Clone BS03846 Report

Search the DGRC for BS03846

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG42557-RA
Protein status:BS03846.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03846.3prime Sequence

492 bp (491 high quality bases) assembled on 2005-12-01

> BS03846.3prime
ATGGTCTAGAAAGCTTCTACTCCTCCTCCTGAGCTTCTTCTGCCGACTGC
TGCAGAGCGTCGTGCTCCACTATGTGGAAAGTTTCGCCCACGTTTACGGC
CTGAACGGGCAGCAGGTGCCGATGGAGGCGACCGCTTTCGATGGGCGCGT
CTAGCTCAAGGAACTGCTCGAAAATGGAAATGGGCACTCCCTCCGAAGAC
AGCAATCCCCGCATGCAATCCTGCCGCTTGTCTCGCAGGTTGTCCAACAA
CTTGTTGCCCTTCTGCACCCGGGCCAGCTTCCGCTCAAGTAGCTTTAAAT
AGTCGCTGGAATCCGGAAGGGGCTCGATTTTCCCGTCCTTTTGGACGTTG
CTCTCGTTTCCAGAGGGCAAGGGCGTGAAGTTGTCCTCAAAACTTTCGCT
ATTATTCGCGGACCCGGAGATTCCTTGCTTAACTATAGTATTTTTCAAGT
GCCAGGGATCGGCATTGCCAAGTGACATGTCGACTGATAACT

BS03846.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7866-PA 462 CG7866-RA 1..462 478..17 2310 100 Minus
CG7866-PB 771 CG7866-RB 1..458 478..21 2290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42558-RA 1095 CG42558-RA 99..562 480..17 2320 100 Minus
CG42557-RA 1095 CG42557-RA 99..562 480..17 2320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29933636..29933905 286..17 1350 100 Minus
3R 32079331 3R 29933385..29933579 480..286 975 100 Minus
Blast to na_te.dros performed on 2015-01-30 15:57:04 has no hits.

BS03846.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:14 Download gff for BS03846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7866-PA 1..462 17..478 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:23 Download gff for BS03846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7866-PA 1..462 17..478 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:18:58 Download gff for BS03846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42557-RA 99..565 14..480 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:36 Download gff for BS03846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42557-RA 99..565 14..480 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:36 Download gff for BS03846.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29933385..29933579 286..480 100 -> Minus
3R 29933637..29933908 14..285 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:18:58 Download gff for BS03846.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25759107..25759301 286..480 100 -> Minus
arm_3R 25759359..25759630 14..285 99   Minus

BS03846.5prime Sequence

492 bp (491 high quality bases) assembled on 2005-11-29

> BS03846.5prime
GAAGTTATCAGTCGACATGTCACTTGGCAATGCCGATCCCTGGCACTTGA
AAAATACTATAGTTAAGCAAGGAATCTCCGGGTCCGCGAATAATAGCGAA
AGTTTTGAGGACAACTTCACGCCCTTGCCCTCTGGAAACGAGAGCAACGT
CCAAAAGGACGGGAAAATCGAGCCCCTTCCGGATTCCAGCGACTATTTAA
AGCTACTTGAGCGGAAGCTGGCCCGGGTGCAGAAGGGCAACAAGTTGTTG
GACAACCTGCGAGACAAGCGGCAGGATTGCATGCGGGGATTGCTGTCTTC
GGAGGGAGTGCCCATTTCCATTTTCGAGCAGTTCCTTGAGCTAGACGCGC
CCATCGAAAGCGGTCGCCTCCATCGGCACCTGCTGCCCGTTCAGGCCGTA
AACGTGGGCGAAACTTTCCACATAGTGGAGCACGACGCTCTGCAGCAGTC
GGCAGAAGAAGCTCAGGAGGAGGAGTAGAAGCTTTCTAGACC

BS03846.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7866-PA 462 CG7866-RA 1..462 17..478 2310 100 Plus
CG7866-PB 771 CG7866-RB 1..458 17..474 2290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG42558-RA 1095 CG42558-RA 99..562 15..478 2320 100 Plus
CG42557-RA 1095 CG42557-RA 99..562 15..478 2320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29933636..29933905 209..478 1350 100 Plus
3R 32079331 3R 29933385..29933579 15..209 975 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:16:49 has no hits.

BS03846.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:15 Download gff for BS03846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7866-PA 1..462 17..478 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:24 Download gff for BS03846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7866-PA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:14 Download gff for BS03846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42557-RA 99..565 15..481 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:36 Download gff for BS03846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42557-RA 99..565 15..481 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:36 Download gff for BS03846.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29933385..29933579 15..209 100 -> Plus
3R 29933637..29933908 210..481 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:14 Download gff for BS03846.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25759107..25759301 15..209 100 -> Plus
arm_3R 25759359..25759630 210..481 99   Plus

BS03846.complete Sequence

494 bp (494 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634792

> BS03846.complete
GAAGTTATCAGTCGACATGTCACTTGGCAATGCCGATCCCTGGCACTTGA
AAAATACTATAGTTAAGCAAGGAATCTCCGGGTCCGCGAATAATAGCGAA
AGTTTTGAGGACAACTTCACGCCCTTGCCCTCTGGAAACGAGAGCAACGT
CCAAAAGGACGGGAAAATCGAGCCCCTTCCGGATTCCAGCGACTATTTAA
AGCTACTTGAGCGGAAGCTGGCCCGGGTGCAGAAGGGCAACAAGTTGTTG
GACAACCTGCGAGACAAGCGGCAGGATTGCATGCGGGGATTGCTGTCTTC
GGAGGGAGTGCCCATTTCCATTTTCGAGCAGTTCCTTGAGCTAGACGCGC
CCATCGAAAGCGGTCGCCTCCATCGGCACCTGCTGCCCGTTCAGGCCGTA
AACGTGGGCGAAACTTTCCACATAGTGGAGCACGACGCTCTGCAGCAGTC
GGCAGAAGAAGCTCAGGAGGAGGAGTAGAAGCTTTCTAGACCAT

BS03846.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG42557-RA 462 CG42557-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG42558-RA 1095 CG42558-RA 99..562 15..478 2320 100 Plus
CG42557-RA 1095 CG42557-RA 99..562 15..478 2320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29933636..29933905 209..478 1350 100 Plus
3R 32079331 3R 29933385..29933579 15..209 975 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:35:25 has no hits.

BS03846.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:22 Download gff for BS03846.complete
Subject Subject Range Query Range Percent Splice Strand
CG7866-RA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:37 Download gff for BS03846.complete
Subject Subject Range Query Range Percent Splice Strand
CG7866-RA 74..540 15..481 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:27 Download gff for BS03846.complete
Subject Subject Range Query Range Percent Splice Strand
CG42557-RA 101..562 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:22 Download gff for BS03846.complete
Subject Subject Range Query Range Percent Splice Strand
CG7866-RA 74..540 15..481 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:42 Download gff for BS03846.complete
Subject Subject Range Query Range Percent Splice Strand
CG42557-RA 101..562 17..478 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:42 Download gff for BS03846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29933637..29933905 210..478 100   Plus
3R 29933387..29933579 17..209 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:27 Download gff for BS03846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25759109..25759301 17..209 100 -> Plus
arm_3R 25759359..25759627 210..478 100   Plus

BS03846.pep Sequence

Translation from 16 to 477

> BS03846.pep
MSLGNADPWHLKNTIVKQGISGSANNSESFEDNFTPLPSGNESNVQKDGK
IEPLPDSSDYLKLLERKLARVQKGNKLLDNLRDKRQDCMRGLLSSEGVPI
SIFEQFLELDAPIESGRLHRHLLPVQAVNVGETFHIVEHDALQQSAEEAQ
EEE*

BS03846.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42557-PA 153 CG7866-PA 1..153 1..153 787 100 Plus