Clone Sequence Records
BS03843.3prime Sequence
642 bp (641 high quality bases) assembled on 2005-12-01
> BS03843.3prime
ATGGTCTAGAAAGCTTTTAGTGACCCGCGGTGGCGGCCTTGGCAGCGATC
TCGTCCTCCTTAGCATGCAGGGCGATGAGCTCCTGCTTCTTGGTGGCAAT
ACGCTCCTCGCGGCGCTTGCGGGCCTCACGCACCTTCTGTCGGCGAGCCT
CGGCCTGATCAGCCAGCATCTTGCTGCGCTGCTTCTCAGCCTTCTTCTTG
TGGATGTACTCCATGAGGACGCGCTTGTTCTTGAATACGTTACCCTTGCA
CTTCATGTACAGGTCGTGGTACAGGTGCCTGTCAATCTTCTTGCTGTCGC
GGTACTTCTTCAACAGGCGGCGCAGAACGCGCTGGCGCTGCATCCACAGC
AGCTTGGTAGGCATGCGGGCGTTCGCAGTACCCTTACGCTTTCCGAATCC
GCAGTGACGTCCCTTGCGGCGGGCCTCGGTGTTTTTGCGCACACGGTAAC
GGGAGTGGACCACGACGGGCTTCTTGATGATCAGACCATCCTTGATAAGC
TTGCGAATGTTCTGACGCGAGTTTGTGTTAGCGATCTCGTTGATTTCATT
GGGATCCAACCAGACCTTCTTCTTGCCGCATCGCAGCACGGAGGCTGCGA
GCCTCTTCTGGAGCTTTAGAGAACTCATGTCGACTGATAACT
BS03843.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2746-PA | 612 | RpL19-RA | 1..612 | 628..17 | 3060 | 100 | Minus |
| CG2746-PB | 612 | RpL19-RB | 1..612 | 628..17 | 3060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-RB | 755 | CG2746-RB | 36..648 | 629..17 | 3065 | 100 | Minus |
| RpL19-RA | 1361 | CG2746-RA | 74..686 | 629..17 | 3065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24968552..24969051 | 17..516 | 2500 | 100 | Plus |
| 2R | 25286936 | 2R | 24969116..24969226 | 515..625 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:59:39 has no hits.
BS03843.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:07 Download gff for
BS03843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-PA | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:15 Download gff for
BS03843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2746-PB | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:33 Download gff for
BS03843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 9..637 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:36:27 Download gff for
BS03843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 9..637 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:36:27 Download gff for
BS03843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24969118..24969224 | 517..623 | 100 | <- | Plus |
| 2R | 24968546..24969051 | 9..516 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:33 Download gff for
BS03843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20856069..20856574 | 9..516 | 99 | <- | Plus |
| arm_2R | 20856641..20856747 | 517..623 | 100 | <- | Plus |
BS03843.5prime Sequence
642 bp (641 high quality bases) assembled on 2005-11-29
> BS03843.5prime
GAAGTTATCAGTCGACATGAGTTCTCTAAAGCTCCAGAAGAGGCTCGCAG
CCTCCGTGCTGCGATGCGGCAAGAAGAAGGTCTGGTTGGATCCCAATGAA
ATCAACGAGATCGCTAACACAAACTCGCGTCAGAACATTCGCAAGCTTAT
CAAGGATGGTCTGATCATCAAGAAGCCCGTCGTGGTCCACTCCCGTTACC
GTGTGCGCAAAAACACCGAGGCCCGCCGCAAGGGACGTCACTGCGGATTC
GGAAAGCGTAAGGGTACTGCGAACGCCCGCATGCCTACCAAGCTGCTGTG
GATGCAGCGCCAGCGCGTTCTGCGCCGCCTGTTGAAGAAGTACCGCGACA
GCAAGAAGATTGACAGGCACCTGTACCACGACCTGTACATGAAGTGCAAG
GGTAACGTATTCAAGAACAAGCGCGTCCTCATGGAGTACATCCACAAGAA
GAAGGCTGAGAAGCAGCGCAGCAAGATGCTGGCTGATCAGGCCGAGGCTC
GCCGACAGAAGGTGCGTGAGGCCCGCAAGCGCCGCGAGGAGCGTATTGCC
ACCAAGAAGCAGGAGCTCATCGCCCTGCATGCTAAGGAGGACGAGATCGC
TGCCAAGGCCGCCACCGCGGGTCACTAAAAGCTTTCTAGACC
BS03843.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2746-PA | 612 | RpL19-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
| CG2746-PB | 612 | RpL19-RB | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-RB | 755 | CG2746-RB | 36..648 | 16..628 | 3065 | 100 | Plus |
| RpL19-RA | 1361 | CG2746-RA | 74..686 | 16..628 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24968552..24969051 | 628..129 | 2500 | 100 | Minus |
| 2R | 25286936 | 2R | 24969116..24969226 | 130..20 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:16:20 has no hits.
BS03843.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:08 Download gff for
BS03843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-PA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:16 Download gff for
BS03843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2746-PB | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:44:17 Download gff for
BS03843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 8..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:44 Download gff for
BS03843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 8..636 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:44 Download gff for
BS03843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24968546..24969051 | 129..636 | 99 | <- | Minus |
| 2R | 24969118..24969224 | 22..128 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:44:17 Download gff for
BS03843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20856069..20856574 | 129..636 | 99 | <- | Minus |
| arm_2R | 20856641..20856747 | 22..128 | 100 | <- | Minus |
BS03843.complete Sequence
644 bp (644 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634790
> BS03843.complete
GAAGTTATCAGTCGACATGAGTTCTCTAAAGCTCCAGAAGAGGCTCGCAG
CCTCCGTGCTGCGATGCGGCAAGAAGAAGGTCTGGTTGGATCCCAATGAA
ATCAACGAGATCGCTAACACAAACTCGCGTCAGAACATTCGCAAGCTTAT
CAAGGATGGTCTGATCATCAAGAAGCCCGTCGTGGTCCACTCCCGTTACC
GTGTGCGCAAAAACACCGAGGCCCGCCGCAAGGGACGTCACTGCGGATTC
GGAAAGCGTAAGGGTACTGCGAACGCCCGCATGCCTACCAAGCTGCTGTG
GATGCAGCGCCAGCGCGTTCTGCGCCGCCTGTTGAAGAAGTACCGCGACA
GCAAGAAGATTGACAGGCACCTGTACCACGACCTGTACATGAAGTGCAAG
GGTAACGTATTCAAGAACAAGCGCGTCCTCATGGAGTACATCCACAAGAA
GAAGGCTGAGAAGCAGCGCAGCAAGATGCTGGCTGATCAGGCCGAGGCTC
GCCGACAGAAGGTGCGTGAGGCCCGCAAGCGCCGCGAGGAGCGTATTGCC
ACCAAGAAGCAGGAGCTCATCGCCCTGCATGCTAAGGAGGACGAGATCGC
TGCCAAGGCCGCCACCGCGGGTCACTAAAAGCTTTCTAGACCAT
BS03843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-RB | 612 | CG2746-PB | 1..612 | 17..628 | 3060 | 100 | Plus |
| RpL19-RA | 612 | CG2746-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-RB | 755 | CG2746-RB | 36..648 | 16..628 | 3065 | 100 | Plus |
| RpL19-RA | 1361 | CG2746-RA | 74..686 | 16..628 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24968552..24969051 | 628..129 | 2500 | 100 | Minus |
| 2R | 25286936 | 2R | 24969116..24969226 | 130..20 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:22:09 has no hits.
BS03843.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:43 Download gff for
BS03843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RB | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:36 Download gff for
BS03843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RB | 25..650 | 8..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:09 Download gff for
BS03843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 75..684 | 17..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:44 Download gff for
BS03843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RB | 25..650 | 8..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:02 Download gff for
BS03843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 75..684 | 17..626 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:02 Download gff for
BS03843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24968554..24969051 | 129..626 | 100 | <- | Minus |
| 2R | 24969118..24969229 | 17..128 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:09 Download gff for
BS03843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20856077..20856574 | 129..626 | 100 | <- | Minus |
| arm_2R | 20856641..20856752 | 17..128 | 98 | | Minus |
BS03843.pep Sequence
Translation from 16 to 627
> BS03843.pep
MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLI
IKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQR
VLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQ
RSKMLADQAEARRQKVREARKRREERIATKKQELIALHAKEDEIAAKAAT
AGH*
BS03843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-PB | 203 | CG2746-PB | 1..203 | 1..203 | 1037 | 100 | Plus |
| RpL19-PA | 203 | CG2746-PA | 1..203 | 1..203 | 1037 | 100 | Plus |
