Clone Sequence Records
BS03845.3prime Sequence
585 bp (584 high quality bases) assembled on 2005-12-01
> BS03845.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGGTGTTCAAGATGATACCATCGTAT
TTCTGCTGGAACCACTTCATGGCATCCTCCTTGGTGAGGCGGTGCTGGAA
GCCGACAGTGCCGGACTTGCGCTTCCTGTGGTTCACATTGTAGCCAGGGC
GGCCGAGGACGACGTAGAAGTCCAGACCATAGATACCGATGGAGGGATCG
TACTTGATGCCCAGATCGATGTGTTCCTGGATGCCGAAACCGAAGTTGCC
GGTGGAGGAGAAGTTCTCCCGACGCAGCTCGTACTCGCGCACCTTCAGGC
CACGCTCCAGAATCTCCTCAGCCTTGGCGCCGCGCACCGTGCAGTGGACA
GCGATCTTCTCGTTACGGCGAATACCGAACGAACGGACCGTGTAGCGGGC
CTTGGAGAACACTGGCTGCTGACCAGTCAGCTGCTCCAGCACCTTGGCGG
CACGGGTCAGCCTGTCACCGGACTCGCCCACGCAGATGTTCAGGCAGAGT
TTGCGGATGTGCAGATCCCTCATCGGGTTCTTCGCGGGATCGCGCTTAAT
CTTCTTGGTAACCGCCGCCATGTCGACTGATAACT
BS03845.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7726-PA | 555 | RpL11-RA | 1..555 | 571..17 | 2775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL11-RB | 1017 | CG7726-RB | 78..633 | 571..16 | 2780 | 100 | Minus |
RpL11-RA | 710 | CG7726-RA | 78..633 | 571..16 | 2780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19442799..19443099 | 444..144 | 1505 | 100 | Minus |
2R | 25286936 | 2R | 19443312..19443441 | 145..16 | 650 | 100 | Minus |
2R | 25286936 | 2R | 19442617..19442742 | 566..441 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:20:48 has no hits.
BS03845.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:12 Download gff for
BS03845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-PA | 1..555 | 17..571 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:21 Download gff for
BS03845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7726-PA | 1..555 | 17..571 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:17:09 Download gff for
BS03845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 69..642 | 7..579 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:48 Download gff for
BS03845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 69..642 | 7..579 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:48 Download gff for
BS03845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19442617..19442740 | 443..566 | 100 | -> | Minus |
2R | 19442801..19443098 | 145..442 | 100 | -> | Minus |
2R | 19443313..19443450 | 7..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:17:09 Download gff for
BS03845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15330122..15330245 | 443..566 | 100 | -> | Minus |
arm_2R | 15330306..15330603 | 145..442 | 100 | -> | Minus |
arm_2R | 15330818..15330955 | 7..144 | 97 | | Minus |
BS03845.5prime Sequence
585 bp (584 high quality bases) assembled on 2005-11-29
> BS03845.5prime
GAAGTTATCAGTCGACATGGCGGCGGTTACCAAGAAGATTAAGCGCGATC
CCGCGAAGAACCCGATGAGGGATCTGCACATCCGCAAACTCTGCCTGAAC
ATCTGCGTGGGCGAGTCCGGTGACAGGCTGACCCGTGCCGCCAAGGTGCT
GGAGCAGCTGACTGGTCAGCAGCCAGTGTTCTCCAAGGCCCGCTACACGG
TCCGTTCGTTCGGTATTCGCCGTAACGAGAAGATCGCTGTCCACTGCACG
GTGCGCGGCGCCAAGGCTGAGGAGATTCTGGAGCGTGGCCTGAAGGTGCG
CGAGTACGAGCTGCGTCGGGAGAACTTCTCCTCCACCGGCAACTTCGGTT
TCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCCTCCATC
GGTATCTATGGTCTGGACTTCTACGTCGTCCTCGGCCGCCCTGGCTACAA
TGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGGCTTCCAGCACCGCC
TCACCAAGGAGGATGCCATGAAGTGGTTCCAGCAGAAATACGATGGTATC
ATCTTGAACACCAAGAAGTAGAAGCTTTCTAGACC
BS03845.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7726-PA | 555 | RpL11-RA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL11-RB | 1017 | CG7726-RB | 78..633 | 17..572 | 2780 | 100 | Plus |
RpL11-RA | 710 | CG7726-RA | 78..633 | 17..572 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19442799..19443099 | 144..444 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 19443312..19443441 | 443..572 | 650 | 100 | Plus |
2R | 25286936 | 2R | 19442617..19442742 | 22..147 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:48:38 has no hits.
BS03845.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:13 Download gff for
BS03845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-PA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:22 Download gff for
BS03845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7726-PA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:37 Download gff for
BS03845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 69..642 | 9..581 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:17 Download gff for
BS03845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 69..642 | 9..581 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:17 Download gff for
BS03845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19442617..19442740 | 22..145 | 100 | -> | Plus |
2R | 19442801..19443098 | 146..443 | 100 | -> | Plus |
2R | 19443313..19443450 | 444..581 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:37 Download gff for
BS03845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15330122..15330245 | 22..145 | 100 | -> | Plus |
arm_2R | 15330306..15330603 | 146..443 | 100 | -> | Plus |
arm_2R | 15330818..15330955 | 444..581 | 97 | | Plus |
BS03845.complete Sequence
587 bp (587 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634791
> BS03845.complete
GAAGTTATCAGTCGACATGGCGGCGGTTACCAAGAAGATTAAGCGCGATC
CCGCGAAGAACCCGATGAGGGATCTGCACATCCGCAAACTCTGCCTGAAC
ATCTGCGTGGGCGAGTCCGGTGACAGGCTGACCCGTGCCGCCAAGGTGCT
GGAGCAGCTGACTGGTCAGCAGCCAGTGTTCTCCAAGGCCCGCTACACGG
TCCGTTCGTTCGGTATTCGCCGTAACGAGAAGATCGCTGTCCACTGCACG
GTGCGCGGCGCCAAGGCTGAGGAGATTCTGGAGCGTGGCCTGAAGGTGCG
CGAGTACGAGCTGCGTCGGGAGAACTTCTCCTCCACCGGCAACTTCGGTT
TCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCCTCCATC
GGTATCTATGGTCTGGACTTCTACGTCGTCCTCGGCCGCCCTGGCTACAA
TGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGGCTTCCAGCACCGCC
TCACCAAGGAGGATGCCATGAAGTGGTTCCAGCAGAAATACGATGGTATC
ATCTTGAACACCAAGAAGTAGAAGCTTTCTAGACCAT
BS03845.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL11-RB | 555 | CG7726-PB | 1..555 | 17..571 | 2775 | 100 | Plus |
RpL11-RA | 555 | CG7726-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL11-RB | 1017 | CG7726-RB | 78..633 | 17..572 | 2780 | 100 | Plus |
RpL11-RA | 710 | CG7726-RA | 78..633 | 17..572 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19442799..19443099 | 144..444 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 19443312..19443441 | 443..572 | 650 | 100 | Plus |
2R | 25286936 | 2R | 19442617..19442742 | 22..147 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:16:12 has no hits.
BS03845.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:29 Download gff for
BS03845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:35 Download gff for
BS03845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 62..635 | 9..581 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:24 Download gff for
BS03845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 78..632 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:29 Download gff for
BS03845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 62..635 | 9..581 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:16 Download gff for
BS03845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL11-RA | 78..632 | 17..571 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:16 Download gff for
BS03845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19442611..19442740 | 17..145 | 96 | -> | Plus |
2R | 19442801..19443098 | 146..443 | 100 | -> | Plus |
2R | 19443313..19443440 | 444..571 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:24 Download gff for
BS03845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15330116..15330245 | 17..145 | 96 | -> | Plus |
arm_2R | 15330306..15330603 | 146..443 | 100 | -> | Plus |
arm_2R | 15330818..15330945 | 444..571 | 100 | | Plus |
BS03845.pep Sequence
Translation from 16 to 570
> BS03845.pep
MAAVTKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTG
QQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELR
RENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRK
RKSGTVGFQHRLTKEDAMKWFQQKYDGIILNTKK*
BS03845.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL11-PB | 184 | CG7726-PB | 1..184 | 1..184 | 962 | 100 | Plus |
RpL11-PA | 184 | CG7726-PA | 1..184 | 1..184 | 962 | 100 | Plus |