Clone Sequence Records
BS03817.3prime Sequence
741 bp (740 high quality bases) assembled on 2005-12-01
> BS03817.3prime
ATGGTCTAGAAAGCTTCTACTTATCCCGGCTATTGGACATCAGGGCTAGG
TTGCCAAAGGAAGATCCAGCGGACGCTGGCTCGGGGGTGGGGTCAAATGC
ACGGTTGTCCTCAAGGATGATGGTGGTGCGGGGATAGTGATCCAATTGCA
CGAACAGATAACGATACTCCAGTTTACCAGAGTCACTCCTTCTGGACTCC
AGCTGCACGGTGGCCTTGTTCCTCAAGCCCTGCACATAAAACTGCATCCG
CATGTGGGGCTTTCCATTGCGCTCGTAGCTCGAGTGCGCCACATGCTGTC
TGCGACCGCGCCTGGATGTCTCGCCGAATCCCTTGATGGGCGCACCAATT
GCATCCTGTACCCGCGGATCTTCGACCACACGTCTTAACGCGTCCGCGTA
TATATTGTTCGGGCTTTCGCTGGAGAATAGCTCTCGGAATATGGCAAAGA
ACATCACGCAGGTCACCCCTAATCCGGCGATTATAATCGCCGTATAACTG
GCCGTCTTGGTGTTCTCCTTGATCTTCTCGCCAATGGGGCGCACATCCGT
CGACACCTGGGTGTTATCCTGCGATCTTTGAAGGGATCCGCCGCCATCGC
GCGACGCTTCCTGTCGCAAATGTGGACTCCAGTGCATCGCCGCCGCACAT
TTTAACCTGGCAAAGTTGGTGGGCAACAAATTTTGCCGCTGAGTGACCAA
ATTGCGCAATAAAGCTAGCCGTGACATGTCGACTGATAACT
BS03817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-PA | 711 | CG7382-RA | 1..711 | 727..17 | 3455 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-RA | 888 | CG7382-RA | 85..795 | 727..17 | 3495 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5519212..5519622 | 188..598 | 1995 | 99 | Plus |
2L | 23513712 | 2L | 5518986..5519157 | 17..188 | 860 | 100 | Plus |
2L | 23513712 | 2L | 5519683..5519812 | 598..727 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:34:09 has no hits.
BS03817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:31 Download gff for
BS03817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-PA | 1..711 | 17..727 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:27 Download gff for
BS03817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-PA | 1..711 | 17..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:08 Download gff for
BS03817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 76..797 | 13..736 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:45:50 Download gff for
BS03817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 76..797 | 13..736 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:45:50 Download gff for
BS03817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5518984..5519156 | 13..187 | 98 | <- | Plus |
2L | 5519212..5519621 | 188..597 | 99 | <- | Plus |
2L | 5519683..5519821 | 598..736 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:08 Download gff for
BS03817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5518984..5519156 | 13..187 | 98 | <- | Plus |
arm_2L | 5519212..5519621 | 188..597 | 99 | <- | Plus |
arm_2L | 5519683..5519821 | 598..736 | 97 | | Plus |
BS03817.5prime Sequence
741 bp (740 high quality bases) assembled on 2005-12-01
> BS03817.5prime
GAAGTTATCAGTCGACATGTCACGGCTAGCTTTATTGCGCAATTTGGTCA
CTCAGCGGCAAAATTTGTTGCCCACCAACTTTGCCAGGTTAAAATGTGCG
GCGGCGATGCACTGGAGTCCACATTTGCGACAGGAAGCGTCGCGCGATGG
CGGCGGATCCCTTCAAAGATCGCAGGATAACACCCAGGTGTCGACGGATG
TGCGCCCCATTGGCGAGAAGATCAAGGAGAACACCAAGACGGCCAGTTAT
ACGGCGATTATAATCGCCGGATTAGGGGTGACCTGCGTGATGTTCTTTGC
CATATTCCGAGAGCTATTCTCCAGCGAAAGCCCGAACAATATATACGCGG
ACGCGTTAAGACGTGTGGTCGAAGATCCGCGGGTACAGGATGCAATTGGT
GCGCCCATCAAGGGATTCGGCGAGACATCCAGGCGCGGTCGCAGACAGCA
TGTGGCGCACTCGAGCTACGAGCGCAATGGAAAGCCCCACATGCGGATGC
AGTTTTATGTGCAGGGCTTGAGGAACAAGGCCACCGTGCAGCTGGAGTCC
AGAAGGAGTGACTCTGGTAAACTGGAGTATCGTTATCTGTTCGTGCAATT
GGATCACTATCCCCGCACCACCATCATCCTTGAGGACAACCGTGCATTTG
ACCCCACCCCCGAGCCAGCGTCCGCTGGATCTTCCTTTGGCAACCTAGCC
CTGATGTCCAATAGCCGGGATAAGTAGAAGCTTTCTAGACC
BS03817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-PA | 711 | CG7382-RA | 1..711 | 17..727 | 3455 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-RA | 888 | CG7382-RA | 85..795 | 17..727 | 3495 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5519212..5519622 | 556..146 | 1995 | 99 | Minus |
2L | 23513712 | 2L | 5518986..5519157 | 727..556 | 860 | 100 | Minus |
2L | 23513712 | 2L | 5519683..5519812 | 146..17 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:42:55 has no hits.
BS03817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:32 Download gff for
BS03817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-PA | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:28 Download gff for
BS03817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-PA | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:12 Download gff for
BS03817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 76..797 | 8..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:36 Download gff for
BS03817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 76..797 | 8..731 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:36 Download gff for
BS03817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5518984..5519156 | 557..731 | 98 | <- | Minus |
2L | 5519212..5519621 | 147..556 | 99 | <- | Minus |
2L | 5519683..5519821 | 8..146 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:12 Download gff for
BS03817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5518984..5519156 | 557..731 | 98 | <- | Minus |
arm_2L | 5519212..5519621 | 147..556 | 99 | <- | Minus |
arm_2L | 5519683..5519821 | 8..146 | 97 | | Minus |
BS03817.complete Sequence
743 bp (743 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634779
> BS03817.complete
GAAGTTATCAGTCGACATGTCACGGCTAGCTTTATTGCGCAATTTGGTCA
CTCAGCGGCAAAATTTGTTGCCCACCAACTTTGCCAGGTTAAAATGTGCG
GCGGCGATGCACTGGAGTCCACATTTGCGACAGGAAGCGTCGCGCGATGG
CGGCGGATCCCTTCAAAGATCGCAGGATAACACCCAGGTGTCGACGGATG
TGCGCCCCATTGGCGAGAAGATCAAGGAGAACACCAAGACGGCCAGTTAT
ACGGCGATTATAATCGCCGGATTAGGGGTGACCTGCGTGATGTTCTTTGC
CATATTCCGAGAGCTATTCTCCAGCGAAAGCCCGAACAATATATACGCGG
ACGCGTTAAGACGTGTGGTCGAAGATCCGCGGGTACAGGATGCAATTGGT
GCGCCCATCAAGGGATTCGGCGAGACATCCAGGCGCGGTCGCAGACAGCA
TGTGGCGCACTCGAGCTACGAGCGCAATGGAAAGCCCCACATGCGGATGC
AGTTTTATGTGCAGGGCTTGAGGAACAAGGCCACCGTGCAGCTGGAGTCC
AGAAGGAGTGACTCTGGTAAACTGGAGTATCGTTATCTGTTCGTGCAATT
GGATCACTATCCCCGCACCACCATCATCCTTGAGGACAACCGTGCATTTG
ACCCCACCCCCGAGCCAGCGTCCGCTGGATCTTCCTTTGGCAACCTAGCC
CTGATGTCCAATAGCCGGGATAAGTAGAAGCTTTCTAGACCAT
BS03817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-RA | 711 | CG7382-PA | 1..711 | 17..727 | 3495 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-RA | 888 | CG7382-RA | 85..795 | 17..727 | 3495 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5519212..5519622 | 556..146 | 1995 | 99 | Minus |
2L | 23513712 | 2L | 5518986..5519157 | 727..556 | 860 | 100 | Minus |
2L | 23513712 | 2L | 5519683..5519812 | 146..17 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:33:30 has no hits.
BS03817.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:54 Download gff for
BS03817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:48 Download gff for
BS03817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 69..790 | 8..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:13 Download gff for
BS03817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 85..795 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:54 Download gff for
BS03817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 69..790 | 8..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:54 Download gff for
BS03817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7382-RA | 85..795 | 17..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:54 Download gff for
BS03817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5518986..5519156 | 557..727 | 100 | <- | Minus |
2L | 5519212..5519621 | 147..556 | 99 | <- | Minus |
2L | 5519683..5519812 | 17..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:13 Download gff for
BS03817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5518986..5519156 | 557..727 | 100 | <- | Minus |
arm_2L | 5519212..5519621 | 147..556 | 99 | <- | Minus |
arm_2L | 5519683..5519812 | 17..146 | 100 | | Minus |
BS03817.pep Sequence
Translation from 16 to 726
> BS03817.pep
MSRLALLRNLVTQRQNLLPTNFARLKCAAAMHWSPHLRQEASRDGGGSLQ
RSQDNTQVSTDVRPIGEKIKENTKTASYTAIIIAGLGVTCVMFFAIFREL
FSSESPNNIYADALRRVVEDPRVQDAIGAPIKGFGETSRRGRRQHVAHSS
YERNGKPHMRMQFYVQGLRNKATVQLESRRSDSGKLEYRYLFVQLDHYPR
TTIILEDNRAFDPTPEPASAGSSFGNLALMSNSRDK*
BS03817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7382-PA | 236 | CG7382-PA | 1..236 | 1..236 | 1212 | 100 | Plus |