Clone Sequence Records
BS03848.5prime Sequence
345 bp (344 high quality bases) assembled on 2005-11-29
> BS03848.5prime
GAAGTTATCAGTCGACATGTCGCACACCATCCTATTGGTACAGCCGGGTG
CTCGTCCGGAGACCCGCACTTACTGTGACTACGAGAGCGTCAACGAGTGC
ATGGAGGGCGTGTGCAAGATCTACGAGGAGCACCTGAAGCGCCGCAATCC
AAACACTCCGACCATTACGTATGACATTAGCCAGCTATTCGATTTCATCG
ACACAATGGTGGACATTAGCTGCATGGTTTACCAGAAGAGCACCAATACC
TATGCGCCCTACAATAAGGATTGGATCAAGGAGAAGATCTATGTGCTGCT
CCGTCAGGCGGCATTTAGTTCCAATACCTAAAAGCTTTCTAGACC
BS03848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1871-PA | 315 | e(r)-RA | 1..315 | 17..331 | 1575 | 100 | Plus |
CG1871-PB | 315 | e(r)-RB | 1..315 | 17..331 | 1575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(r)-RE | 1332 | CG1871-RE | 312..628 | 16..332 | 1585 | 100 | Plus |
e(r)-RD | 1191 | CG1871-RD | 171..487 | 16..332 | 1585 | 100 | Plus |
e(r)-RC | 1199 | CG1871-RC | 179..495 | 16..332 | 1585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8905063..8905379 | 332..16 | 1585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:44:13 has no hits.
BS03848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:18 Download gff for
BS03848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-PA | 1..315 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:29 Download gff for
BS03848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1871-PB | 1..315 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:52:02 Download gff for
BS03848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 173..495 | 6..332 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:08 Download gff for
BS03848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 173..495 | 6..332 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:08 Download gff for
BS03848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8905063..8905387 | 9..332 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:52:02 Download gff for
BS03848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8799096..8799420 | 9..332 | 99 | | Minus |
BS03848.3prime Sequence
345 bp (344 high quality bases) assembled on 2005-12-01
> BS03848.3prime
ATGGTCTAGAAAGCTTTTAGGTATTGGAACTAAATGCCGCCTGACGGAGC
AGCACATAGATCTTCTCCTTGATCCAATCCTTATTGTAGGGCGCATAGGT
ATTGGTGCTCTTCTGGTAAACCATGCAGCTAATGTCCACCATTGTGTCGA
TGAAATCGAATAGCTGGCTAATGTCATACGTAATGGTCGGAGTGTTTGGA
TTGCGGCGCTTCAGGTGCTCCTCGTAGATCTTGCACACGCCCTCCATGCA
CTCGTTGACGCTCTCGTAGTCACAGTAAGTGCGGGTCTCCGGACGAGCAC
CCGGCTGTACCAATAGGATGGTGTGCGACATGTCGACTGATAACT
BS03848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1871-PA | 315 | e(r)-RA | 1..315 | 331..17 | 1575 | 100 | Minus |
CG1871-PB | 315 | e(r)-RB | 1..315 | 331..17 | 1575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(r)-RE | 1332 | CG1871-RE | 312..628 | 332..16 | 1585 | 100 | Minus |
e(r)-RD | 1191 | CG1871-RD | 171..487 | 332..16 | 1585 | 100 | Minus |
e(r)-RC | 1199 | CG1871-RC | 179..495 | 332..16 | 1585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8905063..8905379 | 16..332 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:32:35 has no hits.
BS03848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:17 Download gff for
BS03848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-PA | 1..315 | 17..331 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:28 Download gff for
BS03848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1871-PB | 1..315 | 17..331 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:53:58 Download gff for
BS03848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 173..495 | 16..342 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:38 Download gff for
BS03848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 173..495 | 16..342 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:38 Download gff for
BS03848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8905063..8905387 | 16..339 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:53:58 Download gff for
BS03848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8799096..8799420 | 16..339 | 99 | | Plus |
BS03848.complete Sequence
347 bp (347 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634793
> BS03848.complete
GAAGTTATCAGTCGACATGTCGCACACCATCCTATTGGTACAGCCGGGTG
CTCGTCCGGAGACCCGCACTTACTGTGACTACGAGAGCGTCAACGAGTGC
ATGGAGGGCGTGTGCAAGATCTACGAGGAGCACCTGAAGCGCCGCAATCC
AAACACTCCGACCATTACGTATGACATTAGCCAGCTATTCGATTTCATCG
ACACAATGGTGGACATTAGCTGCATGGTTTACCAGAAGAGCACCAATACC
TATGCGCCCTACAATAAGGATTGGATCAAGGAGAAGATCTATGTGCTGCT
CCGTCAGGCGGCATTTAGTTCCAATACCTAAAAGCTTTCTAGACCAT
BS03848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(r)-RE | 315 | CG1871-PE | 1..315 | 17..331 | 1575 | 100 | Plus |
e(r)-RD | 315 | CG1871-PD | 1..315 | 17..331 | 1575 | 100 | Plus |
e(r)-RC | 315 | CG1871-PC | 1..315 | 17..331 | 1575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(r)-RE | 1332 | CG1871-RE | 312..628 | 16..332 | 1585 | 100 | Plus |
e(r)-RD | 1191 | CG1871-RD | 171..487 | 16..332 | 1585 | 100 | Plus |
e(r)-RC | 1199 | CG1871-RC | 179..495 | 16..332 | 1585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8905063..8905379 | 332..16 | 1585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:21 has no hits.
BS03848.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:24 Download gff for
BS03848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RB | 1..315 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:10 Download gff for
BS03848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RA | 220..542 | 6..332 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:18 Download gff for
BS03848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 180..492 | 17..329 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:24 Download gff for
BS03848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RA | 220..542 | 6..332 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:54 Download gff for
BS03848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(r)-RC | 180..492 | 17..329 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:54 Download gff for
BS03848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8905066..8905378 | 17..329 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:18 Download gff for
BS03848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8799099..8799411 | 17..329 | 100 | | Minus |
BS03848.pep Sequence
Translation from 16 to 330
> BS03848.pep
MSHTILLVQPGARPETRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTI
TYDISQLFDFIDTMVDISCMVYQKSTNTYAPYNKDWIKEKIYVLLRQAAF
SSNT*
BS03848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(r)-PE | 104 | CG1871-PE | 1..104 | 1..104 | 560 | 100 | Plus |
e(r)-PD | 104 | CG1871-PD | 1..104 | 1..104 | 560 | 100 | Plus |
e(r)-PC | 104 | CG1871-PC | 1..104 | 1..104 | 560 | 100 | Plus |
e(r)-PB | 104 | CG1871-PB | 1..104 | 1..104 | 560 | 100 | Plus |
e(r)-PA | 104 | CG1871-PA | 1..104 | 1..104 | 560 | 100 | Plus |