Clone BS03834 Report

Search the DGRC for BS03834

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptND23-RA
Protein status:BS03834.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03834.3prime Sequence

684 bp (683 high quality bases) assembled on 2005-12-01

> BS03834.3prime
ATGGTCTAGAAAGCTTTTAACGATAGAGATGGTCGGCCTGCAAGTTAGAG
GCAATCTCGGACTCCCACTTGTCGCCGTTGCAGAGAAGCTTCTCCTTGTT
GTACAGCAGCTCCTCGTGCGTCTCCGTGGAGAACTCGAAGTTGGGTCCCT
CGACGATGGCGTCCACGGGACAGGCTTCCTGACAGAATCCGCAGTAGATG
CACTTGGTCATGTCGATATCGTAGCGTGTGGTACGTCTGCTGCCATCCGC
GCGCTCCTCCGCTTCGATGGTGATCGCCTGTGCGGGGCAAATAGCCTCGC
ATAGCTTGCAAGCGATGCAGCGCTCCTCTCCACTGGGATAACGACGAAGG
GCATGTTCTCCGCGGAATCGCGGGCTCAGTGGTCCCTTTTCAAAGGGATA
GTTGATAGTGGCCGGTTCCTTGAAGATGTGCGCCAGGGTGACGGCAAATC
CACGTAAGAGTTCACCGAAGAACATGGTGGATGCAGCACGGTCCGTGATG
TCGGCAAACTCCATGCTCAGTTCCTTGTTGTTTACATACACATAGCCCTT
GGGAACCTCGACGATATCTTTGGGTTCTGCTCGCTGGGCGGCCAGCAGCC
GGGCTCCATGGCTGCCAAACAGGCGCTGTCCGTTGCGCGATGCGGTGAAA
ATTCGCATAGTTAGCGACATGTCGACTGATAACT

BS03834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3944-PA 654 ND23-RA 1..654 670..17 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-RA 819 CG3944-RA 89..743 670..16 3275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15836354..15836807 178..631 2270 100 Plus
3R 32079331 3R 15836124..15836288 16..180 825 100 Plus
3R 32079331 3R 15836989..15837029 630..670 205 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:00:08 has no hits.

BS03834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:52 Download gff for BS03834.3prime
Subject Subject Range Query Range Percent Splice Strand
ND23-PA 1..654 17..670 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:54 Download gff for BS03834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3944-PA 1..654 17..670 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:19:34 Download gff for BS03834.3prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..755 3..670 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:09 Download gff for BS03834.3prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..755 3..670 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:09 Download gff for BS03834.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15836112..15836286 3..178 97 <- Plus
3R 15836355..15836806 179..630 100 <- Plus
3R 15836990..15837029 631..670 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:19:34 Download gff for BS03834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11661834..11662008 3..178 97 <- Plus
arm_3R 11662077..11662528 179..630 100 <- Plus
arm_3R 11662712..11662751 631..670 100   Plus

BS03834.5prime Sequence

684 bp (683 high quality bases) assembled on 2005-11-29

> BS03834.5prime
GAAGTTATCAGTCGACATGTCGCTAACTATGCGAATTTTCACCGCATCGC
GCAACGGACAGCGCCTGTTTGGCAGCCATGGAGCCCGGCTGCTGGCCGCC
CAGCGAGCAGAACCCAAAGATATCGTCGAGGTTCCCAAGGGCTATGTGTA
TGTAAACAACAAGGAACTGAGCATGGAGTTTGCCGACATCACGGACCGTG
CTGCATCCACCATGTTCTTCGGTGAACTCTTACGTGGATTTGCCGTCACC
CTGGCGCACATCTTCAAGGAACCGGCCACTATCAACTATCCCTTTGAAAA
GGGACCACTGAGCCCGCGATTCCGCGGAGAACATGCCCTTCGTCGTTATC
CCAGTGGAGAGGAGCGCTGCATCGCTTGCAAGCTATGCGAGGCTATTTGC
CCCGCACAGGCGATCACCATCGAAGCGGAGGAGCGCGCGGATGGCAGCAG
ACGTACCACACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGAT
TCTGTCAGGAAGCCTGTCCCGTGGACGCCATCGTCGAGGGACCCAACTTC
GAGTTCTCCACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAAGCT
TCTCTGCAACGGCGACAAGTGGGAGTCCGAGATTGCCTCTAACTTGCAGG
CCGACCATCTCTATCGTTAAAAGCTTTCTAGACC

BS03834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3944-PA 654 ND23-RA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-RA 819 CG3944-RA 89..743 17..671 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15836354..15836807 509..56 2270 100 Minus
3R 32079331 3R 15836124..15836288 671..507 825 100 Minus
3R 32079331 3R 15836989..15837029 57..17 205 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:49:34 has no hits.

BS03834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:53 Download gff for BS03834.5prime
Subject Subject Range Query Range Percent Splice Strand
ND23-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:56 Download gff for BS03834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3944-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:27:34 Download gff for BS03834.5prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..755 17..684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:22 Download gff for BS03834.5prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..755 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:22 Download gff for BS03834.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15836112..15836286 509..684 97 <- Minus
3R 15836355..15836806 57..508 100 <- Minus
3R 15836990..15837029 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:27:34 Download gff for BS03834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11661834..11662008 509..684 97 <- Minus
arm_3R 11662077..11662528 57..508 100 <- Minus
arm_3R 11662712..11662751 17..56 100   Minus

BS03834.complete Sequence

686 bp (686 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634784

> BS03834.complete
GAAGTTATCAGTCGACATGTCGCTAACTATGCGAATTTTCACCGCATCGC
GCAACGGACAGCGCCTGTTTGGCAGCCATGGAGCCCGGCTGCTGGCCGCC
CAGCGAGCAGAACCCAAAGATATCGTCGAGGTTCCCAAGGGCTATGTGTA
TGTAAACAACAAGGAACTGAGCATGGAGTTTGCCGACATCACGGACCGTG
CTGCATCCACCATGTTCTTCGGTGAACTCTTACGTGGATTTGCCGTCACC
CTGGCGCACATCTTCAAGGAACCGGCCACTATCAACTATCCCTTTGAAAA
GGGACCACTGAGCCCGCGATTCCGCGGAGAACATGCCCTTCGTCGTTATC
CCAGTGGAGAGGAGCGCTGCATCGCTTGCAAGCTATGCGAGGCTATTTGC
CCCGCACAGGCGATCACCATCGAAGCGGAGGAGCGCGCGGATGGCAGCAG
ACGTACCACACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGAT
TCTGTCAGGAAGCCTGTCCCGTGGACGCCATCGTCGAGGGACCCAACTTC
GAGTTCTCCACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAAGCT
TCTCTGCAACGGCGACAAGTGGGAGTCCGAGATTGCCTCTAACTTGCAGG
CCGACCATCTCTATCGTTAAAAGCTTTCTAGACCAT

BS03834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-RA 654 CG3944-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-RA 819 CG3944-RA 89..743 17..671 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15836354..15836807 509..56 2270 100 Minus
3R 32079331 3R 15836124..15836288 671..507 825 100 Minus
3R 32079331 3R 15836989..15837029 57..17 205 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:41:42 has no hits.

BS03834.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:42 Download gff for BS03834.complete
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:31 Download gff for BS03834.complete
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 69..735 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:54 Download gff for BS03834.complete
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..740 17..668 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:42 Download gff for BS03834.complete
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 69..735 17..684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:47 Download gff for BS03834.complete
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..740 17..668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:47 Download gff for BS03834.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15836127..15836286 509..668 100 <- Minus
3R 15836355..15836806 57..508 100 <- Minus
3R 15836990..15837029 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:54 Download gff for BS03834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11661849..11662008 509..668 100 <- Minus
arm_3R 11662077..11662528 57..508 100 <- Minus
arm_3R 11662712..11662751 17..56 100   Minus

BS03834.pep Sequence

Translation from 16 to 669

> BS03834.pep
MSLTMRIFTASRNGQRLFGSHGARLLAAQRAEPKDIVEVPKGYVYVNNKE
LSMEFADITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSP
RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRY
DIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLCNGD
KWESEIASNLQADHLYR*

BS03834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-PA 217 CG3944-PA 1..217 1..217 1150 100 Plus