5519683..5519812 17..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:13 Download gff for BS03817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5518986..5519156 557..727 100 <- Minus
arm_2L 5519212..5519621 147..556 99 <- Minus
arm_2L 5519683..5519812 17..146 100   Minus

BS03817.pep Sequence

Translation from 16 to 726

> BS03817.pep
MSRLALLRNLVTQRQNLLPTNFARLKCAAAMHWSPHLRQEASRDGGGSLQ
RSQDNTQVSTDVRPIGEKIKENTKTASYTAIIIAGLGVTCVMFFAIFREL
FSSESPNNIYADALRRVVEDPRVQDAIGAPIKGFGETSRRGRRQHVAHSS
YERNGKPHMRMQFYVQGLRNKATVQLESRRSDSGKLEYRYLFVQLDHYPR
TTIILEDNRAFDPTPEPASAGSSFGNLALMSNSRDK*

BS03817.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-PA 236 CG7382-PA 1..236 1..236 1212 100 Plus