Clone Sequence Records
BS03824.3prime Sequence
423 bp (422 high quality bases) assembled on 2005-12-01
> BS03824.3prime
ATGGTCTAGAAAGCTTCTAGGCAGAGTTGTGGATGTTGAGACGGAAGATG
TCGTGGGCCACAAAGAAGGTGCCTGCGTTGGCCTTCAGGAAAAAGACCTG
CGAGAAGGCATGTGGGGGATCGTCATCGCACTGTAGTCTTCCAAGGACGT
TGATCAGAACTCCGCCATCGAAAGTTGGCTGCGAGTCCACTGTGGTTATC
ACTCTGGTAATCTTCTGAAAGCTCAGACTCTGAACTTTTTCCAGAATCTT
GGGTGCCCCCTGTATTTGGTGGCCTTCAAAGGTCATGAATGAGTCGGTAG
CGCTATAGAAATTAACCACGTTCGCCCGATTCGCCGGGTCATCGAATATC
GCATAGTACTGCTGCACAAATCCCTTGCCAATGTCCTCGTACTGCGGATT
CAGCGACATGTCGACTGATAACT
BS03824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1740-PA | 393 | Ntf-2-RA | 1..393 | 409..17 | 1965 | 100 | Minus |
CG10174-PA | 393 | Ntf-2r-RA | 1..334 | 409..76 | 1120 | 93.4 | Minus |
CG10174-PA | 393 | Ntf-2r-RA | 349..393 | 61..17 | 175 | 95.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ntf-2-RE | 3078 | CG1740-RE | 146..542 | 409..13 | 1970 | 99.7 | Minus |
Ntf-2-RA | 755 | CG1740-RA | 146..542 | 409..13 | 1970 | 99.7 | Minus |
Ntf-2r-RA | 771 | CG10174-RA | 119..525 | 409..3 | 1540 | 91.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18454767..18455173 | 409..3 | 1540 | 91.9 | Minus |
X | 23542271 | X | 21038743..21038863 | 133..13 | 590 | 99.2 | Minus |
X | 23542271 | X | 21035614..21035722 | 409..301 | 545 | 100 | Minus |
X | 23542271 | X | 21036536..21036637 | 232..131 | 510 | 100 | Minus |
X | 23542271 | X | 21036399..21036470 | 301..230 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:37:47 has no hits.
BS03824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:39 Download gff for
BS03824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-PA | 1..393 | 17..409 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:38 Download gff for
BS03824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1740-PA | 1..393 | 17..409 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:27:54 Download gff for
BS03824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 140..546 | 9..416 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:25 Download gff for
BS03824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 140..546 | 9..416 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:25 Download gff for
BS03824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18454767..18455176 | 1..409 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:27:54 Download gff for
BS03824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18454767..18455176 | 1..409 | 91 | | Minus |
BS03824.5prime Sequence
423 bp (422 high quality bases) assembled on 2005-12-01
> BS03824.5prime
GAAGTTATCAGTCGACATGTCGCTGAATCCGCAGTACGAGGACATTGGCA
AGGGATTTGTGCAGCAGTACTATGCGATATTCGATGACCCGGCGAATCGG
GCGAACGTGGTTAATTTCTATAGCGCTACCGACTCATTCATGACCTTTGA
AGGCCACCAAATACAGGGGGCACCCAAGATTCTGGAAAAAGTTCAGAGTC
TGAGCTTTCAGAAGATTACCAGAGTGATAACCACAGTGGACTCGCAGCCA
ACTTTCGATGGCGGAGTTCTGATCAACGTCCTTGGAAGACTACAGTGCGA
TGACGATCCCCCACATGCCTTCTCGCAGGTCTTTTTCCTGAAGGCCAACG
CAGGCACCTTCTTTGTGGCCCACGACATCTTCCGTCTCAACATCCACAAC
TCTGCCTAGAAGCTTTCTAGACC
BS03824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1740-PA | 393 | Ntf-2-RA | 1..393 | 17..409 | 1965 | 100 | Plus |
CG10174-PA | 393 | Ntf-2r-RA | 1..334 | 17..350 | 1120 | 93.4 | Plus |
CG10174-PA | 393 | Ntf-2r-RA | 349..393 | 365..409 | 175 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:16:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ntf-2-RE | 3078 | CG1740-RE | 146..542 | 17..413 | 1970 | 99.7 | Plus |
Ntf-2-RA | 755 | CG1740-RA | 146..542 | 17..413 | 1970 | 99.7 | Plus |
Ntf-2r-RA | 771 | CG10174-RA | 119..525 | 17..423 | 1540 | 91.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18454767..18455173 | 17..423 | 1540 | 91.9 | Plus |
X | 23542271 | X | 21038743..21038863 | 293..413 | 590 | 99.2 | Plus |
X | 23542271 | X | 21035614..21035722 | 17..125 | 545 | 100 | Plus |
X | 23542271 | X | 21036536..21036637 | 194..295 | 510 | 100 | Plus |
X | 23542271 | X | 21036399..21036470 | 125..196 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:16:23 has no hits.
BS03824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:40 Download gff for
BS03824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-PA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:40 Download gff for
BS03824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1740-PA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:57 Download gff for
BS03824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 140..546 | 10..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:07 Download gff for
BS03824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 140..546 | 10..417 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:07 Download gff for
BS03824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18454767..18455173 | 17..423 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:57 Download gff for
BS03824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18454767..18455173 | 17..423 | 91 | | Plus |
BS03824.complete Sequence
425 bp (425 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634782
> BS03824.complete
GAAGTTATCAGTCGACATGTCGCTGAATCCGCAGTACGAGGACATTGGCA
AGGGATTTGTGCAGCAGTACTATGCGATATTCGATGACCCGGCGAATCGG
GCGAACGTGGTTAATTTCTATAGCGCTACCGACTCATTCATGACCTTTGA
AGGCCACCAAATACAGGGGGCACCCAAGATTCTGGAAAAAGTTCAGAGTC
TGAGCTTTCAGAAGATTACCAGAGTGATAACCACAGTGGACTCGCAGCCA
ACTTTCGATGGCGGAGTTCTGATCAACGTCCTTGGAAGACTACAGTGCGA
TGACGATCCCCCACATGCCTTCTCGCAGGTCTTTTTCCTGAAGGCCAACG
CAGGCACCTTCTTTGTGGCCCACGACATCTTCCGTCTCAACATCCACAAC
TCTGCCTAGAAGCTTTCTAGACCAT
BS03824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ntf-2-RE | 393 | CG1740-PE | 1..393 | 17..409 | 1965 | 100 | Plus |
Ntf-2-RA | 393 | CG1740-PA | 1..393 | 17..409 | 1965 | 100 | Plus |
Ntf-2r-RA | 393 | CG10174-PA | 1..393 | 17..409 | 1530 | 92.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ntf-2-RE | 3078 | CG1740-RE | 146..542 | 17..413 | 1970 | 99.7 | Plus |
Ntf-2-RA | 755 | CG1740-RA | 146..542 | 17..413 | 1970 | 99.7 | Plus |
Ntf-2r-RA | 771 | CG10174-RA | 119..525 | 17..423 | 1540 | 91.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18454767..18455173 | 17..423 | 1540 | 91.9 | Plus |
X | 23542271 | X | 21038743..21038863 | 293..413 | 590 | 99.2 | Plus |
X | 23542271 | X | 21035614..21035722 | 17..125 | 545 | 100 | Plus |
X | 23542271 | X | 21036536..21036637 | 194..295 | 510 | 100 | Plus |
X | 23542271 | X | 21036399..21036470 | 125..196 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:05:48 has no hits.
BS03824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:39 Download gff for
BS03824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:28 Download gff for
BS03824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 135..541 | 10..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:36 Download gff for
BS03824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 146..538 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:39 Download gff for
BS03824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 135..541 | 10..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:54 Download gff for
BS03824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ntf-2-RA | 146..538 | 17..409 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:54 Download gff for
BS03824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18454767..18455159 | 17..409 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:36 Download gff for
BS03824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18454767..18455159 | 17..409 | 92 | | Plus |
BS03824.pep Sequence
Translation from 16 to 408
> BS03824.pep
MSLNPQYEDIGKGFVQQYYAIFDDPANRANVVNFYSATDSFMTFEGHQIQ
GAPKILEKVQSLSFQKITRVITTVDSQPTFDGGVLINVLGRLQCDDDPPH
AFSQVFFLKANAGTFFVAHDIFRLNIHNSA*
BS03824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ntf-2-PE | 130 | CG1740-PE | 1..130 | 1..130 | 680 | 100 | Plus |
Ntf-2-PA | 130 | CG1740-PA | 1..130 | 1..130 | 680 | 100 | Plus |
Ntf-2r-PA | 130 | CG10174-PA | 1..130 | 1..130 | 594 | 87.7 | Plus |
Ntf-2-PB | 129 | CG1740-PB | 1..128 | 1..128 | 591 | 88.3 | Plus |
Ntf-2-PC | 89 | CG1740-PC | 1..89 | 42..130 | 462 | 100 | Plus |