Clone BS03835 Report

Search the DGRC for BS03835

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptRpL17-RA
Protein status:BS03835.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03835.3prime Sequence

591 bp (590 high quality bases) assembled on 2005-12-01

> BS03835.3prime
ATGGTCTAGAAAGCTTTTATTCAGAACGCAACATCTTCTCCTTTTGGCGC
TGCAGCTTCTTCTTGGAGAGCTTCTTCTTGGCGGGCTCGTCATCAGTGGC
CTTGGAGACAAGCTCCTCCTTCTCGGTGAGGATGACCTCGACGTGGCATG
GCGACGACATGTAGGGATTGATGCGACCATGGGCACGGTACGTGCGGCGA
CGCAGGCACTGAGCGCGGTTCACCTGAATGTGGTGGACGACCAGGCGGTC
GGCATCCAGACCCTTGCAATCAGCGTTGGCCTCGGCGTTGCGCAGCAGCT
GCAACAGGAACTCGGCGGACTTCTTGGGCCAGCGACCCTGCGTGGTCTTC
CACTGCTTGGCCTGGGCACAACGACCGACTCCTCCGTTGAAGCGACGGAA
GGGCACGCACTCCTTCTGGTCGATGACGGCCTTCAGGTAACGCTGGGCAC
GGCGCAGGGGCATGCGCTTGATGGCCTGGGCGGTCTCATGTGTGTTCTTG
AAGTGCACACGTAGATTGGGCCCGCGCGCCTTGCACGACTTGGCCACGTT
GTCTGACTCGCGTGAGTAACGGCCCATGTCGACTGATAACT

BS03835.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3203-PB 561 RpL17-RB 1..561 577..17 2780 99.8 Minus
CG3203-PC 561 RpL17-RC 1..561 577..17 2780 99.8 Minus
CG3203-PD 561 RpL17-RD 1..561 577..17 2780 99.8 Minus
CG3203-PA 561 RpL17-RA 1..561 577..17 2780 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
RpL17-RE 830 CG3203-RE 30..592 577..15 2800 99.8 Minus
RpL17-RA 837 CG3203-RA 37..599 577..15 2800 99.8 Minus
RpL17-RD 1100 CG3203-RD 300..862 577..15 2800 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6741775..6742258 15..498 2405 99.8 Plus
X 23542271 X 6743058..6743138 497..577 405 100 Plus
Blast to na_te.dros performed on 2015-02-06 13:32:45 has no hits.

BS03835.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:55 Download gff for BS03835.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-PB 1..561 17..577 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:57 Download gff for BS03835.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3203-PA 1..561 17..577 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:53:59 Download gff for BS03835.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-RC 141..717 2..577 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:40 Download gff for BS03835.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-RD 300..876 2..577 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:40 Download gff for BS03835.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6741761..6742256 2..496 98 <- Plus
X 6743058..6743138 497..577 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:53:59 Download gff for BS03835.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6635794..6636289 2..496 98 <- Plus
arm_X 6637091..6637171 497..577 100   Plus

BS03835.5prime Sequence

591 bp (590 high quality bases) assembled on 2005-11-29

> BS03835.5prime
GAAGTTATCAGTCGACATGGGCCGTTACTCACGCGAGTCAGACAACGTGG
CCAAGTCGTGCAAGGCGCGCGGGCCCAATCTACGTGTGCACTTCAAGAAC
ACACATGAGACCGCCCAGGCCATCAAGCGCATGCCCCTGCGCCGTGCCCA
GCGTTACCTGAAGGCCGTCATCGACCAGAAGGAGTGCGTGCCCTTCCGTC
GCTTCAACGGAGGAGTCGGTCGTTGTGCCCAGGCCAAGCAGTGGAAGACC
ACGCAGGGTCGCTGGCCCAAGAAGTCCGCCGAGTTCCTGTTGCAGCTGCT
GCGCAACGCCGAGGCCAACGCTGATTGCAAGGGTCTGGATGCCGACCGCC
TGGTCGTCCACCACATTCAGGTGAACCGCGCTCAGTGCCTGCGTCGCCGC
ACGTACCGTGCCCATGGTCGCATCAATCCCTACATGTCGTCGCCATGCCA
CGTCGAGGTCATCCTCACCGAGAAGGAGGAGCTTGTCTCCAAGGCCACTG
ATGACGAGCCCGCCAAGAAGAAGCTCTCCAAGAAGAAGCTGCAGCGCCAA
AAGGAGAAGATGTTGCGTTCTGAATAAAAGCTTTCTAGACC

BS03835.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3203-PB 561 RpL17-RB 1..561 17..577 2780 99.8 Plus
CG3203-PC 561 RpL17-RC 1..561 17..577 2780 99.8 Plus
CG3203-PD 561 RpL17-RD 1..561 17..577 2780 99.8 Plus
CG3203-PA 561 RpL17-RA 1..561 17..577 2780 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
RpL17-RE 830 CG3203-RE 30..592 17..579 2800 99.8 Plus
RpL17-RA 837 CG3203-RA 37..599 17..579 2800 99.8 Plus
RpL17-RD 1100 CG3203-RD 300..862 17..579 2800 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6741775..6742258 579..96 2405 99.8 Minus
X 23542271 X 6743058..6743138 97..17 405 100 Minus
Blast to na_te.dros performed on 2015-02-02 12:09:20 has no hits.

BS03835.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:55 Download gff for BS03835.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-PB 1..561 17..577 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:59 Download gff for BS03835.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3203-PA 1..561 17..577 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:46 Download gff for BS03835.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-RC 141..716 17..591 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:29 Download gff for BS03835.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL17-RD 300..875 17..591 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:29 Download gff for BS03835.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6741762..6742256 98..591 98 <- Minus
X 6743058..6743138 17..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:46 Download gff for BS03835.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6635795..6636289 98..591 98 <- Minus
arm_X 6637091..6637171 17..97 100   Minus

BS03835.complete Sequence

593 bp (593 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634785

> BS03835.complete
GAAGTTATCAGTCGACATGGGCCGTTACTCACGCGAGTCAGACAACGTGG
CCAAGTCGTGCAAGGCGCGCGGGCCCAATCTACGTGTGCACTTCAAGAAC
ACACATGAGACCGCCCAGGCCATCAAGCGCATGCCCCTGCGCCGTGCCCA
GCGTTACCTGAAGGCCGTCATCGACCAGAAGGAGTGCGTGCCCTTCCGTC
GCTTCAACGGAGGAGTCGGTCGTTGTGCCCAGGCCAAGCAGTGGAAGACC
ACGCAGGGTCGCTGGCCCAAGAAGTCCGCCGAGTTCCTGTTGCAGCTGCT
GCGCAACGCCGAGGCCAACGCTGATTGCAAGGGTCTGGATGCCGACCGCC
TGGTCGTCCACCACATTCAGGTGAACCGCGCTCAGTGCCTGCGTCGCCGC
ACGTACCGTGCCCATGGTCGCATCAATCCCTACATGTCGTCGCCATGCCA
CGTCGAGGTCATCCTCACCGAGAAGGAGGAGCTTGTCTCCAAGGCCACTG
ATGACGAGCCCGCCAAGAAGAAGCTCTCCAAGAAGAAGCTGCAGCGCCAA
AAGGAGAAGATGTTGCGTTCTGAATAAAAGCTTTCTAGACCAT

BS03835.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpL17-RE 561 CG3203-PE 1..561 17..577 2790 99.8 Plus
RpL17-RA 561 CG3203-PA 1..561 17..577 2790 99.8 Plus
RpL17-RD 561 CG3203-PD 1..561 17..577 2790 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
RpL17-RE 830 CG3203-RE 30..592 17..579 2800 99.8 Plus
RpL17-RA 837 CG3203-RA 37..599 17..579 2800 99.8 Plus
RpL17-RD 1100 CG3203-RD 300..862 17..579 2800 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6741775..6742258 579..96 2405 99.8 Minus
X 23542271 X 6743058..6743138 97..17 405 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:16:29 has no hits.

BS03835.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:37 Download gff for BS03835.complete
Subject Subject Range Query Range Percent Splice Strand
RpL17-RD 1..561 17..577 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:26 Download gff for BS03835.complete
Subject Subject Range Query Range Percent Splice Strand
RpL17-RC 119..695 17..592 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:33 Download gff for BS03835.complete
Subject Subject Range Query Range Percent Splice Strand
RpL17-RC 141..699 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:37 Download gff for BS03835.complete
Subject Subject Range Query Range Percent Splice Strand
RpL17-RD 265..841 17..592 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:30 Download gff for BS03835.complete
Subject Subject Range Query Range Percent Splice Strand
RpL17-RD 300..858 17..575 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:30 Download gff for BS03835.complete
Subject Subject Range Query Range Percent Splice Strand
X 6741779..6742256 98..575 99 <- Minus
X 6743058..6743138 17..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:33 Download gff for BS03835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6635812..6636289 98..575 99 <- Minus
arm_X 6637091..6637171 17..97 100   Minus

BS03835.pep Sequence

Translation from 16 to 576

> BS03835.pep
MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKA
VIDQKECVPFRRFNGGVGRCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEA
NADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVIL
TEKEELVSKATDDEPAKKKLSKKKLQRQKEKMLRSE*

BS03835.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpL17-PE 186 CG3203-PE 1..186 1..186 976 100 Plus
RpL17-PA 186 CG3203-PA 1..186 1..186 976 100 Plus
RpL17-PD 186 CG3203-PD 1..186 1..186 976 100 Plus
RpL17-PC 186 CG3203-PC 1..186 1..186 976 100 Plus
RpL17-PB 186 CG3203-PB 1..186 1..186 976 100 Plus