Clone Sequence Records
BS03840.5prime Sequence
610 bp (609 high quality bases) assembled on 2005-12-01
> BS03840.5prime
GAAGTTATCAGTCGACATGCTGAAGCGCGATCTGCAGAAAATCACACTCA
AGCTGTCCGATCTCAAGGACTATGAGGTTGCCCGCCAAAAGAACAAGTTA
AAGGGCGCCCCGCGACCTAGGCTTTCTCAGGACGCCCTCCCCGGAGACGA
CGCCTCCACTTCGGGAACAACGGCAAGTTGCAGTTCCAACACGGAAACGG
CCACGGAAACCGCATCGGGATCCGGATCAGGGTCTGGATCGGGCTCGGGT
TCTGGGTCCGGGTCGTACATTACGGGAATGGGCTACCGTTCGGAGACACC
CTCCTCCGCATCGTACACCACGTCGACGACCCCGACTCCGGCCACTCAGG
AGGAGATACTGAGACCCTCGTCCGCCGTCACGGCCACCACAACCACTGGC
ACCACTAATTCCGGCTCCACGGATGACGTGAGCGTGGCGGCCGTAGTGGA
TGACACGGATACCATTGACGAAATCAGCGATGACAACTGGGTGGACCTGA
ATGCGGACACCAACGATACCGTTGATACCCAGCCGGAGGAGCAGGACCAA
CTGCAAGAGGTGGAGGAGGAGGATGGGGCTAGGGGGAGGAGTGTAAAAGC
TTTCTAGACC
BS03840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-PA | 579 | CG3457-RA | 1..569 | 17..585 | 2845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-RB | 1100 | CG3457-RB | 73..656 | 12..596 | 2885 | 99.7 | Plus |
| CG3457-RA | 891 | CG3457-RA | 73..656 | 12..596 | 2885 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2187892..2188475 | 12..596 | 2860 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:20:40 has no hits.
BS03840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:03 Download gff for
BS03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-PA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:10 Download gff for
BS03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-PA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:31:50 Download gff for
BS03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 73..660 | 12..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:33 Download gff for
BS03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 73..660 | 12..601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:33 Download gff for
BS03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2187892..2188479 | 12..601 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:31:50 Download gff for
BS03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2081925..2082512 | 12..601 | 99 | | Plus |
BS03840.3prime Sequence
609 bp (608 high quality bases) assembled on 2005-12-01
> BS03840.3prime
ATGGTCTAGAAAGCTTTTACACTCCTCCCCTAGCCCCATCCTCCTCCTCC
ACCTCTTGCAGTTGGTCCTGCTCCTCCGGCTGGGTATCAACGGTATCGTT
GGTGTCCGCATTCAGGTCCACCCAGTTGTCATCGCTGATTTCGTCAATGG
TATCCGTGTCATCCACTACGGCCGCCACGCTCACGTCATCCGTGGAGCCG
GAATTAGTGGTGCCAGTGGTTGTGGTGGCCGTGACGGCGGACGAGGGTCT
CAGTATCTCCTCCTGAGTGGCCGGAGTCGGGGTCGTCGACGTGGTGTACG
ATGCGGAGGAGGGTGTCTCCGAACGGTAGCCCATTCCCGTAATGTACGAC
CCGGACCCAGAACCCGAGCCCGATCCAGACCCTGATCCGGATCCCGATGC
GGTTTCCGTGGCCGTTTCCGTGTTGGAACTGCAACTTGCCGTTGTTCCCG
AAGTGGAGGCGTCGTCTCCGGGGAGGGCGTCCTGAGAAAGCCTAGGTCGC
GGGGCGCCCTTTAACTTGTTCTTTTGGCGGGCAACCTCATAGTCCTTGAG
ATCGGACAGCTTGAGTGTGATTTTCTGCAGATCGCGCTTCAGCATGTCGA
CTGATAACT
BS03840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-PA | 579 | CG3457-RA | 1..579 | 595..17 | 2895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-RB | 1100 | CG3457-RB | 73..656 | 600..17 | 2905 | 99.8 | Minus |
| CG3457-RA | 891 | CG3457-RA | 73..656 | 600..17 | 2905 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2187892..2188475 | 600..17 | 2905 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-01-30 15:57:16 has no hits.
BS03840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:03 Download gff for
BS03840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-PA | 1..579 | 17..595 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:09 Download gff for
BS03840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-PA | 1..579 | 17..595 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:19:00 Download gff for
BS03840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 73..660 | 12..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:38 Download gff for
BS03840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 73..660 | 12..600 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:38 Download gff for
BS03840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2187892..2188479 | 12..600 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:19:00 Download gff for
BS03840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2081925..2082512 | 12..600 | 99 | | Minus |
BS03840.complete Sequence
611 bp (611 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634788
> BS03840.complete
GAAGTTATCAGTCGACATGCTGAAGCGCGATCTGCAGAAAATCACACTCA
AGCTGTCCGATCTCAAGGACTATGAGGTTGCCCGCCAAAAGAACAAGTTA
AAGGGCGCCCCGCGACCTAGGCTTTCTCAGGACGCCCTCCCCGGAGACGA
CGCCTCCACTTCGGGAACAACGGCAAGTTGCAGTTCCAACACGGAAACGG
CCACGGAAACCGCATCGGGATCCGGATCAGGGTCTGGATCGGGCTCGGGT
TCTGGGTCCGGGTCGTACATTACGGGAATGGGCTACCGTTCGGAGACACC
CTCCTCCGCATCGTACACCACGTCGACGACCCCGACTCCGGCCACTCAGG
AGGAGATACTGAGACCCTCGTCCGCCGTCACGGCCACCACAACCACTGGC
ACCACTAATTCCGGCTCCACGGATGACGTGAGCGTGGCGGCCGTAGTGGA
TGACACGGATACCATTGACGAAATCAGCGATGACAACTGGGTGGACCTGA
ATGCGGACACCAACGATACCGTTGATACCCAGCCGGAGGAGCAGGACCAA
CTGCAAGAGGTGGAGGAGGAGGATGGGGCTAGGGGAGGAGTGTAAAAGCT
TTCTAGACCAT
BS03840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-RB | 579 | CG3457-PB | 1..579 | 17..595 | 2895 | 100 | Plus |
| CG3457-RA | 579 | CG3457-PA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-RB | 1100 | CG3457-RB | 73..656 | 12..595 | 2905 | 99.8 | Plus |
| CG3457-RA | 891 | CG3457-RA | 73..656 | 12..595 | 2905 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2187892..2188475 | 12..595 | 2905 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:18:05 has no hits.
BS03840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:46 Download gff for
BS03840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:36 Download gff for
BS03840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 71..658 | 12..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:44 Download gff for
BS03840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 78..654 | 17..593 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:46 Download gff for
BS03840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 71..658 | 12..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:34 Download gff for
BS03840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 78..654 | 17..593 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:34 Download gff for
BS03840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2187897..2188473 | 17..593 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:44 Download gff for
BS03840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2081930..2082506 | 17..593 | 100 | | Plus |
BS03840.pep Sequence
Translation from 16 to 594
> BS03840.pep
MLKRDLQKITLKLSDLKDYEVARQKNKLKGAPRPRLSQDALPGDDASTSG
TTASCSSNTETATETASGSGSGSGSGSGSGSGSYITGMGYRSETPSSASY
TTSTTPTPATQEEILRPSSAVTATTTTGTTNSGSTDDVSVAAVVDDTDTI
DEISDDNWVDLNADTNDTVDTQPEEQDQLQEVEEEDGARGGV*
BS03840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-PB | 192 | CG3457-PB | 1..192 | 1..192 | 970 | 100 | Plus |
| CG3457-PA | 192 | CG3457-PA | 1..192 | 1..192 | 970 | 100 | Plus |
