Clone BS03848 Report

Search the DGRC for BS03848

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:38
Well:48
Vector:pDNR-Dual
Associated Gene/Transcripte(r)-RA
Protein status:BS03848.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03848.5prime Sequence

345 bp (344 high quality bases) assembled on 2005-11-29

> BS03848.5prime
GAAGTTATCAGTCGACATGTCGCACACCATCCTATTGGTACAGCCGGGTG
CTCGTCCGGAGACCCGCACTTACTGTGACTACGAGAGCGTCAACGAGTGC
ATGGAGGGCGTGTGCAAGATCTACGAGGAGCACCTGAAGCGCCGCAATCC
AAACACTCCGACCATTACGTATGACATTAGCCAGCTATTCGATTTCATCG
ACACAATGGTGGACATTAGCTGCATGGTTTACCAGAAGAGCACCAATACC
TATGCGCCCTACAATAAGGATTGGATCAAGGAGAAGATCTATGTGCTGCT
CCGTCAGGCGGCATTTAGTTCCAATACCTAAAAGCTTTCTAGACC

BS03848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1871-PA 315 e(r)-RA 1..315 17..331 1575 100 Plus
CG1871-PB 315 e(r)-RB 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
e(r)-RE 1332 CG1871-RE 312..628 16..332 1585 100 Plus
e(r)-RD 1191 CG1871-RD 171..487 16..332 1585 100 Plus
e(r)-RC 1199 CG1871-RC 179..495 16..332 1585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8905063..8905379 332..16 1585 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:44:13 has no hits.

BS03848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:18 Download gff for BS03848.5prime
Subject Subject Range Query Range Percent Splice Strand
e(r)-PA 1..315 17..331 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:29 Download gff for BS03848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1871-PB 1..315 17..331 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:52:02 Download gff for BS03848.5prime
Subject Subject Range Query Range Percent Splice Strand
e(r)-RC 173..495 6..332 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:08 Download gff for BS03848.5prime
Subject Subject Range Query Range Percent Splice Strand
e(r)-RC 173..495 6..332 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:08 Download gff for BS03848.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8905063..8905387 9..332 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:52:02 Download gff for BS03848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8799096..8799420 9..332 99   Minus

BS03848.3prime Sequence

345 bp (344 high quality bases) assembled on 2005-12-01

> BS03848.3prime
ATGGTCTAGAAAGCTTTTAGGTATTGGAACTAAATGCCGCCTGACGGAGC
AGCACATAGATCTTCTCCTTGATCCAATCCTTATTGTAGGGCGCATAGGT
ATTGGTGCTCTTCTGGTAAACCATGCAGCTAATGTCCACCATTGTGTCGA
TGAAATCGAATAGCTGGCTAATGTCATACGTAATGGTCGGAGTGTTTGGA
TTGCGGCGCTTCAGGTGCTCCTCGTAGATCTTGCACACGCCCTCCATGCA
CTCGTTGACGCTCTCGTAGTCACAGTAAGTGCGGGTCTCCGGACGAGCAC
CCGGCTGTACCAATAGGATGGTGTGCGACATGTCGACTGATAACT

BS03848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1871-PA 315 e(r)-RA 1..315 331..17 1575 100 Minus
CG1871-PB 315 e(r)-RB 1..315 331..17 1575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
e(r)-RE 1332 CG1871-RE 312..628 332..16 1585 100 Minus
e(r)-RD 1191 CG1871-RD 171..487 332..16 1585 100 Minus
e(r)-RC 1199 CG1871-RC 179..495 332..16 1585 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8905063..8905379 16..332 1585 100 Plus
Blast to na_te.dros performed on 2015-02-06 13:32:35 has no hits.

BS03848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:34:17 Download gff for BS03848.3prime
Subject Subject Range Query Range Percent Splice Strand
e(r)-PA 1..315 17..331 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:51:28 Download gff for BS03848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1871-PB 1..315 17..331 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:53:58 Download gff for BS03848.3prime
Subject Subject Range Query Range Percent Splice Strand
e(r)-RC 173..495 16..342 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:38 Download gff for BS03848.3prime
Subject Subject Range Query Range Percent Splice Strand
e(r)-RC 173..495 16..342 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:38 Download gff for BS03848.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8905063..8905387 16..339 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:53:58 Download gff for BS03848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8799096..8799420 16..339 99   Plus

BS03848.complete Sequence

347 bp (347 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634793

> BS03848.complete
GAAGTTATCAGTCGACATGTCGCACACCATCCTATTGGTACAGCCGGGTG
CTCGTCCGGAGACCCGCACTTACTGTGACTACGAGAGCGTCAACGAGTGC
ATGGAGGGCGTGTGCAAGATCTACGAGGAGCACCTGAAGCGCCGCAATCC
AAACACTCCGACCATTACGTATGACATTAGCCAGCTATTCGATTTCATCG
ACACAATGGTGGACATTAGCTGCATGGTTTACCAGAAGAGCACCAATACC
TATGCGCCCTACAATAAGGATTGGATCAAGGAGAAGATCTATGTGCTGCT
CCGTCAGGCGGCATTTAGTTCCAATACCTAAAAGCTTTCTAGACCAT

BS03848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
e(r)-RE 315 CG1871-PE 1..315 17..331 1575 100 Plus
e(r)-RD 315 CG1871-PD 1..315 17..331 1575 100 Plus
e(r)-RC 315 CG1871-PC 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
e(r)-RE 1332 CG1871-RE 312..628 16..332 1585 100 Plus
e(r)-RD 1191 CG1871-RD 171..487 16..332 1585 100 Plus
e(r)-RC 1199 CG1871-RC 179..495 16..332 1585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8905063..8905379 332..16 1585 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:39:21 has no hits.

BS03848.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:59:24 Download gff for BS03848.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RB 1..315 17..331 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:36:10 Download gff for BS03848.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RA 220..542 6..332 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:18 Download gff for BS03848.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RC 180..492 17..329 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:59:24 Download gff for BS03848.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RA 220..542 6..332 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:54 Download gff for BS03848.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RC 180..492 17..329 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:54 Download gff for BS03848.complete
Subject Subject Range Query Range Percent Splice Strand
X 8905066..8905378 17..329 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:18 Download gff for BS03848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8799099..8799411 17..329 100   Minus

BS03848.pep Sequence

Translation from 16 to 330

> BS03848.pep
MSHTILLVQPGARPETRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTI
TYDISQLFDFIDTMVDISCMVYQKSTNTYAPYNKDWIKEKIYVLLRQAAF
SSNT*

BS03848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
e(r)-PE 104 CG1871-PE 1..104 1..104 560 100 Plus
e(r)-PD 104 CG1871-PD 1..104 1..104 560 100 Plus
e(r)-PC 104 CG1871-PC 1..104 1..104 560 100 Plus
e(r)-PB 104 CG1871-PB 1..104 1..104 560 100 Plus
e(r)-PA 104 CG1871-PA 1..104 1..104 560 100 Plus