Clone BS03838 Report

Search the DGRC for BS03838

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:38
Vector:pDNR-Dual
Associated Gene/TranscripteIF2B-alpha-RA
Protein status:BS03838.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03838.3prime Sequence

938 bp (828 high quality bases) assembled on 2005-12-01

> BS03838.3prime
ATGGTCTAGAAAGCTTTTACATGTAGAGTTTGATCAACTCGTCGCTTACG
GCCGAGGGTGTTAGTCTTCCGAGGTCGGTGAAGAGCAGGGTGATGTAGAC
GGGTGGCGTATAGTCGACCAGCGGGTGCACTTTGCTTACATCGTTTAGGT
GTTTGCGGGAGTACTTGTACTCGTTTGGCAGATCGCGCTGATTGAGTGGA
TACAGACGGCTGAACTTGAAGCTTTCGGCCAGAACGTAGAAAGGTTTCTT
CATCTCACGGGCGCACAGACCCATGGTGTAGGTGCCAATGCGGTTGATAA
TGCCACCACTCTCCACCACGGCTTCAGCCCCCACAAGCACAAAGTCCACC
GATTCCATAACATAGCCGGTGGCTGAGTCCAGAATGAGCGTGCAATCGAT
GCCGGCCGCATGCAGATCCTTAACCATCTCTTCGCCAGAGTTTCCCGTGC
CGCCCTGCGTCACATAAACGTGGAAGGACTTTTTGTTCTGCGAGGCTGTA
ATCAGCGCCTTGAGGACCACCCGGGATCGGGAGTGCGTCAATATACGGCA
GCCATCGGTAATGAACCTTTGGGCCTGCTGGGCAATCACCTGCCGGGAAT
TGAGCAACTTGGTGAGGAAGATTTTTCCGCGATTCAACATAATCTGCCGG
CACTCCTCCATGTGCTTGTCGTCCAGACTGAGGGTGATGAACCTGCAAAA
GAGCTCTCCGGCAGAAACAATGGCTGCTATAGACAAATCCGTATTCCGCA
TGGCAGCCACCGCTTCCCTCATGGTTGTGTGTAGAATATGAATGGTTCCA
AATTGTTTCTTTTCCAGGATCATTAGCAGAGTCCTGATAGCCGCAATGCC
GGAGGACAGATCCTTGTCCTCGTCCAGGAGCTGCAGGAAGTATTTGACCA
CATCAAAATCCTGGCCATTTTCCGTAATTTTGCGGCAT

BS03838.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7883-PA 921 eIF2B-alpha-RA 8..921 930..17 4570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-alpha-RA 1005 CG7883-RA 62..982 938..17 4585 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29934811..29935082 164..435 1360 100 Plus
3R 32079331 3R 29935357..29935570 588..801 1070 100 Plus
3R 32079331 3R 29935137..29935294 435..592 790 100 Plus
3R 32079331 3R 29934605..29934753 17..165 745 100 Plus
3R 32079331 3R 29935633..29935735 802..904 515 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:56:23 has no hits.

BS03838.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:33:58 Download gff for BS03838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7883-PA 1..921 17..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:03 Download gff for BS03838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7883-PA 1..921 17..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:30 Download gff for BS03838.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-alpha-RA 62..986 13..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:41:19 Download gff for BS03838.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-alpha-RA 62..986 13..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:41:19 Download gff for BS03838.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29934601..29934751 13..163 98 <- Plus
3R 29934811..29935081 164..434 100 <- Plus
3R 29935137..29935291 435..589 100 <- Plus
3R 29935359..29935570 590..801 100 <- Plus
3R 29935633..29935734 802..903 100 <- Plus
3R 29935794..29935827 904..938 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:30 Download gff for BS03838.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25760859..25761013 435..589 100 <- Plus
arm_3R 25760323..25760473 13..163 98 <- Plus
arm_3R 25760533..25760803 164..434 100 <- Plus
arm_3R 25761081..25761292 590..801 100 <- Plus
arm_3R 25761355..25761456 802..903 100 <- Plus
arm_3R 25761516..25761549 904..938 97   Plus

BS03838.5prime Sequence

884 bp (725 high quality bases) assembled on 2005-12-01

> BS03838.5prime
GAAGTTATCAGTCGACATGCCGCAAATTACGGAAAATGGCCAGGATTTTG
ATGTGGTCAAATACTTCCTGCAGCTCCTGGACGAGGACAAGGATCTGTCC
TCCGGCATTGCGGCTATCAGGACTCTGCTAATGATCCTGGAAAAGAAACA
ATTTGGAACCATTCATATTCTACACACAACCATGAGGGAAGCGGTGGCTG
CCATGCGGAATACGGATTTGTCTATAGCAGCCATTGTTTCTGCCGGAGAG
CTCTTTTGCAGGTTCATCACCCTCAGTCTGGACGACAAGCACATGGAGGA
GTGCCGGCAGATTATGTTGAATCGCGGAAAAATCTTCCTCACCAAGTTGC
TCAATTCCCGGCAGGTGATTGCCCAGCAGGCCCAAAGGTTCATTACCGAT
GGCTGCCGTATATTGACGCACTCCCGATCCCGGGTGGTCCTCAAGGCGCT
GATTACAGCCTCGCAGAACAAAAAGTCCTTCCACGTTTATGTGACGCAGG
GCGGCACGGGAAACTCTGGCGAAGAGATGGTTAAGGATCTGCATGCGGCC
GGCATCGATTGCACGCTCATTCTGGACTCAGCCACCGGCTATGTTATGGA
ATCGGTGGACTTTGTGCTTGTGGGGGCTGAAGCCGTGGTGGAGAGTGGTG
GCATTATCAACCGCATTGGCACCTACACCATGGGTCTGTGCGCCCGTGAG
ATGAAGAAACCTTTCTACGTTCTGGCCGAAAGCTTCAAGTTCAGCCGTCT
GTATCCACTCAATCAGCGCGATCTGCCAAACGAGTACAAGTACTCCCGCA
AACACCTAAACGATGTAAGCAAAGTGCACCCGCTGGTCGACTATACGCCA
CCCGTCTACATCACCCTGCTCTTCACCGACCTCG

BS03838.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7883-PA 921 eIF2B-alpha-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-alpha-RA 1005 CG7883-RA 62..929 17..884 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29934811..29935082 790..519 1360 100 Minus
3R 32079331 3R 29935357..29935570 366..153 1070 100 Minus
3R 32079331 3R 29935137..29935294 519..362 790 100 Minus
3R 32079331 3R 29935633..29935735 152..50 515 100 Minus
3R 32079331 3R 29934658..29934753 884..789 480 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:44:54 has no hits.

BS03838.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:00 Download gff for BS03838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7883-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:04 Download gff for BS03838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7883-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:15 Download gff for BS03838.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-alpha-RA 54..929 8..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:27 Download gff for BS03838.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-alpha-RA 54..929 8..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:27 Download gff for BS03838.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29935359..29935570 153..364 100 <- Minus
3R 29935633..29935734 51..152 100 <- Minus
3R 29934658..29934751 791..884 100 <- Minus
3R 29934811..29935081 520..790 100 <- Minus
3R 29935137..29935291 365..519 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:15 Download gff for BS03838.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25760380..25760473 791..884 100 <- Minus
arm_3R 25760533..25760803 520..790 100 <- Minus
arm_3R 25760859..25761013 365..519 100 <- Minus
arm_3R 25761081..25761292 153..364 100 <- Minus
arm_3R 25761355..25761456 51..152 100 <- Minus

BS03838.complete Sequence

953 bp (953 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634787

> BS03838.complete
GAAGTTATCAGTCGACATGCCGCAAATTACGGAAAATGGCCAGGATTTTG
ATGTGGTCAAATACTTCCTGCAGCTCCTGGACGAGGACAAGGATCTGTCC
TCCGGCATTGCGGCTATCAGGACTCTGCTAATGATCCTGGAAAAGAAACA
ATTTGGAACCATTCATATTCTACACACAACCATGAGGGAAGCGGTGGCTG
CCATGCGGAATACGGATTTGTCTATAGCAGCCATTGTTTCTGCCGGAGAG
CTCTTTTGCAGGTTCATCACCCTCAGTCTGGACGACAAGCACATGGAGGA
GTGCCGGCAGATTATGTTGAATCGCGGAAAAATCTTCCTCACCAAGTTGC
TCAATTCCCGGCAGGTGATTGCCCAGCAGGCCCAAAGGTTCATTACCGAT
GGCTGCCGTATATTGACGCACTCCCGATCCCGGGTGGTCCTCAAGGCGCT
GATTACAGCCTCGCAGAACAAAAAGTCCTTCCACGTTTATGTGACGCAGG
GCGGCACGGGAAACTCTGGCGAAGAGATGGTTAAGGATCTGCATGCGGCC
GGCATCGATTGCACGCTCATTCTGGACTCAGCCACCGGCTATGTTATGGA
ATCGGTGGACTTTGTGCTTGTGGGGGCTGAAGCCGTGGTGGAGAGTGGTG
GCATTATCAACCGCATTGGCACCTACACCATGGGTCTGTGCGCCCGTGAG
ATGAAGAAACCTTTCTACGTTCTGGCCGAAAGCTTCAAGTTCAGCCGTCT
GTATCCACTCAATCAGCGCGATCTGCCAAACGAGTACAAGTACTCCCGCA
AACACCTAAACGATGTAAGCAAAGTGCACCCGCTGGTCGACTATACGCCA
CCCGTCTACATCACCCTGCTCTTCACCGACCTCGGAAGACTAACACCCTC
GGCCGTAAGCGACGAGTTGATCAAACTCTACATGTAAAAGCTTTCTAGAC
CAT

BS03838.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-alpha-RA 921 CG7883-PA 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-alpha-RA 1005 CG7883-RA 62..982 17..937 4605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29934811..29935082 790..519 1360 100 Minus
3R 32079331 3R 29935357..29935570 366..153 1070 100 Minus
3R 32079331 3R 29935137..29935294 519..362 790 100 Minus
3R 32079331 3R 29934605..29934753 937..789 745 100 Minus
3R 32079331 3R 29935633..29935735 152..50 515 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:53:13 has no hits.

BS03838.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:44 Download gff for BS03838.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-alpha-RA 1..921 17..937 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:34 Download gff for BS03838.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-alpha-RA 42..974 8..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:32 Download gff for BS03838.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-alpha-RA 62..980 17..935 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:44 Download gff for BS03838.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-alpha-RA 42..974 8..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:20 Download gff for BS03838.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-alpha-RA 62..980 17..935 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:20 Download gff for BS03838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29935137..29935291 365..519 100 <- Minus
3R 29935359..29935570 153..364 100 <- Minus
3R 29935633..29935734 51..152 100 <- Minus
3R 29935794..29935827 17..50 100   Minus
3R 29934607..29934751 791..935 100 <- Minus
3R 29934811..29935081 520..790 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:32 Download gff for BS03838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25760329..25760473 791..935 100 <- Minus
arm_3R 25760533..25760803 520..790 100 <- Minus
arm_3R 25760859..25761013 365..519 100 <- Minus
arm_3R 25761081..25761292 153..364 100 <- Minus
arm_3R 25761355..25761456 51..152 100 <- Minus
arm_3R 25761516..25761549 17..50 100   Minus

BS03838.pep Sequence

Translation from 16 to 936

> BS03838.pep
MPQITENGQDFDVVKYFLQLLDEDKDLSSGIAAIRTLLMILEKKQFGTIH
ILHTTMREAVAAMRNTDLSIAAIVSAGELFCRFITLSLDDKHMEECRQIM
LNRGKIFLTKLLNSRQVIAQQAQRFITDGCRILTHSRSRVVLKALITASQ
NKKSFHVYVTQGGTGNSGEEMVKDLHAAGIDCTLILDSATGYVMESVDFV
LVGAEAVVESGGIINRIGTYTMGLCAREMKKPFYVLAESFKFSRLYPLNQ
RDLPNEYKYSRKHLNDVSKVHPLVDYTPPVYITLLFTDLGRLTPSAVSDE
LIKLYM*

BS03838.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-alpha-PA 306 CG7883-PA 1..306 1..306 1551 100 Plus
eIF2B-delta-PD 576 CG10315-PD 299..564 43..297 211 26.9 Plus
eIF2B-delta-PB 576 CG10315-PB 299..564 43..297 211 26.9 Plus
eIF2B-delta-PC 576 CG10315-PC 299..564 43..297 211 26.9 Plus
eIF2B-delta-PA 626 CG10315-PA 349..614 43..297 211 26.9 Plus