Clone Sequence Records
BS03822.3prime Sequence
801 bp (800 high quality bases) assembled on 2005-12-01
> BS03822.3prime
ATGGTCTAGAAAGCTTTTAAAAGCGCTGAATATTACTCAAGTCCTCAAAT
TGCTCCAGCTGGTGCAAATTGTCCCACCAGAGTTTCAATCGATGCTGCAG
AATCAGAGAGAACCAGGGTGTCAGCGGGGCACTAAACTTCGCCACCGCCT
CGTCGATCTTATCGCGGCGCAAGTAGCGCACCTCACTGACCTCGTTGCTA
TTTGGACGCAGCGTCACGTCTTTTTGCAGGAACAGGATGTAGTCTATCTC
GTGCTCGCCCCACACGCCGTCGCCCGTGTCTGCGTAGTGGATGCGGGTCA
GGTAGCGAAAGTCCTGTGGCTGCAGTTCCTCTGTGGGAATGCCCAGTTCG
TAGTTGAGACGTCGTTGAGCGGCCACACGGATGCCCTGTGCGTTGCGCTC
CTGACGTTCCTGTTCGATTTCGTAAAGCGGATGGCTGCAGCACGCGTTGG
TGTAGGTGTTTGGGAAGGTTATCTTGTGAGACGATCGCTTCTGCACTAGC
ATCTCTCCCTGAGAATTGAAGAGAAAAACACTGAAGGCGCGATGGAGCTT
AACATCATTCGTCTCTGGATGCACACGGTGGCAGTCTGCCTTAGAGGCGG
CCCCAATGGCTTGGTCGTTGGCGTCAACCAGGATGCACTGTTCCTTTAGA
GCGTGAGCCTGCAGAGGATCGTGTACGGCGAACTCCGTGGGCACCTGGCG
CTGATGTTTCTGGCCCACCGCTGTCGTTGAGCAACCGCGCAGCCAGGATA
CGCGGGGCAACAGGAGATTCAAGCGAGAGGCCAACATGTCGACTGATAAC
T
BS03822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-PA | 771 | CG5919-RA | 1..771 | 787..17 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-RB | 898 | CG5919-RB | 91..861 | 787..17 | 3855 | 100 | Minus |
CG5919-RA | 1227 | CG5919-RA | 91..861 | 787..17 | 3855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21270585..21271042 | 474..17 | 2290 | 100 | Minus |
3R | 32079331 | 3R | 21270216..21270530 | 787..473 | 1575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:51:53 has no hits.
BS03822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:35 Download gff for
BS03822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-PA | 1..771 | 17..787 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:33 Download gff for
BS03822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-PA | 1..771 | 17..787 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:18 Download gff for
BS03822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 91..861 | 17..787 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:25:17 Download gff for
BS03822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 91..861 | 17..787 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:25:17 Download gff for
BS03822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21270216..21270530 | 473..787 | 100 | -> | Minus |
3R | 21270587..21271042 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:18 Download gff for
BS03822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095938..17096252 | 473..787 | 100 | -> | Minus |
arm_3R | 17096309..17096764 | 17..472 | 100 | | Minus |
BS03822.5prime Sequence
801 bp (800 high quality bases) assembled on 2005-11-29
> BS03822.5prime
GAAGTTATCAGTCGACATGTTGGCCTCTCGCTTGAATCTCCTGTTGCCCC
GCGTATCCTGGCTGCGCGGTTGCTCAACGACAGCGGTGGGCCAGAAACAT
CAGCGCCAGGTGCCCACGGAGTTCGCCGTACACGATCCTCTGCAGGCTCA
CGCTCTAAAGGAACAGTGCATCCTGGTTGACGCCAACGACCAAGCCATTG
GGGCCGCCTCTAAGGCAGACTGCCACCGTGTGCATCCAGAGACGAATGAT
GTTAAGCTCCATCGCGCCTTCAGTGTTTTTCTCTTCAATTCTCAGGGAGA
GATGCTAGTGCAGAAGCGATCGTCTCACAAGATAACCTTCCCAAACACCT
ACACCAACGCGTGCTGCAGCCATCCGCTTTACGAAATCGAACAGGAACGT
CAGGAGCGCAACGCACAGGGCATCCGTGTGGCCGCTCAACGACGTCTCAA
CTACGAACTGGGCATTCCCACAGAGGAACTGCAGCCACAGGACTTTCGCT
ACCTGACCCGCATCCACTACGCAGACACGGGCGACGGCGTGTGGGGCGAG
CACGAGATAGACTACATCCTGTTCCTGCAAAAAGACGTGACGCTGCGTCC
AAATAGCAACGAGGTCAGTGAGGTGCGCTACTTGCGCCGCGATAAGATCG
ACGAGGCGGTGGCGAAGTTTAGTGCCCCGCTGACACCCTGGTTCTCTCTG
ATTCTGCAGCATCGATTGAAACTCTGGTGGGACAATTTGCACCAGCTGGA
GCAATTTGAGGACTTGAGTAATATTCAGCGCTTTTAAAAGCTTTCTAGAC
C
BS03822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-PA | 771 | CG5919-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-RB | 898 | CG5919-RB | 91..861 | 17..787 | 3855 | 100 | Plus |
CG5919-RA | 1227 | CG5919-RA | 91..861 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21270585..21271042 | 330..787 | 2290 | 100 | Plus |
3R | 32079331 | 3R | 21270216..21270530 | 17..331 | 1575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:46:19 has no hits.
BS03822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:37 Download gff for
BS03822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:34 Download gff for
BS03822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:15 Download gff for
BS03822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 91..861 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:20:30 Download gff for
BS03822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 91..861 | 17..787 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:30 Download gff for
BS03822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21270216..21270530 | 17..331 | 100 | -> | Plus |
3R | 21270587..21271042 | 332..787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:15 Download gff for
BS03822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095938..17096252 | 17..331 | 100 | -> | Plus |
arm_3R | 17096309..17096764 | 332..787 | 100 | | Plus |
BS03822.complete Sequence
803 bp (803 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634781
> BS03822.complete
GAAGTTATCAGTCGACATGTTGGCCTCTCGCTTGAATCTCCTGTTGCCCC
GCGTATCCTGGCTGCGCGGTTGCTCAACGACAGCGGTGGGCCAGAAACAT
CAGCGCCAGGTGCCCACGGAGTTCGCCGTACACGATCCTCTGCAGGCTCA
CGCTCTAAAGGAACAGTGCATCCTGGTTGACGCCAACGACCAAGCCATTG
GGGCCGCCTCTAAGGCAGACTGCCACCGTGTGCATCCAGAGACGAATGAT
GTTAAGCTCCATCGCGCCTTCAGTGTTTTTCTCTTCAATTCTCAGGGAGA
GATGCTAGTGCAGAAGCGATCGTCTCACAAGATAACCTTCCCAAACACCT
ACACCAACGCGTGCTGCAGCCATCCGCTTTACGAAATCGAACAGGAACGT
CAGGAGCGCAACGCACAGGGCATCCGTGTGGCCGCTCAACGACGTCTCAA
CTACGAACTGGGCATTCCCACAGAGGAACTGCAGCCACAGGACTTTCGCT
ACCTGACCCGCATCCACTACGCAGACACGGGCGACGGCGTGTGGGGCGAG
CACGAGATAGACTACATCCTGTTCCTGCAAAAAGACGTGACGCTGCGTCC
AAATAGCAACGAGGTCAGTGAGGTGCGCTACTTGCGCCGCGATAAGATCG
ACGAGGCGGTGGCGAAGTTTAGTGCCCCGCTGACACCCTGGTTCTCTCTG
ATTCTGCAGCATCGATTGAAACTCTGGTGGGACAATTTGCACCAGCTGGA
GCAATTTGAGGACTTGAGTAATATTCAGCGCTTTTAAAAGCTTTCTAGAC
CAT
BS03822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-RB | 771 | CG5919-PB | 1..771 | 17..787 | 3855 | 100 | Plus |
CG5919-RA | 771 | CG5919-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-RB | 898 | CG5919-RB | 91..861 | 17..787 | 3855 | 100 | Plus |
CG5919-RA | 1227 | CG5919-RA | 91..861 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21270585..21271042 | 330..787 | 2290 | 100 | Plus |
3R | 32079331 | 3R | 21270216..21270530 | 17..331 | 1575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:46:51 has no hits.
BS03822.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:38 Download gff for
BS03822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:26 Download gff for
BS03822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 80..850 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:27 Download gff for
BS03822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 96..859 | 22..785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:38 Download gff for
BS03822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 80..850 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:03 Download gff for
BS03822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5919-RA | 96..859 | 22..785 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:03 Download gff for
BS03822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21270221..21270530 | 22..331 | 100 | -> | Plus |
3R | 21270587..21271040 | 332..785 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:27 Download gff for
BS03822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095943..17096252 | 22..331 | 100 | -> | Plus |
arm_3R | 17096309..17096762 | 332..785 | 100 | | Plus |
BS03822.pep Sequence
Translation from 16 to 786
> BS03822.pep
MLASRLNLLLPRVSWLRGCSTTAVGQKHQRQVPTEFAVHDPLQAHALKEQ
CILVDANDQAIGAASKADCHRVHPETNDVKLHRAFSVFLFNSQGEMLVQK
RSSHKITFPNTYTNACCSHPLYEIEQERQERNAQGIRVAAQRRLNYELGI
PTEELQPQDFRYLTRIHYADTGDGVWGEHEIDYILFLQKDVTLRPNSNEV
SEVRYLRRDKIDEAVAKFSAPLTPWFSLILQHRLKLWWDNLHQLEQFEDL
SNIQRF*
BS03822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5919-PB | 256 | CG5919-PB | 1..256 | 1..256 | 1359 | 100 | Plus |
CG5919-PA | 256 | CG5919-PA | 1..256 | 1..256 | 1359 | 100 | Plus |