Clone BS03842 Report

Search the DGRC for BS03842

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:42
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)06496-RA
Protein status:BS03842.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03842.5prime Sequence

609 bp (608 high quality bases) assembled on 2005-11-29

> BS03842.5prime
GAAGTTATCAGTCGACATGGAGGCACTGGACATTCTGGAGAAGCGCATCG
ATGCCCTGACACGAGTCCTGGGTCCGGTCCAGGACTCTGAGGTGGGCGAG
GGCGTGGTCGACGCCCTGTGCTCGGCACACGCCATCCTGGGCGAAGCAAC
CACAGGAAGTGCTGCACTGCAGCAGTGCGTGAAGAGATCTGACGAGCTGG
AGAAGTACCTGGACCCCAACTTCCTGGAGGAGCACCAGCAGGTGCGCTCC
AAGGAGGTGTACCTGCAAGCCGTGGCCCCCGAGCTGCACACGCAGGCCGA
GCAGCTGGAGAGGATTAAGCAGCTGGAACCGGCCCTGGGCGCGGAGTACT
TCCGCAGCATTCCCGCCGAGTGTCTGGAGCAGCTAAAGGGCATAACGCAG
AACAACGGGGAGTACGCGCAGCAGAGCGAACTTATCGAGGAGAGTCTGGT
CCTGGCCATGAAGCGATATGGCGAGATCCAGGCGGGACTGCTGAGCTCCC
TGGATGCCATGAGCGAGCGCTTGGACCAGGTAGAGGAGCGCATGGAGCAG
AGGAAGCGTGCAGAGTTGAGCAAGGATGTGCCGCCCAAGGATTGAAAGCT
TTCTAGACC

BS03842.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9893-PA 579 l(2)06496-RA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)06496-RB 1086 CG9893-RB 84..662 17..595 2895 100 Plus
l(2)06496-RA 1174 CG9893-RA 84..662 17..595 2895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23061932..23062510 595..17 2895 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:25:52 has no hits.

BS03842.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:06 Download gff for BS03842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9893-PA 1..579 17..595 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:13 Download gff for BS03842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9893-PA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:42:12 Download gff for BS03842.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)06496-RA 74..664 8..599 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:32 Download gff for BS03842.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)06496-RA 74..664 8..599 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:32 Download gff for BS03842.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23061930..23062520 8..599 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:42:12 Download gff for BS03842.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18949453..18950043 8..599 98   Minus

BS03842.3prime Sequence

609 bp (608 high quality bases) assembled on 2005-12-01

> BS03842.3prime
ATGGTCTAGAAAGCTTTCAATCCTTGGGCGGCACATCCTTGCTCAACTCT
GCACGCTTCCTCTGCTCCATGCGCTCCTCTACCTGGTCCAAGCGCTCGCT
CATGGCATCCAGGGAGCTCAGCAGTCCCGCCTGGATCTCGCCATATCGCT
TCATGGCCAGGACCAGACTCTCCTCGATAAGTTCGCTCTGCTGCGCGTAC
TCCCCGTTGTTCTGCGTTATGCCCTTTAGCTGCTCCAGACACTCGGCGGG
AATGCTGCGGAAGTACTCCGCGCCCAGGGCCGGTTCCAGCTGCTTAATCC
TCTCCAGCTGCTCGGCCTGCGTGTGCAGCTCGGGGGCCACGGCTTGCAGG
TACACCTCCTTGGAGCGCACCTGCTGGTGCTCCTCCAGGAAGTTGGGGTC
CAGGTACTTCTCCAGCTCGTCAGATCTCTTCACGCACTGCTGCAGTGCAG
CACTTCCTGTGGTTGCTTCGCCCAGGATGGCGTGTGCCGAGCACAGGGCG
TCGACCACGCCCTCGCCCACCTCAGAGTCCTGGACCGGACCCAGGACTCG
TGTCAGGGCATCGATGCGCTTCTCCAGAATGTCCAGTGCCTCCATGTCGA
CTGATAACT

BS03842.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9893-PA 579 l(2)06496-RA 1..579 595..17 2895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)06496-RB 1086 CG9893-RB 84..662 595..17 2895 100 Minus
l(2)06496-RA 1174 CG9893-RA 84..662 595..17 2895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23061932..23062510 17..595 2895 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:58:43 has no hits.

BS03842.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:05 Download gff for BS03842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9893-PA 1..579 17..595 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:12 Download gff for BS03842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9893-PA 1..579 17..595 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:10:27 Download gff for BS03842.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)06496-RA 74..664 13..604 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:13 Download gff for BS03842.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)06496-RA 74..664 13..604 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:13 Download gff for BS03842.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23061930..23062520 13..604 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:10:27 Download gff for BS03842.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18949453..18950043 13..604 98   Plus

BS03842.complete Sequence

611 bp (611 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634789

> BS03842.complete
GAAGTTATCAGTCGACATGGAGGCACTGGACATTCTGGAGAAGCGCATCG
ATGCCCTGACACGAGTCCTGGGTCCGGTCCAGGACTCTGAGGTGGGCGAG
GGCGTGGTCGACGCCCTGTGCTCGGCACACGCCATCCTGGGCGAAGCAAC
CACAGGAAGTGCTGCACTGCAGCAGTGCGTGAAGAGATCTGACGAGCTGG
AGAAGTACCTGGACCCCAACTTCCTGGAGGAGCACCAGCAGGTGCGCTCC
AAGGAGGTGTACCTGCAAGCCGTGGCCCCCGAGCTGCACACGCAGGCCGA
GCAGCTGGAGAGGATTAAGCAGCTGGAACCGGCCCTGGGCGCGGAGTACT
TCCGCAGCATTCCCGCCGAGTGTCTGGAGCAGCTAAAGGGCATAACGCAG
AACAACGGGGAGTACGCGCAGCAGAGCGAACTTATCGAGGAGAGTCTGGT
CCTGGCCATGAAGCGATATGGCGAGATCCAGGCGGGACTGCTGAGCTCCC
TGGATGCCATGAGCGAGCGCTTGGACCAGGTAGAGGAGCGCATGGAGCAG
AGGAAGCGTGCAGAGTTGAGCAAGGATGTGCCGCCCAAGGATTGAAAGCT
TTCTAGACCAT

BS03842.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)06496-RB 579 CG9893-PB 1..579 17..595 2895 100 Plus
l(2)06496-RA 579 CG9893-PA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)06496-RB 1086 CG9893-RB 84..662 17..595 2895 100 Plus
l(2)06496-RA 1174 CG9893-RA 84..662 17..595 2895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23061932..23062510 595..17 2895 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:07:27 has no hits.

BS03842.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:32 Download gff for BS03842.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)06496-RA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:16 Download gff for BS03842.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)06496-RA 83..673 8..599 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:14 Download gff for BS03842.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)06496-RA 84..661 17..594 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:33 Download gff for BS03842.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)06496-RA 83..673 8..599 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:40 Download gff for BS03842.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)06496-RA 84..661 17..594 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:40 Download gff for BS03842.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23061933..23062510 17..594 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:14 Download gff for BS03842.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18949456..18950033 17..594 100   Minus

BS03842.pep Sequence

Translation from 16 to 594

> BS03842.pep
MEALDILEKRIDALTRVLGPVQDSEVGEGVVDALCSAHAILGEATTGSAA
LQQCVKRSDELEKYLDPNFLEEHQQVRSKEVYLQAVAPELHTQAEQLERI
KQLEPALGAEYFRSIPAECLEQLKGITQNNGEYAQQSELIEESLVLAMKR
YGEIQAGLLSSLDAMSERLDQVEERMEQRKRAELSKDVPPKD*

BS03842.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)06496-PB 192 CG9893-PB 1..192 1..192 954 100 Plus
l(2)06496-PA 192 CG9893-PA 1..192 1..192 954 100 Plus