Clone BS03845 Report

Search the DGRC for BS03845

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptRpL11-RA
Protein status:BS03845.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03845.3prime Sequence

585 bp (584 high quality bases) assembled on 2005-12-01

> BS03845.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGGTGTTCAAGATGATACCATCGTAT
TTCTGCTGGAACCACTTCATGGCATCCTCCTTGGTGAGGCGGTGCTGGAA
GCCGACAGTGCCGGACTTGCGCTTCCTGTGGTTCACATTGTAGCCAGGGC
GGCCGAGGACGACGTAGAAGTCCAGACCATAGATACCGATGGAGGGATCG
TACTTGATGCCCAGATCGATGTGTTCCTGGATGCCGAAACCGAAGTTGCC
GGTGGAGGAGAAGTTCTCCCGACGCAGCTCGTACTCGCGCACCTTCAGGC
CACGCTCCAGAATCTCCTCAGCCTTGGCGCCGCGCACCGTGCAGTGGACA
GCGATCTTCTCGTTACGGCGAATACCGAACGAACGGACCGTGTAGCGGGC
CTTGGAGAACACTGGCTGCTGACCAGTCAGCTGCTCCAGCACCTTGGCGG
CACGGGTCAGCCTGTCACCGGACTCGCCCACGCAGATGTTCAGGCAGAGT
TTGCGGATGTGCAGATCCCTCATCGGGTTCTTCGCGGGATCGCGCTTAAT
CTTCTTGGTAACCGCCGCCATGTCGACTGATAACT

BS03845.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7726-PA 555 RpL11-RA 1..555 571..17 2775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
RpL11-RB 1017 CG7726-RB 78..633 571..16 2780 100 Minus
RpL11-RA 710 CG7726-RA 78..633 571..16 2780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19442799..19443099 444..144 1505 100 Minus
2R 25286936 2R 19443312..19443441 145..16 650 100 Minus
2R 25286936 2R 19442617..19442742 566..441 630 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:20:48 has no hits.

BS03845.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:12 Download gff for BS03845.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-PA 1..555 17..571 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:21 Download gff for BS03845.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7726-PA 1..555 17..571 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:17:09 Download gff for BS03845.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 69..642 7..579 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:48 Download gff for BS03845.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 69..642 7..579 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:48 Download gff for BS03845.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19442617..19442740 443..566 100 -> Minus
2R 19442801..19443098 145..442 100 -> Minus
2R 19443313..19443450 7..144 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:17:09 Download gff for BS03845.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15330122..15330245 443..566 100 -> Minus
arm_2R 15330306..15330603 145..442 100 -> Minus
arm_2R 15330818..15330955 7..144 97   Minus

BS03845.5prime Sequence

585 bp (584 high quality bases) assembled on 2005-11-29

> BS03845.5prime
GAAGTTATCAGTCGACATGGCGGCGGTTACCAAGAAGATTAAGCGCGATC
CCGCGAAGAACCCGATGAGGGATCTGCACATCCGCAAACTCTGCCTGAAC
ATCTGCGTGGGCGAGTCCGGTGACAGGCTGACCCGTGCCGCCAAGGTGCT
GGAGCAGCTGACTGGTCAGCAGCCAGTGTTCTCCAAGGCCCGCTACACGG
TCCGTTCGTTCGGTATTCGCCGTAACGAGAAGATCGCTGTCCACTGCACG
GTGCGCGGCGCCAAGGCTGAGGAGATTCTGGAGCGTGGCCTGAAGGTGCG
CGAGTACGAGCTGCGTCGGGAGAACTTCTCCTCCACCGGCAACTTCGGTT
TCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCCTCCATC
GGTATCTATGGTCTGGACTTCTACGTCGTCCTCGGCCGCCCTGGCTACAA
TGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGGCTTCCAGCACCGCC
TCACCAAGGAGGATGCCATGAAGTGGTTCCAGCAGAAATACGATGGTATC
ATCTTGAACACCAAGAAGTAGAAGCTTTCTAGACC

BS03845.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7726-PA 555 RpL11-RA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpL11-RB 1017 CG7726-RB 78..633 17..572 2780 100 Plus
RpL11-RA 710 CG7726-RA 78..633 17..572 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19442799..19443099 144..444 1505 100 Plus
2R 25286936 2R 19443312..19443441 443..572 650 100 Plus
2R 25286936 2R 19442617..19442742 22..147 630 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:48:38 has no hits.

BS03845.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:13 Download gff for BS03845.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-PA 1..555 17..571 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:22 Download gff for BS03845.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7726-PA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:37 Download gff for BS03845.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 69..642 9..581 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:17 Download gff for BS03845.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 69..642 9..581 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:17 Download gff for BS03845.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19442617..19442740 22..145 100 -> Plus
2R 19442801..19443098 146..443 100 -> Plus
2R 19443313..19443450 444..581 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:37 Download gff for BS03845.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15330122..15330245 22..145 100 -> Plus
arm_2R 15330306..15330603 146..443 100 -> Plus
arm_2R 15330818..15330955 444..581 97   Plus

BS03845.complete Sequence

587 bp (587 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634791

> BS03845.complete
GAAGTTATCAGTCGACATGGCGGCGGTTACCAAGAAGATTAAGCGCGATC
CCGCGAAGAACCCGATGAGGGATCTGCACATCCGCAAACTCTGCCTGAAC
ATCTGCGTGGGCGAGTCCGGTGACAGGCTGACCCGTGCCGCCAAGGTGCT
GGAGCAGCTGACTGGTCAGCAGCCAGTGTTCTCCAAGGCCCGCTACACGG
TCCGTTCGTTCGGTATTCGCCGTAACGAGAAGATCGCTGTCCACTGCACG
GTGCGCGGCGCCAAGGCTGAGGAGATTCTGGAGCGTGGCCTGAAGGTGCG
CGAGTACGAGCTGCGTCGGGAGAACTTCTCCTCCACCGGCAACTTCGGTT
TCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCCTCCATC
GGTATCTATGGTCTGGACTTCTACGTCGTCCTCGGCCGCCCTGGCTACAA
TGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGGCTTCCAGCACCGCC
TCACCAAGGAGGATGCCATGAAGTGGTTCCAGCAGAAATACGATGGTATC
ATCTTGAACACCAAGAAGTAGAAGCTTTCTAGACCAT

BS03845.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
RpL11-RB 555 CG7726-PB 1..555 17..571 2775 100 Plus
RpL11-RA 555 CG7726-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
RpL11-RB 1017 CG7726-RB 78..633 17..572 2780 100 Plus
RpL11-RA 710 CG7726-RA 78..633 17..572 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19442799..19443099 144..444 1505 100 Plus
2R 25286936 2R 19443312..19443441 443..572 650 100 Plus
2R 25286936 2R 19442617..19442742 22..147 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:16:12 has no hits.

BS03845.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:29 Download gff for BS03845.complete
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:35 Download gff for BS03845.complete
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 62..635 9..581 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:24 Download gff for BS03845.complete
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 78..632 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:29 Download gff for BS03845.complete
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 62..635 9..581 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:16 Download gff for BS03845.complete
Subject Subject Range Query Range Percent Splice Strand
RpL11-RA 78..632 17..571 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:16 Download gff for BS03845.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19442611..19442740 17..145 96 -> Plus
2R 19442801..19443098 146..443 100 -> Plus
2R 19443313..19443440 444..571 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:24 Download gff for BS03845.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15330116..15330245 17..145 96 -> Plus
arm_2R 15330306..15330603 146..443 100 -> Plus
arm_2R 15330818..15330945 444..571 100   Plus

BS03845.pep Sequence

Translation from 16 to 570

> BS03845.pep
MAAVTKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTG
QQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELR
RENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRK
RKSGTVGFQHRLTKEDAMKWFQQKYDGIILNTKK*

BS03845.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpL11-PB 184 CG7726-PB 1..184 1..184 962 100 Plus
RpL11-PA 184 CG7726-PA 1..184 1..184 962 100 Plus