Clone BS03823 Report

Search the DGRC for BS03823

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG12107-RA
Protein status:BS03823.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03823.5prime Sequence

438 bp (437 high quality bases) assembled on 2005-12-01

> BS03823.5prime
GAAGTTATCAGTCGACATGGCGACGAAAACAAATACCATCGAGCGCAACG
GCCACTCGGCCAAAAGCTCCACACTACGGGAAATTTGCGCGCGCGCCATC
ACAAAATCGGAGTGGGAGGACAAGGAAGAGTTCCTGGACGTTATCTACTG
GTCACGCCAGGTATTCGGCATCTTTCTGGGCGTCATCTGGGGCATTGTTC
CGCTGAAGGGCTTTCTGGGCCTCGTACTATTCGCCGGCATCAGCTGCGGG
ATCGTCTACCTGTACGCCATAAACTTTCAGAACGTGGACGAGGACGCCTA
CGGAGGGGTATGGGAGCTGATCAAGGAGGGGTTCATGACGTCGTTTGCCG
GATTCCTGGTCACGTGGATCATCTTCTACACGGGCCTGCACTACGACGCC
ATAATGGCGGCGAAAGGATCTTAAAAGCTTTCTAGACC

BS03823.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12107-PA 408 CG12107-RA 1..408 17..424 2015 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12107-RA 782 CG12107-RA 103..510 17..424 2025 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7674895..7675090 229..424 965 99.5 Plus
2R 25286936 2R 7674552..7674660 17..125 545 100 Plus
2R 25286936 2R 7674719..7674824 123..228 530 100 Plus
Blast to na_te.dros performed on 2015-02-10 00:34:02 has no hits.

BS03823.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:38 Download gff for BS03823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12107-PA 1..408 17..424 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:37 Download gff for BS03823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12107-PA 1..408 17..424 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:40 Download gff for BS03823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12107-RA 99..518 10..432 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:54 Download gff for BS03823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12107-RA 99..518 10..432 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:54 Download gff for BS03823.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7674548..7674659 10..124 96 -> Plus
2R 7674721..7674824 125..228 100 -> Plus
2R 7674895..7675098 229..432 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:40 Download gff for BS03823.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3562400..3562603 229..432 97   Plus
arm_2R 3562053..3562164 10..124 96 -> Plus
arm_2R 3562226..3562329 125..228 100 -> Plus

BS03823.3prime Sequence

438 bp (437 high quality bases) assembled on 2005-12-01

> BS03823.3prime
ATGGTCTAGAAAGCTTTTAAGATCCTTTCGCCGCCATTATGGCGTCGTAG
TGCAGGCCCGTGTAGAAGATGATCCACGTGACCAGGAATCCGGCAAACGA
CGTCATGAACCCCTCCTTGATCAGCTCCCATACCCCTCCGTAGGCGTCCT
CGTCCACGTTCTGAAAGTTTATGGCGTACAGGTAGACGATCCCGCAGCTG
ATGCCGGCGAATAGTACGAGGCCCAGAAAGCCCTTCAGCGGAACAATGCC
CCAGATGACGCCCAGAAAGATGCCGAATACCTGGCGTGACCAGTAGATAA
CGTCCAGGAACTCTTCCTTGTCCTCCCACTCCGATTTTGTGATGGCGCGC
GCGCAAATTTCCCGTAGTGTGGAGCTTTTGGCCGAGTGGCCGTTGCGCTC
GATGGTATTTGTTTTCGTCGCCATGTCGACTGATAACT

BS03823.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12107-PA 408 CG12107-RA 1..408 424..17 2015 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12107-RA 782 CG12107-RA 103..510 424..17 2025 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7674895..7675090 212..17 965 99.5 Minus
2R 25286936 2R 7674552..7674660 424..316 545 100 Minus
2R 25286936 2R 7674719..7674824 318..213 530 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:23:23 has no hits.

BS03823.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:37 Download gff for BS03823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12107-PA 1..408 17..424 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:36 Download gff for BS03823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12107-PA 1..408 17..424 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:28 Download gff for BS03823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12107-RA 99..518 9..431 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:02 Download gff for BS03823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12107-RA 99..518 9..431 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:02 Download gff for BS03823.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7674548..7674659 317..431 96 -> Minus
2R 7674721..7674824 213..316 100 -> Minus
2R 7674895..7675098 9..212 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:28 Download gff for BS03823.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3562053..3562164 317..431 96 -> Minus
arm_2R 3562226..3562329 213..316 100 -> Minus
arm_2R 3562400..3562603 9..212 97   Minus

BS03823.complete Sequence

440 bp assembled on 2007-10-17

> BS03823.complete
GAAGTTATCAGTCGACATGGCGACGAAAACAAATACCATCGAGCGCAACG
GCCACTCGGCCAAAAGCTCCACACTACGGGAAATTTGCGCGCGCGCCATC
ACAAAATCGGAGTGGGAGGACAAGGAAGAGTTCCTGGACGTTATCTACTG
GTCACGCCAGGTATTCGGCATCTTTCTGGGCGTCATCTGGGGCATTGTTC
CGCTGAAGGGCTTTCTGGGCCTCGTACTATTCGCCGGCATCAGCTGCGGG
ATCGTCTACCTGTACGCCATAAACTTTCAGAACGTGGACGAGGACGCCTA
CGGAGGGGTATGGGAGCTGATCAAGGAGGGGTTCATGACGTCGTTTGCCG
GATTCCTGGTCACGTGGATCATCTTCTACACGGGCCTGCACTACGACGCC
ATAATGGCGGCGAAAGGATCTTAAAAGCTTTCTAGACCAT

BS03823.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12107-RA 408 CG12107-PA 1..408 17..424 2025 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12107-RA 782 CG12107-RA 103..510 17..424 2025 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7674895..7675090 229..424 965 99.5 Plus
2R 25286936 2R 7674552..7674660 17..125 545 100 Plus
2R 25286936 2R 7674719..7674824 123..228 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:41:18 has no hits.

BS03823.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:32 Download gff for BS03823.complete
Subject Subject Range Query Range Percent Splice Strand
CG12107-RA 1..408 17..424 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:31 Download gff for BS03823.complete
Subject Subject Range Query Range Percent Splice Strand
CG12107-RA 96..515 10..432 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:23 Download gff for BS03823.complete
Subject Subject Range Query Range Percent Splice Strand
CG12107-RA 103..508 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:35 Download gff for BS03823.complete
Subject Subject Range Query Range Percent Splice Strand
CG12107-RA 100..505 17..422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:23 Download gff for BS03823.complete
Subject Subject Range Query Range Percent Splice Strand
CG12107-RA 103..508 17..422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:23 Download gff for BS03823.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7674895..7675088 229..422 99   Plus
2R 7674552..7674659 17..124 100 -> Plus
2R 7674721..7674824 125..228 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:23 Download gff for BS03823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3562057..3562164 17..124 100 -> Plus
arm_2R 3562226..3562329 125..228 100 -> Plus
arm_2R 3562400..3562593 229..422 99   Plus

BS03823.pep Sequence

Translation from 16 to 423

> BS03823.pep
MATKTNTIERNGHSAKSSTLREICARAITKSEWEDKEEFLDVIYWSRQVF
GIFLGVIWGIVPLKGFLGLVLFAGISCGIVYLYAINFQNVDEDAYGGVWE
LIKEGFMTSFAGFLVTWIIFYTGLHYDAIMAAKGS*

BS03823.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12107-PA 135 CG12107-PA 1..135 1..135 713 100 Plus