Clone Sequence Records
BS03835.3prime Sequence
591 bp (590 high quality bases) assembled on 2005-12-01
> BS03835.3prime
ATGGTCTAGAAAGCTTTTATTCAGAACGCAACATCTTCTCCTTTTGGCGC
TGCAGCTTCTTCTTGGAGAGCTTCTTCTTGGCGGGCTCGTCATCAGTGGC
CTTGGAGACAAGCTCCTCCTTCTCGGTGAGGATGACCTCGACGTGGCATG
GCGACGACATGTAGGGATTGATGCGACCATGGGCACGGTACGTGCGGCGA
CGCAGGCACTGAGCGCGGTTCACCTGAATGTGGTGGACGACCAGGCGGTC
GGCATCCAGACCCTTGCAATCAGCGTTGGCCTCGGCGTTGCGCAGCAGCT
GCAACAGGAACTCGGCGGACTTCTTGGGCCAGCGACCCTGCGTGGTCTTC
CACTGCTTGGCCTGGGCACAACGACCGACTCCTCCGTTGAAGCGACGGAA
GGGCACGCACTCCTTCTGGTCGATGACGGCCTTCAGGTAACGCTGGGCAC
GGCGCAGGGGCATGCGCTTGATGGCCTGGGCGGTCTCATGTGTGTTCTTG
AAGTGCACACGTAGATTGGGCCCGCGCGCCTTGCACGACTTGGCCACGTT
GTCTGACTCGCGTGAGTAACGGCCCATGTCGACTGATAACT
BS03835.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3203-PB | 561 | RpL17-RB | 1..561 | 577..17 | 2780 | 99.8 | Minus |
CG3203-PC | 561 | RpL17-RC | 1..561 | 577..17 | 2780 | 99.8 | Minus |
CG3203-PD | 561 | RpL17-RD | 1..561 | 577..17 | 2780 | 99.8 | Minus |
CG3203-PA | 561 | RpL17-RA | 1..561 | 577..17 | 2780 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL17-RE | 830 | CG3203-RE | 30..592 | 577..15 | 2800 | 99.8 | Minus |
RpL17-RA | 837 | CG3203-RA | 37..599 | 577..15 | 2800 | 99.8 | Minus |
RpL17-RD | 1100 | CG3203-RD | 300..862 | 577..15 | 2800 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6741775..6742258 | 15..498 | 2405 | 99.8 | Plus |
X | 23542271 | X | 6743058..6743138 | 497..577 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:32:45 has no hits.
BS03835.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:55 Download gff for
BS03835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-PB | 1..561 | 17..577 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:57 Download gff for
BS03835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3203-PA | 1..561 | 17..577 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:53:59 Download gff for
BS03835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RC | 141..717 | 2..577 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:40 Download gff for
BS03835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RD | 300..876 | 2..577 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:40 Download gff for
BS03835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6741761..6742256 | 2..496 | 98 | <- | Plus |
X | 6743058..6743138 | 497..577 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:53:59 Download gff for
BS03835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6635794..6636289 | 2..496 | 98 | <- | Plus |
arm_X | 6637091..6637171 | 497..577 | 100 | | Plus |
BS03835.5prime Sequence
591 bp (590 high quality bases) assembled on 2005-11-29
> BS03835.5prime
GAAGTTATCAGTCGACATGGGCCGTTACTCACGCGAGTCAGACAACGTGG
CCAAGTCGTGCAAGGCGCGCGGGCCCAATCTACGTGTGCACTTCAAGAAC
ACACATGAGACCGCCCAGGCCATCAAGCGCATGCCCCTGCGCCGTGCCCA
GCGTTACCTGAAGGCCGTCATCGACCAGAAGGAGTGCGTGCCCTTCCGTC
GCTTCAACGGAGGAGTCGGTCGTTGTGCCCAGGCCAAGCAGTGGAAGACC
ACGCAGGGTCGCTGGCCCAAGAAGTCCGCCGAGTTCCTGTTGCAGCTGCT
GCGCAACGCCGAGGCCAACGCTGATTGCAAGGGTCTGGATGCCGACCGCC
TGGTCGTCCACCACATTCAGGTGAACCGCGCTCAGTGCCTGCGTCGCCGC
ACGTACCGTGCCCATGGTCGCATCAATCCCTACATGTCGTCGCCATGCCA
CGTCGAGGTCATCCTCACCGAGAAGGAGGAGCTTGTCTCCAAGGCCACTG
ATGACGAGCCCGCCAAGAAGAAGCTCTCCAAGAAGAAGCTGCAGCGCCAA
AAGGAGAAGATGTTGCGTTCTGAATAAAAGCTTTCTAGACC
BS03835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3203-PB | 561 | RpL17-RB | 1..561 | 17..577 | 2780 | 99.8 | Plus |
CG3203-PC | 561 | RpL17-RC | 1..561 | 17..577 | 2780 | 99.8 | Plus |
CG3203-PD | 561 | RpL17-RD | 1..561 | 17..577 | 2780 | 99.8 | Plus |
CG3203-PA | 561 | RpL17-RA | 1..561 | 17..577 | 2780 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL17-RE | 830 | CG3203-RE | 30..592 | 17..579 | 2800 | 99.8 | Plus |
RpL17-RA | 837 | CG3203-RA | 37..599 | 17..579 | 2800 | 99.8 | Plus |
RpL17-RD | 1100 | CG3203-RD | 300..862 | 17..579 | 2800 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6741775..6742258 | 579..96 | 2405 | 99.8 | Minus |
X | 23542271 | X | 6743058..6743138 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:09:20 has no hits.
BS03835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:55 Download gff for
BS03835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-PB | 1..561 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:50:59 Download gff for
BS03835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3203-PA | 1..561 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:46 Download gff for
BS03835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RC | 141..716 | 17..591 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:29 Download gff for
BS03835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RD | 300..875 | 17..591 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:29 Download gff for
BS03835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6741762..6742256 | 98..591 | 98 | <- | Minus |
X | 6743058..6743138 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:46 Download gff for
BS03835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6635795..6636289 | 98..591 | 98 | <- | Minus |
arm_X | 6637091..6637171 | 17..97 | 100 | | Minus |
BS03835.complete Sequence
593 bp (593 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634785
> BS03835.complete
GAAGTTATCAGTCGACATGGGCCGTTACTCACGCGAGTCAGACAACGTGG
CCAAGTCGTGCAAGGCGCGCGGGCCCAATCTACGTGTGCACTTCAAGAAC
ACACATGAGACCGCCCAGGCCATCAAGCGCATGCCCCTGCGCCGTGCCCA
GCGTTACCTGAAGGCCGTCATCGACCAGAAGGAGTGCGTGCCCTTCCGTC
GCTTCAACGGAGGAGTCGGTCGTTGTGCCCAGGCCAAGCAGTGGAAGACC
ACGCAGGGTCGCTGGCCCAAGAAGTCCGCCGAGTTCCTGTTGCAGCTGCT
GCGCAACGCCGAGGCCAACGCTGATTGCAAGGGTCTGGATGCCGACCGCC
TGGTCGTCCACCACATTCAGGTGAACCGCGCTCAGTGCCTGCGTCGCCGC
ACGTACCGTGCCCATGGTCGCATCAATCCCTACATGTCGTCGCCATGCCA
CGTCGAGGTCATCCTCACCGAGAAGGAGGAGCTTGTCTCCAAGGCCACTG
ATGACGAGCCCGCCAAGAAGAAGCTCTCCAAGAAGAAGCTGCAGCGCCAA
AAGGAGAAGATGTTGCGTTCTGAATAAAAGCTTTCTAGACCAT
BS03835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL17-RE | 561 | CG3203-PE | 1..561 | 17..577 | 2790 | 99.8 | Plus |
RpL17-RA | 561 | CG3203-PA | 1..561 | 17..577 | 2790 | 99.8 | Plus |
RpL17-RD | 561 | CG3203-PD | 1..561 | 17..577 | 2790 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL17-RE | 830 | CG3203-RE | 30..592 | 17..579 | 2800 | 99.8 | Plus |
RpL17-RA | 837 | CG3203-RA | 37..599 | 17..579 | 2800 | 99.8 | Plus |
RpL17-RD | 1100 | CG3203-RD | 300..862 | 17..579 | 2800 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6741775..6742258 | 579..96 | 2405 | 99.8 | Minus |
X | 23542271 | X | 6743058..6743138 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:16:29 has no hits.
BS03835.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:37 Download gff for
BS03835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RD | 1..561 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:26 Download gff for
BS03835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RC | 119..695 | 17..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:33 Download gff for
BS03835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RC | 141..699 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:37 Download gff for
BS03835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RD | 265..841 | 17..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:30 Download gff for
BS03835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL17-RD | 300..858 | 17..575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:30 Download gff for
BS03835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6741779..6742256 | 98..575 | 99 | <- | Minus |
X | 6743058..6743138 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:33 Download gff for
BS03835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6635812..6636289 | 98..575 | 99 | <- | Minus |
arm_X | 6637091..6637171 | 17..97 | 100 | | Minus |
BS03835.pep Sequence
Translation from 16 to 576
> BS03835.pep
MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKA
VIDQKECVPFRRFNGGVGRCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEA
NADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVIL
TEKEELVSKATDDEPAKKKLSKKKLQRQKEKMLRSE*
BS03835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL17-PE | 186 | CG3203-PE | 1..186 | 1..186 | 976 | 100 | Plus |
RpL17-PA | 186 | CG3203-PA | 1..186 | 1..186 | 976 | 100 | Plus |
RpL17-PD | 186 | CG3203-PD | 1..186 | 1..186 | 976 | 100 | Plus |
RpL17-PC | 186 | CG3203-PC | 1..186 | 1..186 | 976 | 100 | Plus |
RpL17-PB | 186 | CG3203-PB | 1..186 | 1..186 | 976 | 100 | Plus |