Clone Sequence Records
BS03823.5prime Sequence
438 bp (437 high quality bases) assembled on 2005-12-01
> BS03823.5prime
GAAGTTATCAGTCGACATGGCGACGAAAACAAATACCATCGAGCGCAACG
GCCACTCGGCCAAAAGCTCCACACTACGGGAAATTTGCGCGCGCGCCATC
ACAAAATCGGAGTGGGAGGACAAGGAAGAGTTCCTGGACGTTATCTACTG
GTCACGCCAGGTATTCGGCATCTTTCTGGGCGTCATCTGGGGCATTGTTC
CGCTGAAGGGCTTTCTGGGCCTCGTACTATTCGCCGGCATCAGCTGCGGG
ATCGTCTACCTGTACGCCATAAACTTTCAGAACGTGGACGAGGACGCCTA
CGGAGGGGTATGGGAGCTGATCAAGGAGGGGTTCATGACGTCGTTTGCCG
GATTCCTGGTCACGTGGATCATCTTCTACACGGGCCTGCACTACGACGCC
ATAATGGCGGCGAAAGGATCTTAAAAGCTTTCTAGACC
BS03823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-PA | 408 | CG12107-RA | 1..408 | 17..424 | 2015 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-RA | 782 | CG12107-RA | 103..510 | 17..424 | 2025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7674895..7675090 | 229..424 | 965 | 99.5 | Plus |
2R | 25286936 | 2R | 7674552..7674660 | 17..125 | 545 | 100 | Plus |
2R | 25286936 | 2R | 7674719..7674824 | 123..228 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:34:02 has no hits.
BS03823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:38 Download gff for
BS03823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-PA | 1..408 | 17..424 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:37 Download gff for
BS03823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-PA | 1..408 | 17..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:40 Download gff for
BS03823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 99..518 | 10..432 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:54 Download gff for
BS03823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 99..518 | 10..432 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:54 Download gff for
BS03823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7674548..7674659 | 10..124 | 96 | -> | Plus |
2R | 7674721..7674824 | 125..228 | 100 | -> | Plus |
2R | 7674895..7675098 | 229..432 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:40 Download gff for
BS03823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3562400..3562603 | 229..432 | 97 | | Plus |
arm_2R | 3562053..3562164 | 10..124 | 96 | -> | Plus |
arm_2R | 3562226..3562329 | 125..228 | 100 | -> | Plus |
BS03823.3prime Sequence
438 bp (437 high quality bases) assembled on 2005-12-01
> BS03823.3prime
ATGGTCTAGAAAGCTTTTAAGATCCTTTCGCCGCCATTATGGCGTCGTAG
TGCAGGCCCGTGTAGAAGATGATCCACGTGACCAGGAATCCGGCAAACGA
CGTCATGAACCCCTCCTTGATCAGCTCCCATACCCCTCCGTAGGCGTCCT
CGTCCACGTTCTGAAAGTTTATGGCGTACAGGTAGACGATCCCGCAGCTG
ATGCCGGCGAATAGTACGAGGCCCAGAAAGCCCTTCAGCGGAACAATGCC
CCAGATGACGCCCAGAAAGATGCCGAATACCTGGCGTGACCAGTAGATAA
CGTCCAGGAACTCTTCCTTGTCCTCCCACTCCGATTTTGTGATGGCGCGC
GCGCAAATTTCCCGTAGTGTGGAGCTTTTGGCCGAGTGGCCGTTGCGCTC
GATGGTATTTGTTTTCGTCGCCATGTCGACTGATAACT
BS03823.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-PA | 408 | CG12107-RA | 1..408 | 424..17 | 2015 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-RA | 782 | CG12107-RA | 103..510 | 424..17 | 2025 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7674895..7675090 | 212..17 | 965 | 99.5 | Minus |
2R | 25286936 | 2R | 7674552..7674660 | 424..316 | 545 | 100 | Minus |
2R | 25286936 | 2R | 7674719..7674824 | 318..213 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:23:23 has no hits.
BS03823.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:37 Download gff for
BS03823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-PA | 1..408 | 17..424 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:36 Download gff for
BS03823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-PA | 1..408 | 17..424 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:28 Download gff for
BS03823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 99..518 | 9..431 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:02 Download gff for
BS03823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 99..518 | 9..431 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:02 Download gff for
BS03823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7674548..7674659 | 317..431 | 96 | -> | Minus |
2R | 7674721..7674824 | 213..316 | 100 | -> | Minus |
2R | 7674895..7675098 | 9..212 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:28 Download gff for
BS03823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3562053..3562164 | 317..431 | 96 | -> | Minus |
arm_2R | 3562226..3562329 | 213..316 | 100 | -> | Minus |
arm_2R | 3562400..3562603 | 9..212 | 97 | | Minus |
BS03823.complete Sequence
440 bp assembled on 2007-10-17
> BS03823.complete
GAAGTTATCAGTCGACATGGCGACGAAAACAAATACCATCGAGCGCAACG
GCCACTCGGCCAAAAGCTCCACACTACGGGAAATTTGCGCGCGCGCCATC
ACAAAATCGGAGTGGGAGGACAAGGAAGAGTTCCTGGACGTTATCTACTG
GTCACGCCAGGTATTCGGCATCTTTCTGGGCGTCATCTGGGGCATTGTTC
CGCTGAAGGGCTTTCTGGGCCTCGTACTATTCGCCGGCATCAGCTGCGGG
ATCGTCTACCTGTACGCCATAAACTTTCAGAACGTGGACGAGGACGCCTA
CGGAGGGGTATGGGAGCTGATCAAGGAGGGGTTCATGACGTCGTTTGCCG
GATTCCTGGTCACGTGGATCATCTTCTACACGGGCCTGCACTACGACGCC
ATAATGGCGGCGAAAGGATCTTAAAAGCTTTCTAGACCAT
BS03823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-RA | 408 | CG12107-PA | 1..408 | 17..424 | 2025 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-RA | 782 | CG12107-RA | 103..510 | 17..424 | 2025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7674895..7675090 | 229..424 | 965 | 99.5 | Plus |
2R | 25286936 | 2R | 7674552..7674660 | 17..125 | 545 | 100 | Plus |
2R | 25286936 | 2R | 7674719..7674824 | 123..228 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:41:18 has no hits.
BS03823.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:32 Download gff for
BS03823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 1..408 | 17..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:31 Download gff for
BS03823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 96..515 | 10..432 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:23 Download gff for
BS03823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 103..508 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:35 Download gff for
BS03823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 100..505 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:23 Download gff for
BS03823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12107-RA | 103..508 | 17..422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:23 Download gff for
BS03823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7674895..7675088 | 229..422 | 99 | | Plus |
2R | 7674552..7674659 | 17..124 | 100 | -> | Plus |
2R | 7674721..7674824 | 125..228 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:23 Download gff for
BS03823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3562057..3562164 | 17..124 | 100 | -> | Plus |
arm_2R | 3562226..3562329 | 125..228 | 100 | -> | Plus |
arm_2R | 3562400..3562593 | 229..422 | 99 | | Plus |
BS03823.pep Sequence
Translation from 16 to 423
> BS03823.pep
MATKTNTIERNGHSAKSSTLREICARAITKSEWEDKEEFLDVIYWSRQVF
GIFLGVIWGIVPLKGFLGLVLFAGISCGIVYLYAINFQNVDEDAYGGVWE
LIKEGFMTSFAGFLVTWIIFYTGLHYDAIMAAKGS*
BS03823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12107-PA | 135 | CG12107-PA | 1..135 | 1..135 | 713 | 100 | Plus |