Clone Sequence Records
BS03846.3prime Sequence
492 bp (491 high quality bases) assembled on 2005-12-01
> BS03846.3prime
ATGGTCTAGAAAGCTTCTACTCCTCCTCCTGAGCTTCTTCTGCCGACTGC
TGCAGAGCGTCGTGCTCCACTATGTGGAAAGTTTCGCCCACGTTTACGGC
CTGAACGGGCAGCAGGTGCCGATGGAGGCGACCGCTTTCGATGGGCGCGT
CTAGCTCAAGGAACTGCTCGAAAATGGAAATGGGCACTCCCTCCGAAGAC
AGCAATCCCCGCATGCAATCCTGCCGCTTGTCTCGCAGGTTGTCCAACAA
CTTGTTGCCCTTCTGCACCCGGGCCAGCTTCCGCTCAAGTAGCTTTAAAT
AGTCGCTGGAATCCGGAAGGGGCTCGATTTTCCCGTCCTTTTGGACGTTG
CTCTCGTTTCCAGAGGGCAAGGGCGTGAAGTTGTCCTCAAAACTTTCGCT
ATTATTCGCGGACCCGGAGATTCCTTGCTTAACTATAGTATTTTTCAAGT
GCCAGGGATCGGCATTGCCAAGTGACATGTCGACTGATAACT
BS03846.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7866-PA | 462 | CG7866-RA | 1..462 | 478..17 | 2310 | 100 | Minus |
CG7866-PB | 771 | CG7866-RB | 1..458 | 478..21 | 2290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42558-RA | 1095 | CG42558-RA | 99..562 | 480..17 | 2320 | 100 | Minus |
CG42557-RA | 1095 | CG42557-RA | 99..562 | 480..17 | 2320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29933636..29933905 | 286..17 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 29933385..29933579 | 480..286 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 15:57:04 has no hits.
BS03846.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:14 Download gff for
BS03846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7866-PA | 1..462 | 17..478 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:23 Download gff for
BS03846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7866-PA | 1..462 | 17..478 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:18:58 Download gff for
BS03846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42557-RA | 99..565 | 14..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:36 Download gff for
BS03846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42557-RA | 99..565 | 14..480 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:36 Download gff for
BS03846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29933385..29933579 | 286..480 | 100 | -> | Minus |
3R | 29933637..29933908 | 14..285 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:18:58 Download gff for
BS03846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25759107..25759301 | 286..480 | 100 | -> | Minus |
arm_3R | 25759359..25759630 | 14..285 | 99 | | Minus |
BS03846.5prime Sequence
492 bp (491 high quality bases) assembled on 2005-11-29
> BS03846.5prime
GAAGTTATCAGTCGACATGTCACTTGGCAATGCCGATCCCTGGCACTTGA
AAAATACTATAGTTAAGCAAGGAATCTCCGGGTCCGCGAATAATAGCGAA
AGTTTTGAGGACAACTTCACGCCCTTGCCCTCTGGAAACGAGAGCAACGT
CCAAAAGGACGGGAAAATCGAGCCCCTTCCGGATTCCAGCGACTATTTAA
AGCTACTTGAGCGGAAGCTGGCCCGGGTGCAGAAGGGCAACAAGTTGTTG
GACAACCTGCGAGACAAGCGGCAGGATTGCATGCGGGGATTGCTGTCTTC
GGAGGGAGTGCCCATTTCCATTTTCGAGCAGTTCCTTGAGCTAGACGCGC
CCATCGAAAGCGGTCGCCTCCATCGGCACCTGCTGCCCGTTCAGGCCGTA
AACGTGGGCGAAACTTTCCACATAGTGGAGCACGACGCTCTGCAGCAGTC
GGCAGAAGAAGCTCAGGAGGAGGAGTAGAAGCTTTCTAGACC
BS03846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7866-PA | 462 | CG7866-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
CG7866-PB | 771 | CG7866-RB | 1..458 | 17..474 | 2290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42558-RA | 1095 | CG42558-RA | 99..562 | 15..478 | 2320 | 100 | Plus |
CG42557-RA | 1095 | CG42557-RA | 99..562 | 15..478 | 2320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29933636..29933905 | 209..478 | 1350 | 100 | Plus |
3R | 32079331 | 3R | 29933385..29933579 | 15..209 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:16:49 has no hits.
BS03846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:15 Download gff for
BS03846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7866-PA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:24 Download gff for
BS03846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7866-PA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:14 Download gff for
BS03846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42557-RA | 99..565 | 15..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:36 Download gff for
BS03846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42557-RA | 99..565 | 15..481 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:36 Download gff for
BS03846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29933385..29933579 | 15..209 | 100 | -> | Plus |
3R | 29933637..29933908 | 210..481 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:14 Download gff for
BS03846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25759107..25759301 | 15..209 | 100 | -> | Plus |
arm_3R | 25759359..25759630 | 210..481 | 99 | | Plus |
BS03846.complete Sequence
494 bp (494 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634792
> BS03846.complete
GAAGTTATCAGTCGACATGTCACTTGGCAATGCCGATCCCTGGCACTTGA
AAAATACTATAGTTAAGCAAGGAATCTCCGGGTCCGCGAATAATAGCGAA
AGTTTTGAGGACAACTTCACGCCCTTGCCCTCTGGAAACGAGAGCAACGT
CCAAAAGGACGGGAAAATCGAGCCCCTTCCGGATTCCAGCGACTATTTAA
AGCTACTTGAGCGGAAGCTGGCCCGGGTGCAGAAGGGCAACAAGTTGTTG
GACAACCTGCGAGACAAGCGGCAGGATTGCATGCGGGGATTGCTGTCTTC
GGAGGGAGTGCCCATTTCCATTTTCGAGCAGTTCCTTGAGCTAGACGCGC
CCATCGAAAGCGGTCGCCTCCATCGGCACCTGCTGCCCGTTCAGGCCGTA
AACGTGGGCGAAACTTTCCACATAGTGGAGCACGACGCTCTGCAGCAGTC
GGCAGAAGAAGCTCAGGAGGAGGAGTAGAAGCTTTCTAGACCAT
BS03846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42557-RA | 462 | CG42557-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42558-RA | 1095 | CG42558-RA | 99..562 | 15..478 | 2320 | 100 | Plus |
CG42557-RA | 1095 | CG42557-RA | 99..562 | 15..478 | 2320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29933636..29933905 | 209..478 | 1350 | 100 | Plus |
3R | 32079331 | 3R | 29933385..29933579 | 15..209 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:35:25 has no hits.
BS03846.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:22 Download gff for
BS03846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7866-RA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:37 Download gff for
BS03846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7866-RA | 74..540 | 15..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:27 Download gff for
BS03846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42557-RA | 101..562 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:22 Download gff for
BS03846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7866-RA | 74..540 | 15..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:42 Download gff for
BS03846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42557-RA | 101..562 | 17..478 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:42 Download gff for
BS03846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29933637..29933905 | 210..478 | 100 | | Plus |
3R | 29933387..29933579 | 17..209 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:27 Download gff for
BS03846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25759109..25759301 | 17..209 | 100 | -> | Plus |
arm_3R | 25759359..25759627 | 210..478 | 100 | | Plus |
BS03846.pep Sequence
Translation from 16 to 477
> BS03846.pep
MSLGNADPWHLKNTIVKQGISGSANNSESFEDNFTPLPSGNESNVQKDGK
IEPLPDSSDYLKLLERKLARVQKGNKLLDNLRDKRQDCMRGLLSSEGVPI
SIFEQFLELDAPIESGRLHRHLLPVQAVNVGETFHIVEHDALQQSAEEAQ
EEE*
BS03846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42557-PA | 153 | CG7866-PA | 1..153 | 1..153 | 787 | 100 | Plus |