Clone Sequence Records
BS03838.3prime Sequence
938 bp (828 high quality bases) assembled on 2005-12-01
> BS03838.3prime
ATGGTCTAGAAAGCTTTTACATGTAGAGTTTGATCAACTCGTCGCTTACG
GCCGAGGGTGTTAGTCTTCCGAGGTCGGTGAAGAGCAGGGTGATGTAGAC
GGGTGGCGTATAGTCGACCAGCGGGTGCACTTTGCTTACATCGTTTAGGT
GTTTGCGGGAGTACTTGTACTCGTTTGGCAGATCGCGCTGATTGAGTGGA
TACAGACGGCTGAACTTGAAGCTTTCGGCCAGAACGTAGAAAGGTTTCTT
CATCTCACGGGCGCACAGACCCATGGTGTAGGTGCCAATGCGGTTGATAA
TGCCACCACTCTCCACCACGGCTTCAGCCCCCACAAGCACAAAGTCCACC
GATTCCATAACATAGCCGGTGGCTGAGTCCAGAATGAGCGTGCAATCGAT
GCCGGCCGCATGCAGATCCTTAACCATCTCTTCGCCAGAGTTTCCCGTGC
CGCCCTGCGTCACATAAACGTGGAAGGACTTTTTGTTCTGCGAGGCTGTA
ATCAGCGCCTTGAGGACCACCCGGGATCGGGAGTGCGTCAATATACGGCA
GCCATCGGTAATGAACCTTTGGGCCTGCTGGGCAATCACCTGCCGGGAAT
TGAGCAACTTGGTGAGGAAGATTTTTCCGCGATTCAACATAATCTGCCGG
CACTCCTCCATGTGCTTGTCGTCCAGACTGAGGGTGATGAACCTGCAAAA
GAGCTCTCCGGCAGAAACAATGGCTGCTATAGACAAATCCGTATTCCGCA
TGGCAGCCACCGCTTCCCTCATGGTTGTGTGTAGAATATGAATGGTTCCA
AATTGTTTCTTTTCCAGGATCATTAGCAGAGTCCTGATAGCCGCAATGCC
GGAGGACAGATCCTTGTCCTCGTCCAGGAGCTGCAGGAAGTATTTGACCA
CATCAAAATCCTGGCCATTTTCCGTAATTTTGCGGCAT
BS03838.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7883-PA | 921 | eIF2B-alpha-RA | 8..921 | 930..17 | 4570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF2B-alpha-RA | 1005 | CG7883-RA | 62..982 | 938..17 | 4585 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29934811..29935082 | 164..435 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 29935357..29935570 | 588..801 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 29935137..29935294 | 435..592 | 790 | 100 | Plus |
3R | 32079331 | 3R | 29934605..29934753 | 17..165 | 745 | 100 | Plus |
3R | 32079331 | 3R | 29935633..29935735 | 802..904 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:56:23 has no hits.
BS03838.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:58 Download gff for
BS03838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7883-PA | 1..921 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:03 Download gff for
BS03838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7883-PA | 1..921 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:30 Download gff for
BS03838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-alpha-RA | 62..986 | 13..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:41:19 Download gff for
BS03838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-alpha-RA | 62..986 | 13..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:41:19 Download gff for
BS03838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29934601..29934751 | 13..163 | 98 | <- | Plus |
3R | 29934811..29935081 | 164..434 | 100 | <- | Plus |
3R | 29935137..29935291 | 435..589 | 100 | <- | Plus |
3R | 29935359..29935570 | 590..801 | 100 | <- | Plus |
3R | 29935633..29935734 | 802..903 | 100 | <- | Plus |
3R | 29935794..29935827 | 904..938 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:30 Download gff for
BS03838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25760859..25761013 | 435..589 | 100 | <- | Plus |
arm_3R | 25760323..25760473 | 13..163 | 98 | <- | Plus |
arm_3R | 25760533..25760803 | 164..434 | 100 | <- | Plus |
arm_3R | 25761081..25761292 | 590..801 | 100 | <- | Plus |
arm_3R | 25761355..25761456 | 802..903 | 100 | <- | Plus |
arm_3R | 25761516..25761549 | 904..938 | 97 | | Plus |
BS03838.5prime Sequence
884 bp (725 high quality bases) assembled on 2005-12-01
> BS03838.5prime
GAAGTTATCAGTCGACATGCCGCAAATTACGGAAAATGGCCAGGATTTTG
ATGTGGTCAAATACTTCCTGCAGCTCCTGGACGAGGACAAGGATCTGTCC
TCCGGCATTGCGGCTATCAGGACTCTGCTAATGATCCTGGAAAAGAAACA
ATTTGGAACCATTCATATTCTACACACAACCATGAGGGAAGCGGTGGCTG
CCATGCGGAATACGGATTTGTCTATAGCAGCCATTGTTTCTGCCGGAGAG
CTCTTTTGCAGGTTCATCACCCTCAGTCTGGACGACAAGCACATGGAGGA
GTGCCGGCAGATTATGTTGAATCGCGGAAAAATCTTCCTCACCAAGTTGC
TCAATTCCCGGCAGGTGATTGCCCAGCAGGCCCAAAGGTTCATTACCGAT
GGCTGCCGTATATTGACGCACTCCCGATCCCGGGTGGTCCTCAAGGCGCT
GATTACAGCCTCGCAGAACAAAAAGTCCTTCCACGTTTATGTGACGCAGG
GCGGCACGGGAAACTCTGGCGAAGAGATGGTTAAGGATCTGCATGCGGCC
GGCATCGATTGCACGCTCATTCTGGACTCAGCCACCGGCTATGTTATGGA
ATCGGTGGACTTTGTGCTTGTGGGGGCTGAAGCCGTGGTGGAGAGTGGTG
GCATTATCAACCGCATTGGCACCTACACCATGGGTCTGTGCGCCCGTGAG
ATGAAGAAACCTTTCTACGTTCTGGCCGAAAGCTTCAAGTTCAGCCGTCT
GTATCCACTCAATCAGCGCGATCTGCCAAACGAGTACAAGTACTCCCGCA
AACACCTAAACGATGTAAGCAAAGTGCACCCGCTGGTCGACTATACGCCA
CCCGTCTACATCACCCTGCTCTTCACCGACCTCG
BS03838.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7883-PA | 921 | eIF2B-alpha-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF2B-alpha-RA | 1005 | CG7883-RA | 62..929 | 17..884 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29934811..29935082 | 790..519 | 1360 | 100 | Minus |
3R | 32079331 | 3R | 29935357..29935570 | 366..153 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 29935137..29935294 | 519..362 | 790 | 100 | Minus |
3R | 32079331 | 3R | 29935633..29935735 | 152..50 | 515 | 100 | Minus |
3R | 32079331 | 3R | 29934658..29934753 | 884..789 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:44:54 has no hits.
BS03838.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:00 Download gff for
BS03838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7883-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:04 Download gff for
BS03838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7883-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:15 Download gff for
BS03838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-alpha-RA | 54..929 | 8..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:27 Download gff for
BS03838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-alpha-RA | 54..929 | 8..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:27 Download gff for
BS03838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29935359..29935570 | 153..364 | 100 | <- | Minus |
3R | 29935633..29935734 | 51..152 | 100 | <- | Minus |
3R | 29934658..29934751 | 791..884 | 100 | <- | Minus |
3R | 29934811..29935081 | 520..790 | 100 | <- | Minus |
3R | 29935137..29935291 | 365..519 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:15 Download gff for
BS03838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25760380..25760473 | 791..884 | 100 | <- | Minus |
arm_3R | 25760533..25760803 | 520..790 | 100 | <- | Minus |
arm_3R | 25760859..25761013 | 365..519 | 100 | <- | Minus |
arm_3R | 25761081..25761292 | 153..364 | 100 | <- | Minus |
arm_3R | 25761355..25761456 | 51..152 | 100 | <- | Minus |
BS03838.complete Sequence
953 bp (953 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634787
> BS03838.complete
GAAGTTATCAGTCGACATGCCGCAAATTACGGAAAATGGCCAGGATTTTG
ATGTGGTCAAATACTTCCTGCAGCTCCTGGACGAGGACAAGGATCTGTCC
TCCGGCATTGCGGCTATCAGGACTCTGCTAATGATCCTGGAAAAGAAACA
ATTTGGAACCATTCATATTCTACACACAACCATGAGGGAAGCGGTGGCTG
CCATGCGGAATACGGATTTGTCTATAGCAGCCATTGTTTCTGCCGGAGAG
CTCTTTTGCAGGTTCATCACCCTCAGTCTGGACGACAAGCACATGGAGGA
GTGCCGGCAGATTATGTTGAATCGCGGAAAAATCTTCCTCACCAAGTTGC
TCAATTCCCGGCAGGTGATTGCCCAGCAGGCCCAAAGGTTCATTACCGAT
GGCTGCCGTATATTGACGCACTCCCGATCCCGGGTGGTCCTCAAGGCGCT
GATTACAGCCTCGCAGAACAAAAAGTCCTTCCACGTTTATGTGACGCAGG
GCGGCACGGGAAACTCTGGCGAAGAGATGGTTAAGGATCTGCATGCGGCC
GGCATCGATTGCACGCTCATTCTGGACTCAGCCACCGGCTATGTTATGGA
ATCGGTGGACTTTGTGCTTGTGGGGGCTGAAGCCGTGGTGGAGAGTGGTG
GCATTATCAACCGCATTGGCACCTACACCATGGGTCTGTGCGCCCGTGAG
ATGAAGAAACCTTTCTACGTTCTGGCCGAAAGCTTCAAGTTCAGCCGTCT
GTATCCACTCAATCAGCGCGATCTGCCAAACGAGTACAAGTACTCCCGCA
AACACCTAAACGATGTAAGCAAAGTGCACCCGCTGGTCGACTATACGCCA
CCCGTCTACATCACCCTGCTCTTCACCGACCTCGGAAGACTAACACCCTC
GGCCGTAAGCGACGAGTTGATCAAACTCTACATGTAAAAGCTTTCTAGAC
CAT
BS03838.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF2B-alpha-RA | 921 | CG7883-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF2B-alpha-RA | 1005 | CG7883-RA | 62..982 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29934811..29935082 | 790..519 | 1360 | 100 | Minus |
3R | 32079331 | 3R | 29935357..29935570 | 366..153 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 29935137..29935294 | 519..362 | 790 | 100 | Minus |
3R | 32079331 | 3R | 29934605..29934753 | 937..789 | 745 | 100 | Minus |
3R | 32079331 | 3R | 29935633..29935735 | 152..50 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:53:13 has no hits.
BS03838.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:44 Download gff for
BS03838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-alpha-RA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:34 Download gff for
BS03838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-alpha-RA | 42..974 | 8..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:32 Download gff for
BS03838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-alpha-RA | 62..980 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:44 Download gff for
BS03838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-alpha-RA | 42..974 | 8..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:20 Download gff for
BS03838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-alpha-RA | 62..980 | 17..935 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:20 Download gff for
BS03838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29935137..29935291 | 365..519 | 100 | <- | Minus |
3R | 29935359..29935570 | 153..364 | 100 | <- | Minus |
3R | 29935633..29935734 | 51..152 | 100 | <- | Minus |
3R | 29935794..29935827 | 17..50 | 100 | | Minus |
3R | 29934607..29934751 | 791..935 | 100 | <- | Minus |
3R | 29934811..29935081 | 520..790 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:32 Download gff for
BS03838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25760329..25760473 | 791..935 | 100 | <- | Minus |
arm_3R | 25760533..25760803 | 520..790 | 100 | <- | Minus |
arm_3R | 25760859..25761013 | 365..519 | 100 | <- | Minus |
arm_3R | 25761081..25761292 | 153..364 | 100 | <- | Minus |
arm_3R | 25761355..25761456 | 51..152 | 100 | <- | Minus |
arm_3R | 25761516..25761549 | 17..50 | 100 | | Minus |
BS03838.pep Sequence
Translation from 16 to 936
> BS03838.pep
MPQITENGQDFDVVKYFLQLLDEDKDLSSGIAAIRTLLMILEKKQFGTIH
ILHTTMREAVAAMRNTDLSIAAIVSAGELFCRFITLSLDDKHMEECRQIM
LNRGKIFLTKLLNSRQVIAQQAQRFITDGCRILTHSRSRVVLKALITASQ
NKKSFHVYVTQGGTGNSGEEMVKDLHAAGIDCTLILDSATGYVMESVDFV
LVGAEAVVESGGIINRIGTYTMGLCAREMKKPFYVLAESFKFSRLYPLNQ
RDLPNEYKYSRKHLNDVSKVHPLVDYTPPVYITLLFTDLGRLTPSAVSDE
LIKLYM*
BS03838.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF2B-alpha-PA | 306 | CG7883-PA | 1..306 | 1..306 | 1551 | 100 | Plus |
eIF2B-delta-PD | 576 | CG10315-PD | 299..564 | 43..297 | 211 | 26.9 | Plus |
eIF2B-delta-PB | 576 | CG10315-PB | 299..564 | 43..297 | 211 | 26.9 | Plus |
eIF2B-delta-PC | 576 | CG10315-PC | 299..564 | 43..297 | 211 | 26.9 | Plus |
eIF2B-delta-PA | 626 | CG10315-PA | 349..614 | 43..297 | 211 | 26.9 | Plus |