Clone Sequence Records
BS03829.5prime Sequence
339 bp (338 high quality bases) assembled on 2005-11-29
> BS03829.5prime
GAAGTTATCAGTCGACATGGCCAACTTCAGTCAGCTAAGAATCACCATTG
GATTTTGTGTGATTTTGGCCGTTATCCTGGAACAACCATTCACTGCAGAG
GCGGTTGTTCGAGATGCATGCCAGACGGCGCCGAATAAGAGTGTGTGGCT
ATGTAGCCCATCTACCCTGGGCATATTTTTCGATCCGGAGACACAACGTT
GTCGCTACATGGGATGCAGTAATCGAAAGCTGTTCTTAACCCTTGAAGAC
TGCGAAAAGATTTGCAACAATCCGCGGCACATCAAGCGACGCAACCAAGC
AAAGGCCAATGAAACATCACATTGAAAGCTTTCTAGACC
BS03829.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-PA | 309 | CG31778-RA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-RB | 918 | CG31778-RB | 516..825 | 17..326 | 1550 | 100 | Plus |
| CG31778-RA | 1137 | CG31778-RA | 516..825 | 17..326 | 1550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3704418..3704633 | 326..111 | 1080 | 100 | Minus |
| 2L | 23513712 | 2L | 3704879..3704973 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:50:36 has no hits.
BS03829.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:49 Download gff for
BS03829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-PA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:51 Download gff for
BS03829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-PA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:21:02 Download gff for
BS03829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 511..825 | 12..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:17:30 Download gff for
BS03829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 511..825 | 12..326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:17:30 Download gff for
BS03829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3704423..3704633 | 111..321 | 100 | <- | Minus |
| 2L | 3704880..3704978 | 12..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:21:02 Download gff for
BS03829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3704423..3704633 | 111..321 | 100 | <- | Minus |
| arm_2L | 3704880..3704978 | 12..110 | 97 | | Minus |
BS03829.3prime Sequence
339 bp (338 high quality bases) assembled on 2005-12-01
> BS03829.3prime
ATGGTCTAGAAAGCTTTCAATGTGATGTTTCATTGGCCTTTGCTTGGTTG
CGTCGCTTGATGTGCCGCGGATTGTTGCAAATCTTTTCGCAGTCTTCAAG
GGTTAAGAACAGCTTTCGATTACTGCATCCCATGTAGCGACAACGTTGTG
TCTCCGGATCGAAAAATATGCCCAGGGTAGATGGGCTACATAGCCACACA
CTCTTATTCGGCGCCGTCTGGCATGCATCTCGAACAACCGCCTCTGCAGT
GAATGGTTGTTCCAGGATAACGGCCAAAATCACACAAAATCCAATGGTGA
TTCTTAGCTGACTGAAGTTGGCCATGTCGACTGATAACT
BS03829.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-PA | 309 | CG31778-RA | 1..309 | 325..17 | 1545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-RB | 918 | CG31778-RB | 516..825 | 325..16 | 1550 | 100 | Minus |
| CG31778-RA | 1137 | CG31778-RA | 516..825 | 325..16 | 1550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3704418..3704633 | 16..231 | 1080 | 100 | Plus |
| 2L | 23513712 | 2L | 3704879..3704973 | 231..325 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:20:12 has no hits.
BS03829.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:48 Download gff for
BS03829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-PA | 1..309 | 17..325 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:49 Download gff for
BS03829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-PA | 1..309 | 17..325 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:17:04 Download gff for
BS03829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 511..825 | 16..330 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:44 Download gff for
BS03829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 511..825 | 16..330 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:44 Download gff for
BS03829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3704423..3704633 | 21..231 | 100 | <- | Plus |
| 2L | 3704880..3704978 | 232..330 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:17:04 Download gff for
BS03829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3704880..3704978 | 232..330 | 97 | | Plus |
| arm_2L | 3704423..3704633 | 21..231 | 100 | <- | Plus |
BS03829.complete Sequence
341 bp (341 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634783
> BS03829.complete
GAAGTTATCAGTCGACATGGCCAACTTCAGTCAGCTAAGAATCACCATTG
GATTTTGTGTGATTTTGGCCGTTATCCTGGAACAACCATTCACTGCAGAG
GCGGTTGTTCGAGATGCATGCCAGACGGCGCCGAATAAGAGTGTGTGGCT
ATGTAGCCCATCTACCCTGGGCATATTTTTCGATCCGGAGACACAACGTT
GTCGCTACATGGGATGCAGTAATCGAAAGCTGTTCTTAACCCTTGAAGAC
TGCGAAAAGATTTGCAACAATCCGCGGCACATCAAGCGACGCAACCAAGC
AAAGGCCAATGAAACATCACATTGAAAGCTTTCTAGACCAT
BS03829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-RB | 309 | CG31778-PB | 1..309 | 17..325 | 1545 | 100 | Plus |
| CG31778-RA | 309 | CG31778-PA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-RB | 918 | CG31778-RB | 516..825 | 17..326 | 1550 | 100 | Plus |
| CG31778-RA | 1137 | CG31778-RA | 516..825 | 17..326 | 1550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3704418..3704633 | 326..111 | 1080 | 100 | Minus |
| 2L | 23513712 | 2L | 3704879..3704973 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:40:13 has no hits.
BS03829.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:23 Download gff for
BS03829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:50:56 Download gff for
BS03829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 485..799 | 12..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:03 Download gff for
BS03829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 516..823 | 17..324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:23 Download gff for
BS03829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 485..799 | 12..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:53 Download gff for
BS03829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31778-RA | 516..823 | 17..324 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:53 Download gff for
BS03829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3704420..3704633 | 111..324 | 100 | <- | Minus |
| 2L | 3704880..3704973 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:03 Download gff for
BS03829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3704880..3704973 | 17..110 | 100 | | Minus |
| arm_2L | 3704420..3704633 | 111..324 | 100 | <- | Minus |
BS03829.pep Sequence
Translation from 16 to 324
> BS03829.pep
MANFSQLRITIGFCVILAVILEQPFTAEAVVRDACQTAPNKSVWLCSPST
LGIFFDPETQRCRYMGCSNRKLFLTLEDCEKICNNPRHIKRRNQAKANET
SH*
BS03829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31778-PB | 102 | CG31778-PB | 1..102 | 1..102 | 547 | 100 | Plus |
| CG31778-PA | 102 | CG31778-PA | 1..102 | 1..102 | 547 | 100 | Plus |
