Clone Sequence Records
BS03819.5prime Sequence
696 bp (695 high quality bases) assembled on 2005-11-29
> BS03819.5prime
GAAGTTATCAGTCGACATGGCCTCCATTGACGAGGGCTCGCGCGTTGAGC
GGAGATTCTGCGCAGTCGGCAACCACACGCTGCGGAAGCCGTATCGCCAA
CTGAACAACAAATATTTGGTGCGCTTCGCCTGTTTGCTGAACAGCGAAAT
TCGGGCGGGCAACCTCATCTGCTGCAAGTGCTACACGGACCTGGTGCGAC
TCTACCGGAAGAAGAACGACAATGCCAAACGGCACAAGATGGCCAGGGAG
ACTGCCGCGAGCATTACGGACGTCAGCGGCAGTCAGTCATCGTCGCACCA
AAGTGCGCCCTCTTTGCATGTCTCTGGCCAAAGTTCCGAATTCGGTGCCT
CATACAGTGAGGGGGGCATTGTGACTCCCGATGAAGAGCTGTGCTCCCAC
AGAAGCTTAAGTCAAGATTCAGACAATGTGCCTACTACCAGCGCTGCAGC
GATCCAAAAACGCCAGCTTGCGAGGGCAAACCTAATGGTGAAACCATCGC
AGAGGCTGAGCTTGGCCCAGACTACTCCGGATTGTGACGACTACGACCCC
AACTCGAATCTCAGTTTGAACGCCGTGAATGGCACGCGACTGCCGCACAT
TCAGCCGATTCCAAAGAGGCGCCCGACCGTCCTGGACAAGCAGTCCATGG
ATATTTACTTGATGGGAACCACAGGTGGTTAGAAGCTTTCTAGACC
BS03819.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6874-PA | 666 | l(3)neo26-RA | 1..666 | 17..682 | 3280 | 99.6 | Plus |
| CG6874-PB | 666 | l(3)neo26-RB | 1..666 | 17..682 | 3280 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HipHop-RB | 1183 | CG6874-RB | 137..802 | 17..682 | 3300 | 99.7 | Plus |
| HipHop-RA | 1124 | CG6874-RA | 78..743 | 17..682 | 3300 | 99.7 | Plus |
| ms(3)K81-RA | 711 | CG14251-RA | 513..597 | 539..623 | 200 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18821307..18821972 | 17..682 | 3300 | 99.7 | Plus |
| 3R | 32079331 | 3R | 26876364..26876448 | 539..623 | 200 | 82.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:14:51 has no hits.
BS03819.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:34 Download gff for
BS03819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6874-PA | 1..666 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:31 Download gff for
BS03819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6874-PB | 1..666 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:46 Download gff for
BS03819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 74..750 | 9..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:30 Download gff for
BS03819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 74..750 | 9..689 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:30 Download gff for
BS03819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18821296..18821979 | 7..689 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:46 Download gff for
BS03819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18814396..18815079 | 7..689 | 98 | | Plus |
BS03819.3prime Sequence
696 bp (695 high quality bases) assembled on 2005-12-01
> BS03819.3prime
ATGGTCTAGAAAGCTTCTAACCACCTGTGGTTCCCATCAAGTAAATATCC
ATGGACTGCTTGTCCAGGACGGTCGGGCGCCTCTTTGGAATCGGCTGAAT
GTGCGGCAGTCGCGTGCCATTCACGGCGTTCAAACTGAGATTCGAGTTGG
GGTCGTAGTCGTCACAATCCGGAGTAGTCTGGGCCAAGCTCAGCCTCTGC
GATGGTTTCACCATTAGGTTTGCCCTCGCAAGCTGGCGTTTTTGGATCGC
TGCAGCGCTGGTAGTAGGCACATTGTCTGAATCTTGACTTAAGCTTCTGT
GGGAGCACAGCTCTTCATCGGGAGTCACAATGCCCCCCTCACTGTATGAG
GCACCGAATTCGGAACTTTGGCCAGAGACATGCAAAGAGGGCGCACTTTG
GTGCGACGATGACTGACTGCCGCTGACGTCCGTAATGCTCGCGGCAGTCT
CCCTGGCCATCTTGTGCCGTTTGGCATTGTCGTTCTTCTTCCGGTAGAGT
CGCACCAGGTCCGTGTAGCACTTGCAGCAGATGAGGTTGCCCGCCCGAAT
TTCGCTGTTCAGCAAACAGGCGAAGCGCACCAAATATTTGTTGTTCAGTT
GGCGATACGGCTTCCGCAGCGTGTGGTTGCCGACTGCGCAGAATCTCCGC
TCAACGCGCGAGCCCTCGTCAATGGAGGCCATGTCGACTGATAACT
BS03819.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6874-PA | 666 | l(3)neo26-RA | 1..666 | 682..17 | 3280 | 99.6 | Minus |
| CG6874-PB | 666 | l(3)neo26-RB | 1..666 | 682..17 | 3280 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HipHop-RB | 1183 | CG6874-RB | 137..802 | 682..17 | 3300 | 99.7 | Minus |
| HipHop-RA | 1124 | CG6874-RA | 78..743 | 682..17 | 3300 | 99.7 | Minus |
| ms(3)K81-RA | 711 | CG14251-RA | 513..597 | 160..76 | 200 | 82.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18821307..18821972 | 682..17 | 3300 | 99.7 | Minus |
| 3R | 32079331 | 3R | 26876364..26876448 | 160..76 | 200 | 82.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:17:56 has no hits.
BS03819.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:33 Download gff for
BS03819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6874-PA | 1..666 | 17..682 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:30 Download gff for
BS03819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6874-PB | 1..666 | 17..682 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:45:36 Download gff for
BS03819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 74..750 | 10..690 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:54:32 Download gff for
BS03819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 74..750 | 10..690 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:54:32 Download gff for
BS03819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18821296..18821979 | 10..692 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:45:36 Download gff for
BS03819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18814396..18815079 | 10..692 | 98 | | Minus |
BS03819.complete Sequence
698 bp (698 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634780
> BS03819.complete
GAAGTTATCAGTCGACATGGCCTCCATTGACGAGGGCTCGCGCGTTGAGC
GGAGATTCTGCGCAGTCGGCAACCACACGCTGCGGAAGCCGTATCGCCAA
CTGAACAACAAATATTTGGTGCGCTTCGCCTGTTTGCTGAACAGCGAAAT
TCGGGCGGGCAACCTCATCTGCTGCAAGTGCTACACGGACCTGGTGCGAC
TCTACCGGAAGAAGAACGACAATGCCAAACGGCACAAGATGGCCAGGGAG
ACTGCCGCGAGCATTACGGACGTCAGCGGCAGTCAGTCATCGTCGCACCA
AAGTGCGCCCTCTTTGCATGTCTCTGGCCAAAGTTCCGAATTCGGTGCCT
CATACAGTGAGGGGGGCATTGTGACTCCCGATGAAGAGCTGTGCTCCCAC
AGAAGCTTAAGTCAAGATTCAGACAATGTGCCTACTACCAGCGCTGCAGC
GATCCAAAAACGCCAGCTTGCGAGGGCAAACCTAATGGTGAAACCATCGC
AGAGGCTGAGCTTGGCCCAGACTACTCCGGATTGTGACGACTACGACCCC
AACTCGAATCTCAGTTTGAACGCCGTGAATGGCACGCGACTGCCGCACAT
TCAGCCGATTCCAAAGAGGCGCCCGACCGTCCTGGACAAGCAGTCCATGG
ATATTTACTTGATGGGAACCACAGGTGGTTAGAAGCTTTCTAGACCAT
BS03819.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HipHop-RB | 666 | CG6874-PB | 1..666 | 17..682 | 3300 | 99.7 | Plus |
| HipHop-RA | 666 | CG6874-PA | 1..666 | 17..682 | 3300 | 99.7 | Plus |
| ms(3)K81-RA | 555 | CG14251-PA | 409..493 | 539..623 | 200 | 82.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HipHop-RB | 1183 | CG6874-RB | 137..802 | 17..682 | 3300 | 99.7 | Plus |
| HipHop-RA | 1124 | CG6874-RA | 78..743 | 17..682 | 3300 | 99.7 | Plus |
| ms(3)K81-RA | 711 | CG14251-RA | 513..597 | 539..623 | 200 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18821307..18821972 | 17..682 | 3300 | 99.7 | Plus |
| 3R | 32079331 | 3R | 26876364..26876448 | 539..623 | 200 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:16:19 has no hits.
BS03819.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:36 Download gff for
BS03819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo26-RB | 1..666 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:25 Download gff for
BS03819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo26-RB | 32..715 | 7..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:16 Download gff for
BS03819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 78..743 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:37 Download gff for
BS03819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo26-RB | 32..715 | 7..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:57 Download gff for
BS03819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 78..743 | 17..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:57 Download gff for
BS03819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18821307..18821972 | 17..682 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:16 Download gff for
BS03819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18814407..18815072 | 17..682 | 99 | | Plus |
BS03819.pep Sequence
Translation from 16 to 681
> BS03819.pep
MASIDEGSRVERRFCAVGNHTLRKPYRQLNNKYLVRFACLLNSEIRAGNL
ICCKCYTDLVRLYRKKNDNAKRHKMARETAASITDVSGSQSSSHQSAPSL
HVSGQSSEFGASYSEGGIVTPDEELCSHRSLSQDSDNVPTTSAAAIQKRQ
LARANLMVKPSQRLSLAQTTPDCDDYDPNSNLSLNAVNGTRLPHIQPIPK
RRPTVLDKQSMDIYLMGTTGG*
BS03819.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HipHop-PB | 221 | CG6874-PB | 1..221 | 1..221 | 1145 | 100 | Plus |
| HipHop-PA | 221 | CG6874-PA | 1..221 | 1..221 | 1145 | 100 | Plus |
| ms(3)K81-PA | 184 | CG14251-PA | 8..184 | 11..221 | 396 | 45.8 | Plus |
