Clone Sequence Records
BS03836.3prime Sequence
690 bp (689 high quality bases) assembled on 2005-12-01
> BS03836.3prime
ATGGTCTAGAAAGCTTCTAGGTGCTCTTCTGCACCTGGATGGGATTCTGC
TTGAGGTGCAGGTAGATGGATCGCATGCGGGAGACGTCCTTTCCCGCCTT
GTTCACCTTGGGATTGAAGTCGCAGAGCTTGGCTATGCGCTCCCATTCGG
TGCCCGGCTCGATGGTGCCATTCTCCAGGGTGGCGGCTTGTTTCTCGGCA
TTCCGCGACGCCAGTTTGGTCTTCGATATGGACTCGCCAATCTGGCGCAA
CCAGTCGTCCAGCTCCTTCTTGGACTGCTGTCGGAGTTCCTCCTTTTTTC
GCTCCTCCTCGATGTCCTTCTCCTCCAGTCGTTGCTTTTGCTCTTCGCGC
CATTTGCGTATCTTTTCGGGCTCTTCCCGCGACGGCGGCGGACCGGATAT
GCCCACGGGTTCATTGGACTCGCCACCAATGACCTCAAAACTGCCAGTGG
AGGATTCGAGGCCACCCGTGCCGCCAGCAGAGAGCAAATCGCCTTCGGAG
GCGGTGCCTCCCAGAAGCTCACCCAAGCCCTCGTCTGTGGATGCAGCCGG
AGGAGCTGATGCAGATCCACCCGTAATCTCCGCCTCCAAGTCCCCGAGAG
CTGACTGTTCGCGCGCCAGGAACTCGGCCGCCGGATCCACGTCCTCCTTG
GCAGCGAAATCGTCTCCGAAGTCCATGTCGACTGATAACT
BS03836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6948-PA | 660 | Clc-RA | 1..660 | 676..17 | 3275 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clc-RD | 1073 | CG6948-RD | 135..795 | 677..17 | 3290 | 99.8 | Minus |
| Clc-RC | 1230 | CG6948-RC | 292..952 | 677..17 | 3290 | 99.8 | Minus |
| Clc-RB | 1005 | CG6948-RB | 67..727 | 677..17 | 3290 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20242797..20243457 | 677..17 | 3290 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:19:33 has no hits.
BS03836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:56 Download gff for
BS03836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clc-PA | 1..660 | 17..676 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:00 Download gff for
BS03836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6948-PA | 1..660 | 17..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:34:53 Download gff for
BS03836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clc-RB | 61..736 | 7..684 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:33 Download gff for
BS03836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clc-RB | 61..736 | 7..684 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:33 Download gff for
BS03836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20242791..20243466 | 7..684 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:34:53 Download gff for
BS03836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20235891..20236566 | 7..684 | 98 | | Minus |
BS03836.5prime Sequence
690 bp (689 high quality bases) assembled on 2005-12-01
> BS03836.5prime
GAAGTTATCAGTCGACATGGACTTCGGAGACGATTTCGCTGCCAAGGAGG
ACGTGGATCCGGCGGCCGAGTTCCTGGCGCGCGAACAGTCAGCTCTCGGG
GACTTGGAGGCGGAGATTACGGGTGGATCTGCATCAGCTCCTCCGGCTGC
ATCCACAGACGAGGGCTTGGGTGAGCTTCTGGGAGGCACCGCCTCCGAAG
GCGATTTGCTCTCTGCTGGCGGCACGGGTGGCCTCGAATCCTCCACTGGC
AGTTTTGAGGTCATTGGTGGCGAGTCCAATGAACCCGTGGGCATATCCGG
TCCGCCGCCGTCGCGGGAAGAGCCCGAAAAGATACGCAAATGGCGCGAAG
AGCAAAAGCAACGACTGGAGGAGAAGGACATCGAGGAGGAGCGAAAAAAG
GAGGAACTCCGACAGCAGTCCAAGAAGGAGCTGGACGACTGGTTGCGCCA
GATTGGCGAGTCCATATCGAAGACCAAACTGGCGTCGCGGAATGCCGAGA
AACAAGCCGCCACCCTGGAGAATGGCACCATCGAGCCGGGCACCGAATGG
GAGCGCATAGCCAAGCTCTGCGACTTCAATCCCAAGGTGAACAAGGCGGG
AAAGGACGTCTCCCGCATGCGATCCATCTACCTGCACCTCAAGCAGAATC
CCATCCAGGTGCAGAAGAGCACCTAGAAGCTTTCTAGACC
BS03836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6948-PA | 660 | Clc-RA | 1..660 | 17..676 | 3275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clc-RD | 1073 | CG6948-RD | 135..795 | 16..676 | 3290 | 99.8 | Plus |
| Clc-RC | 1230 | CG6948-RC | 292..952 | 16..676 | 3290 | 99.8 | Plus |
| Clc-RB | 1005 | CG6948-RB | 67..727 | 16..676 | 3290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20242797..20243457 | 16..676 | 3290 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:04:38 has no hits.
BS03836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:57 Download gff for
BS03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clc-PA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:01 Download gff for
BS03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6948-PA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:44:31 Download gff for
BS03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clc-RB | 61..736 | 9..686 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:28:03 Download gff for
BS03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clc-RB | 61..736 | 9..686 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:28:03 Download gff for
BS03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20242791..20243466 | 9..686 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:44:31 Download gff for
BS03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20235891..20236566 | 9..686 | 98 | | Plus |
BS03836.complete Sequence
692 bp (692 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634786
> BS03836.complete
GAAGTTATCAGTCGACATGGACTTCGGAGACGATTTCGCTGCCAAGGAGG
ACGTGGATCCGGCGGCCGAGTTCCTGGCGCGCGAACAGTCAGCTCTCGGG
GACTTGGAGGCGGAGATTACGGGTGGATCTGCATCAGCTCCTCCGGCTGC
ATCCACAGACGAGGGCTTGGGTGAGCTTCTGGGAGGCACCGCCTCCGAAG
GCGATTTGCTCTCTGCTGGCGGCACGGGTGGCCTCGAATCCTCCACTGGC
AGTTTTGAGGTCATTGGTGGCGAGTCCAATGAACCCGTGGGCATATCCGG
TCCGCCGCCGTCGCGGGAAGAGCCCGAAAAGATACGCAAATGGCGCGAAG
AGCAAAAGCAACGACTGGAGGAGAAGGACATCGAGGAGGAGCGAAAAAAG
GAGGAACTCCGACAGCAGTCCAAGAAGGAGCTGGACGACTGGTTGCGCCA
GATTGGCGAGTCCATATCGAAGACCAAACTGGCGTCGCGGAATGCCGAGA
AACAAGCCGCCACCCTGGAGAATGGCACCATCGAGCCGGGCACCGAATGG
GAGCGCATAGCCAAGCTCTGCGACTTCAATCCCAAGGTGAACAAGGCGGG
AAAGGACGTCTCCCGCATGCGATCCATCTACCTGCACCTCAAGCAGAATC
CCATCCAGGTGCAGAAGAGCACCTAGAAGCTTTCTAGACCAT
BS03836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clc-RD | 660 | CG6948-PD | 1..660 | 17..676 | 3285 | 99.8 | Plus |
| Clc-RC | 660 | CG6948-PC | 1..660 | 17..676 | 3285 | 99.8 | Plus |
| Clc-RB | 660 | CG6948-PB | 1..660 | 17..676 | 3285 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clc-RD | 1073 | CG6948-RD | 135..795 | 16..676 | 3290 | 99.8 | Plus |
| Clc-RC | 1230 | CG6948-RC | 292..952 | 16..676 | 3290 | 99.8 | Plus |
| Clc-RB | 1005 | CG6948-RB | 67..727 | 16..676 | 3290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20242797..20243457 | 16..676 | 3290 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:42:55 has no hits.
BS03836.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:43 Download gff for
BS03836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clc-RA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:32 Download gff for
BS03836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clc-RA | 185..860 | 9..686 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:22 Download gff for
BS03836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clc-RB | 68..727 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:43 Download gff for
BS03836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clc-RA | 185..860 | 9..686 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:53 Download gff for
BS03836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clc-RB | 68..727 | 17..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:53 Download gff for
BS03836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20242798..20243457 | 17..676 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:22 Download gff for
BS03836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20235898..20236557 | 17..676 | 99 | | Plus |
BS03836.pep Sequence
Translation from 16 to 675
> BS03836.pep
MDFGDDFAAKEDVDPAAEFLAREQSALGDLEAEITGGSASAPPAASTDEG
LGELLGGTASEGDLLSAGGTGGLESSTGSFEVIGGESNEPVGISGPPPSR
EEPEKIRKWREEQKQRLEEKDIEEERKKEELRQQSKKELDDWLRQIGESI
SKTKLASRNAEKQAATLENGTIEPGTEWERIAKLCDFNPKVNKAGKDVSR
MRSIYLHLKQNPIQVQKST*
BS03836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clc-PD | 219 | CG6948-PD | 1..219 | 1..219 | 1117 | 100 | Plus |
| Clc-PC | 219 | CG6948-PC | 1..219 | 1..219 | 1117 | 100 | Plus |
| Clc-PB | 219 | CG6948-PB | 1..219 | 1..219 | 1117 | 100 | Plus |
| Clc-PA | 219 | CG6948-PA | 1..219 | 1..219 | 1117 | 100 | Plus |
