Clone Sequence Records
BS03834.3prime Sequence
684 bp (683 high quality bases) assembled on 2005-12-01
> BS03834.3prime
ATGGTCTAGAAAGCTTTTAACGATAGAGATGGTCGGCCTGCAAGTTAGAG
GCAATCTCGGACTCCCACTTGTCGCCGTTGCAGAGAAGCTTCTCCTTGTT
GTACAGCAGCTCCTCGTGCGTCTCCGTGGAGAACTCGAAGTTGGGTCCCT
CGACGATGGCGTCCACGGGACAGGCTTCCTGACAGAATCCGCAGTAGATG
CACTTGGTCATGTCGATATCGTAGCGTGTGGTACGTCTGCTGCCATCCGC
GCGCTCCTCCGCTTCGATGGTGATCGCCTGTGCGGGGCAAATAGCCTCGC
ATAGCTTGCAAGCGATGCAGCGCTCCTCTCCACTGGGATAACGACGAAGG
GCATGTTCTCCGCGGAATCGCGGGCTCAGTGGTCCCTTTTCAAAGGGATA
GTTGATAGTGGCCGGTTCCTTGAAGATGTGCGCCAGGGTGACGGCAAATC
CACGTAAGAGTTCACCGAAGAACATGGTGGATGCAGCACGGTCCGTGATG
TCGGCAAACTCCATGCTCAGTTCCTTGTTGTTTACATACACATAGCCCTT
GGGAACCTCGACGATATCTTTGGGTTCTGCTCGCTGGGCGGCCAGCAGCC
GGGCTCCATGGCTGCCAAACAGGCGCTGTCCGTTGCGCGATGCGGTGAAA
ATTCGCATAGTTAGCGACATGTCGACTGATAACT
BS03834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3944-PA | 654 | ND23-RA | 1..654 | 670..17 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-RA | 819 | CG3944-RA | 89..743 | 670..16 | 3275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15836354..15836807 | 178..631 | 2270 | 100 | Plus |
3R | 32079331 | 3R | 15836124..15836288 | 16..180 | 825 | 100 | Plus |
3R | 32079331 | 3R | 15836989..15837029 | 630..670 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:00:08 has no hits.
BS03834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:52 Download gff for
BS03834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:54 Download gff for
BS03834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3944-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:19:34 Download gff for
BS03834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..755 | 3..670 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:09 Download gff for
BS03834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..755 | 3..670 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:09 Download gff for
BS03834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15836112..15836286 | 3..178 | 97 | <- | Plus |
3R | 15836355..15836806 | 179..630 | 100 | <- | Plus |
3R | 15836990..15837029 | 631..670 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:19:34 Download gff for
BS03834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11661834..11662008 | 3..178 | 97 | <- | Plus |
arm_3R | 11662077..11662528 | 179..630 | 100 | <- | Plus |
arm_3R | 11662712..11662751 | 631..670 | 100 | | Plus |
BS03834.5prime Sequence
684 bp (683 high quality bases) assembled on 2005-11-29
> BS03834.5prime
GAAGTTATCAGTCGACATGTCGCTAACTATGCGAATTTTCACCGCATCGC
GCAACGGACAGCGCCTGTTTGGCAGCCATGGAGCCCGGCTGCTGGCCGCC
CAGCGAGCAGAACCCAAAGATATCGTCGAGGTTCCCAAGGGCTATGTGTA
TGTAAACAACAAGGAACTGAGCATGGAGTTTGCCGACATCACGGACCGTG
CTGCATCCACCATGTTCTTCGGTGAACTCTTACGTGGATTTGCCGTCACC
CTGGCGCACATCTTCAAGGAACCGGCCACTATCAACTATCCCTTTGAAAA
GGGACCACTGAGCCCGCGATTCCGCGGAGAACATGCCCTTCGTCGTTATC
CCAGTGGAGAGGAGCGCTGCATCGCTTGCAAGCTATGCGAGGCTATTTGC
CCCGCACAGGCGATCACCATCGAAGCGGAGGAGCGCGCGGATGGCAGCAG
ACGTACCACACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGAT
TCTGTCAGGAAGCCTGTCCCGTGGACGCCATCGTCGAGGGACCCAACTTC
GAGTTCTCCACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAAGCT
TCTCTGCAACGGCGACAAGTGGGAGTCCGAGATTGCCTCTAACTTGCAGG
CCGACCATCTCTATCGTTAAAAGCTTTCTAGACC
BS03834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3944-PA | 654 | ND23-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-RA | 819 | CG3944-RA | 89..743 | 17..671 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15836354..15836807 | 509..56 | 2270 | 100 | Minus |
3R | 32079331 | 3R | 15836124..15836288 | 671..507 | 825 | 100 | Minus |
3R | 32079331 | 3R | 15836989..15837029 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:49:34 has no hits.
BS03834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:53 Download gff for
BS03834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:56 Download gff for
BS03834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3944-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:27:34 Download gff for
BS03834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..755 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:22 Download gff for
BS03834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..755 | 17..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:22 Download gff for
BS03834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15836112..15836286 | 509..684 | 97 | <- | Minus |
3R | 15836355..15836806 | 57..508 | 100 | <- | Minus |
3R | 15836990..15837029 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:27:34 Download gff for
BS03834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11661834..11662008 | 509..684 | 97 | <- | Minus |
arm_3R | 11662077..11662528 | 57..508 | 100 | <- | Minus |
arm_3R | 11662712..11662751 | 17..56 | 100 | | Minus |
BS03834.complete Sequence
686 bp (686 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634784
> BS03834.complete
GAAGTTATCAGTCGACATGTCGCTAACTATGCGAATTTTCACCGCATCGC
GCAACGGACAGCGCCTGTTTGGCAGCCATGGAGCCCGGCTGCTGGCCGCC
CAGCGAGCAGAACCCAAAGATATCGTCGAGGTTCCCAAGGGCTATGTGTA
TGTAAACAACAAGGAACTGAGCATGGAGTTTGCCGACATCACGGACCGTG
CTGCATCCACCATGTTCTTCGGTGAACTCTTACGTGGATTTGCCGTCACC
CTGGCGCACATCTTCAAGGAACCGGCCACTATCAACTATCCCTTTGAAAA
GGGACCACTGAGCCCGCGATTCCGCGGAGAACATGCCCTTCGTCGTTATC
CCAGTGGAGAGGAGCGCTGCATCGCTTGCAAGCTATGCGAGGCTATTTGC
CCCGCACAGGCGATCACCATCGAAGCGGAGGAGCGCGCGGATGGCAGCAG
ACGTACCACACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGAT
TCTGTCAGGAAGCCTGTCCCGTGGACGCCATCGTCGAGGGACCCAACTTC
GAGTTCTCCACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAAGCT
TCTCTGCAACGGCGACAAGTGGGAGTCCGAGATTGCCTCTAACTTGCAGG
CCGACCATCTCTATCGTTAAAAGCTTTCTAGACCAT
BS03834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-RA | 654 | CG3944-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-RA | 819 | CG3944-RA | 89..743 | 17..671 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15836354..15836807 | 509..56 | 2270 | 100 | Minus |
3R | 32079331 | 3R | 15836124..15836288 | 671..507 | 825 | 100 | Minus |
3R | 32079331 | 3R | 15836989..15837029 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:41:42 has no hits.
BS03834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:42 Download gff for
BS03834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:31 Download gff for
BS03834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 69..735 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:54 Download gff for
BS03834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..740 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:42 Download gff for
BS03834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 69..735 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:47 Download gff for
BS03834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..740 | 17..668 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:47 Download gff for
BS03834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15836127..15836286 | 509..668 | 100 | <- | Minus |
3R | 15836355..15836806 | 57..508 | 100 | <- | Minus |
3R | 15836990..15837029 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:54 Download gff for
BS03834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11661849..11662008 | 509..668 | 100 | <- | Minus |
arm_3R | 11662077..11662528 | 57..508 | 100 | <- | Minus |
arm_3R | 11662712..11662751 | 17..56 | 100 | | Minus |
BS03834.pep Sequence
Translation from 16 to 669
> BS03834.pep
MSLTMRIFTASRNGQRLFGSHGARLLAAQRAEPKDIVEVPKGYVYVNNKE
LSMEFADITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSP
RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRY
DIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLCNGD
KWESEIASNLQADHLYR*
BS03834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-PA | 217 | CG3944-PA | 1..217 | 1..217 | 1150 | 100 | Plus |