Clone BS03822 Report

Search the DGRC for BS03822

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG5919-RA
Protein status:BS03822.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03822.3prime Sequence

801 bp (800 high quality bases) assembled on 2005-12-01

> BS03822.3prime
ATGGTCTAGAAAGCTTTTAAAAGCGCTGAATATTACTCAAGTCCTCAAAT
TGCTCCAGCTGGTGCAAATTGTCCCACCAGAGTTTCAATCGATGCTGCAG
AATCAGAGAGAACCAGGGTGTCAGCGGGGCACTAAACTTCGCCACCGCCT
CGTCGATCTTATCGCGGCGCAAGTAGCGCACCTCACTGACCTCGTTGCTA
TTTGGACGCAGCGTCACGTCTTTTTGCAGGAACAGGATGTAGTCTATCTC
GTGCTCGCCCCACACGCCGTCGCCCGTGTCTGCGTAGTGGATGCGGGTCA
GGTAGCGAAAGTCCTGTGGCTGCAGTTCCTCTGTGGGAATGCCCAGTTCG
TAGTTGAGACGTCGTTGAGCGGCCACACGGATGCCCTGTGCGTTGCGCTC
CTGACGTTCCTGTTCGATTTCGTAAAGCGGATGGCTGCAGCACGCGTTGG
TGTAGGTGTTTGGGAAGGTTATCTTGTGAGACGATCGCTTCTGCACTAGC
ATCTCTCCCTGAGAATTGAAGAGAAAAACACTGAAGGCGCGATGGAGCTT
AACATCATTCGTCTCTGGATGCACACGGTGGCAGTCTGCCTTAGAGGCGG
CCCCAATGGCTTGGTCGTTGGCGTCAACCAGGATGCACTGTTCCTTTAGA
GCGTGAGCCTGCAGAGGATCGTGTACGGCGAACTCCGTGGGCACCTGGCG
CTGATGTTTCTGGCCCACCGCTGTCGTTGAGCAACCGCGCAGCCAGGATA
CGCGGGGCAACAGGAGATTCAAGCGAGAGGCCAACATGTCGACTGATAAC
T

BS03822.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-PA 771 CG5919-RA 1..771 787..17 3855 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-RB 898 CG5919-RB 91..861 787..17 3855 100 Minus
CG5919-RA 1227 CG5919-RA 91..861 787..17 3855 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21270585..21271042 474..17 2290 100 Minus
3R 32079331 3R 21270216..21270530 787..473 1575 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:51:53 has no hits.

BS03822.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:35 Download gff for BS03822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-PA 1..771 17..787 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:33 Download gff for BS03822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-PA 1..771 17..787 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:18 Download gff for BS03822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 91..861 17..787 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:25:17 Download gff for BS03822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 91..861 17..787 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:25:17 Download gff for BS03822.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21270216..21270530 473..787 100 -> Minus
3R 21270587..21271042 17..472 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:18 Download gff for BS03822.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095938..17096252 473..787 100 -> Minus
arm_3R 17096309..17096764 17..472 100   Minus

BS03822.5prime Sequence

801 bp (800 high quality bases) assembled on 2005-11-29

> BS03822.5prime
GAAGTTATCAGTCGACATGTTGGCCTCTCGCTTGAATCTCCTGTTGCCCC
GCGTATCCTGGCTGCGCGGTTGCTCAACGACAGCGGTGGGCCAGAAACAT
CAGCGCCAGGTGCCCACGGAGTTCGCCGTACACGATCCTCTGCAGGCTCA
CGCTCTAAAGGAACAGTGCATCCTGGTTGACGCCAACGACCAAGCCATTG
GGGCCGCCTCTAAGGCAGACTGCCACCGTGTGCATCCAGAGACGAATGAT
GTTAAGCTCCATCGCGCCTTCAGTGTTTTTCTCTTCAATTCTCAGGGAGA
GATGCTAGTGCAGAAGCGATCGTCTCACAAGATAACCTTCCCAAACACCT
ACACCAACGCGTGCTGCAGCCATCCGCTTTACGAAATCGAACAGGAACGT
CAGGAGCGCAACGCACAGGGCATCCGTGTGGCCGCTCAACGACGTCTCAA
CTACGAACTGGGCATTCCCACAGAGGAACTGCAGCCACAGGACTTTCGCT
ACCTGACCCGCATCCACTACGCAGACACGGGCGACGGCGTGTGGGGCGAG
CACGAGATAGACTACATCCTGTTCCTGCAAAAAGACGTGACGCTGCGTCC
AAATAGCAACGAGGTCAGTGAGGTGCGCTACTTGCGCCGCGATAAGATCG
ACGAGGCGGTGGCGAAGTTTAGTGCCCCGCTGACACCCTGGTTCTCTCTG
ATTCTGCAGCATCGATTGAAACTCTGGTGGGACAATTTGCACCAGCTGGA
GCAATTTGAGGACTTGAGTAATATTCAGCGCTTTTAAAAGCTTTCTAGAC
C

BS03822.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-PA 771 CG5919-RA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-RB 898 CG5919-RB 91..861 17..787 3855 100 Plus
CG5919-RA 1227 CG5919-RA 91..861 17..787 3855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21270585..21271042 330..787 2290 100 Plus
3R 32079331 3R 21270216..21270530 17..331 1575 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:46:19 has no hits.

BS03822.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:37 Download gff for BS03822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:34 Download gff for BS03822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:15 Download gff for BS03822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 91..861 17..787 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:20:30 Download gff for BS03822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 91..861 17..787 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:30 Download gff for BS03822.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21270216..21270530 17..331 100 -> Plus
3R 21270587..21271042 332..787 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:15 Download gff for BS03822.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095938..17096252 17..331 100 -> Plus
arm_3R 17096309..17096764 332..787 100   Plus

BS03822.complete Sequence

803 bp (803 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634781

> BS03822.complete
GAAGTTATCAGTCGACATGTTGGCCTCTCGCTTGAATCTCCTGTTGCCCC
GCGTATCCTGGCTGCGCGGTTGCTCAACGACAGCGGTGGGCCAGAAACAT
CAGCGCCAGGTGCCCACGGAGTTCGCCGTACACGATCCTCTGCAGGCTCA
CGCTCTAAAGGAACAGTGCATCCTGGTTGACGCCAACGACCAAGCCATTG
GGGCCGCCTCTAAGGCAGACTGCCACCGTGTGCATCCAGAGACGAATGAT
GTTAAGCTCCATCGCGCCTTCAGTGTTTTTCTCTTCAATTCTCAGGGAGA
GATGCTAGTGCAGAAGCGATCGTCTCACAAGATAACCTTCCCAAACACCT
ACACCAACGCGTGCTGCAGCCATCCGCTTTACGAAATCGAACAGGAACGT
CAGGAGCGCAACGCACAGGGCATCCGTGTGGCCGCTCAACGACGTCTCAA
CTACGAACTGGGCATTCCCACAGAGGAACTGCAGCCACAGGACTTTCGCT
ACCTGACCCGCATCCACTACGCAGACACGGGCGACGGCGTGTGGGGCGAG
CACGAGATAGACTACATCCTGTTCCTGCAAAAAGACGTGACGCTGCGTCC
AAATAGCAACGAGGTCAGTGAGGTGCGCTACTTGCGCCGCGATAAGATCG
ACGAGGCGGTGGCGAAGTTTAGTGCCCCGCTGACACCCTGGTTCTCTCTG
ATTCTGCAGCATCGATTGAAACTCTGGTGGGACAATTTGCACCAGCTGGA
GCAATTTGAGGACTTGAGTAATATTCAGCGCTTTTAAAAGCTTTCTAGAC
CAT

BS03822.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-RB 771 CG5919-PB 1..771 17..787 3855 100 Plus
CG5919-RA 771 CG5919-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-RB 898 CG5919-RB 91..861 17..787 3855 100 Plus
CG5919-RA 1227 CG5919-RA 91..861 17..787 3855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21270585..21271042 330..787 2290 100 Plus
3R 32079331 3R 21270216..21270530 17..331 1575 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:46:51 has no hits.

BS03822.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:38 Download gff for BS03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:26 Download gff for BS03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 80..850 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:27 Download gff for BS03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 96..859 22..785 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:38 Download gff for BS03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 80..850 17..787 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:03 Download gff for BS03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG5919-RA 96..859 22..785 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:03 Download gff for BS03822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21270221..21270530 22..331 100 -> Plus
3R 21270587..21271040 332..785 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:27 Download gff for BS03822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095943..17096252 22..331 100 -> Plus
arm_3R 17096309..17096762 332..785 100   Plus

BS03822.pep Sequence

Translation from 16 to 786

> BS03822.pep
MLASRLNLLLPRVSWLRGCSTTAVGQKHQRQVPTEFAVHDPLQAHALKEQ
CILVDANDQAIGAASKADCHRVHPETNDVKLHRAFSVFLFNSQGEMLVQK
RSSHKITFPNTYTNACCSHPLYEIEQERQERNAQGIRVAAQRRLNYELGI
PTEELQPQDFRYLTRIHYADTGDGVWGEHEIDYILFLQKDVTLRPNSNEV
SEVRYLRRDKIDEAVAKFSAPLTPWFSLILQHRLKLWWDNLHQLEQFEDL
SNIQRF*

BS03822.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5919-PB 256 CG5919-PB 1..256 1..256 1359 100 Plus
CG5919-PA 256 CG5919-PA 1..256 1..256 1359 100 Plus